mRNA_H-elongata_contig10888.719.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10888.719.1
Unique NamemRNA_H-elongata_contig10888.719.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig10888.719.1 vs. uniprot
Match: D7FLK1_ECTSI (Methyltransf_25 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK1_ECTSI)

HSP 1 Score: 572 bits (1475), Expect = 7.660e-197
Identity = 301/472 (63.77%), Postives = 360/472 (76.27%), Query Frame = 1 
Query:    1 GTNMPQVIVFNVGRHATVSQLEKILASNGIAYKKARKTPSISHGIISFETEEQRSSAMEKISKLKGPRGGEMMKPVL---QQNN------RKRGGSGXXXGLGNESKRQCKARGTEEDRKTAAQATASLYGVKTYVEQLAFKEKILRDDVFLSAAPPNPTRNQWEKRLSEWKKNLRNKKAEVEKHSRGDGGDSEGKLTYPSELRCPVWCRTFKRRDGIVPFDVSPMVPSPEKEASGRFGSRHLGYRNKCEFTLSLAKDGEPTAGFRASGFEEGVAITAESPNDCPQVHRNMKKLCTQMDAFMRSSAFPVYDDTTKMGVWRFLLARRSTAYDETMAKVVINPTGLEGSDEWQNEEKRLIKELSAGAQGKEGTKLVSLWIQEYAGVSAPDETSPLRLMWGKDRIEEELLGLRFTISPNSFFQVNTKGAEALYKVVIENLELGEDVMVMDVCCGAGTIGICAAATGGAKRVSDSD 1389
            G  + +V VFNVG+HAT++Q EKIL +N + YK+A+KTPSI+HG ++FET EQR+ AME++ K+ G RGGE+M  VL   +QNN      ++    G   G G ++ ++ +    E +RKT AQATASLYGVKTY EQLAFKEK L DD+FL    P   RN+W+KR  EWK+N   K+        G GG   G L  P+ELRCP WCR FKRRDG VPFDVSP+VP+PE E          GYRNKCEFTLSL++DG  TAGFRA  F+ GV IT ESP DCPQVH +MKKLC QMDAFMRSS FP+YDD TK GVWR L+ARRS A  E MA VVINPT ++ ++EW+ EE+RL+KELSAGAQG+EGTKLVSLW+QEYAG+S+PDETSP+RL+WGK+R+EEELLGLRFTISPNSFFQVNTKGAEALYKVVIENLELG+D +V+DVCCGAGTIGICAAA GGAK+V  SD
Sbjct:   70 GEELTKVTVFNVGKHATLAQFEKILKNNSVQYKRAKKTPSITHGTLTFETAEQRAVAMEQLRKIVGARGGELMFAVLARQKQNNDIGRGNKRSARDGDDDGRGGDASKRPRQ---EAERKTVAQATASLYGVKTYPEQLAFKEKTLMDDLFLKL--PIVIRNEWDKRFREWKRNQGMKQ--------GGGG---GTLNKPAELRCPAWCRMFKRRDGTVPFDVSPIVPAPEPE----------GYRNKCEFTLSLSEDGLATAGFRAGRFQAGVPITVESPKDCPQVHGDMKKLCVQMDAFMRSSPFPLYDDATKKGVWRLLVARRSAADKEGMAMVVINPTDVKDTEEWKKEEERLVKELSAGAQGEEGTKLVSLWVQEYAGLSSPDETSPMRLLWGKERLEEELLGLRFTISPNSFFQVNTKGAEALYKVVIENLELGDDAVVLDVCCGAGTIGICAAAAGGAKQVYGSD 515
[Close]
BLAST of mRNA_H-elongata_contig10888.719.1 vs. uniprot
Match: A0A6H5J9G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9G9_9PHAE)

HSP 1 Score: 274 bits (700), Expect = 2.650e-85
Identity = 158/291 (54.30%), Postives = 190/291 (65.29%), Query Frame = 1 
Query:    1 GTNMPQVIVFNVGRHATVSQLEKILASNGIAYKKARKTPSISHGIISFETEEQRSSAMEKISKLKGPRGGEMMKPVLQQNNRK-----------RGGSGXXXGLGNESKRQCKARGTEEDRKTAAQATASLYGVKTYVEQLAFKEKILRDDVFLSAAPPNPTRNQWEKRLSEWKKNLRNKKAEVEKHSRGDGGDSEGKLTYPSELRCPVWCRTFKRRDGIVPFDVSPMVPSPEKEASGRFGSRHLGYRNKCEFTLSLAKDGEPTAGFRASGFEEGVAITAESPNDCPQVHR 840
            G  + +V VFNVG+HAT++Q EKIL +NG+ YK+A+KTPSI+HG ++FET  QR+ AME++ K+ G RGGE+M  VL +  +            R G     G GN SKR  +    E +RKT AQATASLYGVKTY EQLAFKEK L DD+FL    P   RN+W+KR  EWK+N   K+         D G   G L  P+ELRCP WCR FKRRDG VPFDVSP+VP+PE E          GYRNKCEFTLSL++DG  TAGFRA  F+ GV IT ESP DCPQV R
Sbjct:   65 GEELTKVTVFNVGKHATLAQFEKILKNNGVEYKRAKKTPSITHGTLTFETAAQRAVAMEQLGKIVGARGGELMFAVLARQKQNXXXXXXXXRNAREGDDDGRG-GNASKRSRQ----EVERKTVAQATASLYGVKTYPEQLAFKEKTLMDDLFLKL--PLVIRNEWDKRFREWKRNQGVKQ---------DSGG--GALNKPAELRCPAWCRMFKRRDGTVPFDVSPIVPAPEPE----------GYRNKCEFTLSLSEDGLATAGFRAGRFQAGVPITVESPKDCPQVER 327
[Close]
BLAST of mRNA_H-elongata_contig10888.719.1 vs. uniprot
Match: A0A6A3TWB0_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TWB0_9STRA)

HSP 1 Score: 193 bits (491), Expect = 1.880e-50
Identity = 98/218 (44.95%), Postives = 135/218 (61.93%), Query Frame = 1 
Query:  703 GYRNKCEFTLSLAKDGEPTAGFRASGFEEGVAITAESPNDCPQVHRNMKKLCTQMDAFMRSSAFPVYDDTTKMGVWRFLLARRSTAYDETMAKVVINPTGLEGSDEWQNEEKRLIKELSAGAQGKEGT--KLVSLWIQEYAGVSAPDETSPLRLMWGKDRIEEELLGLRFTISPNSFFQVNTKGAEALYKVVIENLELGEDVMVMDVCCGAGTIGICA 1350
            GYRNKCEF+    K+ +P  GFR   F EG  + ++ PN+C  V   MK +C  M   + +S  PVY+ TTK GVWR L  R+S +  E MA V +NP G         EE+  +K+L       E    K+ S+++QEY G+SAP +  P+  ++GK +IEE LLG+RF +SPN+FFQVNT+GAE LY +V +++   E  ++ DVCCG GTIGICA
Sbjct:  477 GYRNKCEFSFGFDKEDKPCLGFRLGLFREGSVVVSK-PNECVNVSNEMKAVCAVMQNILETSDIPVYNVTTKSGVWRVLTVRQSVSTGELMAMVQVNPAGK------TTEERAAVKDLVVKRLTDESNPFKITSIFMQEYEGLSAPSDNDPVEHVFGKTKIEEHLLGMRFDVSPNAFFQVNTRGAEKLYSLVKQHVNADEHTLLYDVCCGTGTIGICA 687
[Close]
BLAST of mRNA_H-elongata_contig10888.719.1 vs. uniprot
Match: A0A397E4L7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E4L7_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.540e-49
Identity = 101/242 (41.74%), Postives = 137/242 (56.61%), Query Frame = 1 
Query:  640 VSPMVPSPEKEASGRFGSRHLGYRNKCEFTLSLAKDGEPTAGFRASGFEEGVAITAESPNDCPQVHRNMKKLCTQMDAFMRSSAFPVYDDTTKMGVWRFLLARRSTAYDETMAKVVINPTGLEGSDEWQNEEKRLIKELSAGAQGKEGTKLVSLWIQEYAGVSAPDETSPLRLMWGKDRIEEELLGLRFTISPNSFFQVNTKGAEALYKVVIENLELGEDVMVMDVCCGAGTIGICAAATGG 1365
            + P+ PSP  E          GYRNKCEF+     D  P  GFR   +++G+ ++  +P++C  V   MK +      F+  S+ PVYD  T  GVWR L  R S   +E M  V  NP+ L+ +D W   +  L++ L++         + S ++QEY+GVSAP+E  P+  ++GK  IEEELLGLRF IS N+FFQVNT GAEALY +V +         V DVCCG GTIG+C AA  G
Sbjct:    1 MQPIAPSPALE----------GYRNKCEFSCGYDADRNPVVGFRFGTYKDGL-VSVGAPDECINVPATMKAMVATFQTFLNQSSLPVYDVLTHQGVWRLLTIRASVHTNEVMVCVQANPSALD-ADVWTAAKAELVEALTSKHA------ITSFFVQEYSGVSAPEEDHPVVHVYGKSHIEEELLGLRFRISANAFFQVNTPGAEALYSLVRQFTAADAKTQVYDVCCGTGTIGLCLAADAG 224
[Close]
BLAST of mRNA_H-elongata_contig10888.719.1 vs. uniprot
Match: A0A3L6UXM0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6UXM0_9STRA)

HSP 1 Score: 185 bits (469), Expect = 1.630e-49
Identity = 103/248 (41.53%), Postives = 138/248 (55.65%), Query Frame = 1 
Query:  622 GIVPFDVSPMVPSPEKEASGRFGSRHLGYRNKCEFTLSLAKDGEPTAGFRASGFEEGVAITAESPNDCPQVHRNMKKLCTQMDAFMRSSAFPVYDDTTKMGVWRFLLARRSTAYDETMAKVVINPTGLEGSDEWQNEEKRLIKELSAGAQGKEGTKLVSLWIQEYAGVSAPDETSPLRLMWGKDRIEEELLGLRFTISPNSFFQVNTKGAEALYKVVIENLELGEDVMVMDVCCGAGTIGICAAATGG 1365
            G+    + P+ PSP  E          GYRNKCEF+     D  P  GFR   +++G+ ++  +P++C  V   MK +      F+  S+ PVYD  T  GVWR L  R S    E M  V  NP+ L+ +D W   +  L++ L++         + S ++QEY+GVSAP+E  P+  ++GK  IEEELLGLRF IS N+FFQVNT GAEALY +V E         V DVCCG GTIG+C AA  G
Sbjct:  199 GVDAAGMQPIAPSPALE----------GYRNKCEFSCGYDADRNPVVGFRFGTYKDGL-VSVGAPDECINVPATMKAMVATFQTFLNQSSLPVYDVLTHQGVWRLLTIRASVHTSEVMVCVQANPSALD-ADAWTAAKAELVEALTSKHA------ITSFFVQEYSGVSAPEEDHPVVHVYGKSHIEEELLGLRFRISANAFFQVNTPGAEALYSLVREFTAADAKTQVYDVCCGTGTIGLCLAADAG 428
[Close]
BLAST of mRNA_H-elongata_contig10888.719.1 vs. uniprot
Match: G4Z4X0_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z4X0_PHYSP)

HSP 1 Score: 187 bits (476), Expect = 1.770e-48
Identity = 97/218 (44.50%), Postives = 132/218 (60.55%), Query Frame = 1 
Query:  703 GYRNKCEFTLSLAKDGEPTAGFRASGFEEGVAITAESPNDCPQVHRNMKKLCTQMDAFMRSSAFPVYDDTTKMGVWRFLLARRSTAYDETMAKVVINPTGLEGSDEWQNEEKRLIKELSAGAQGKEGT--KLVSLWIQEYAGVSAPDETSPLRLMWGKDRIEEELLGLRFTISPNSFFQVNTKGAEALYKVVIENLELGEDVMVMDVCCGAGTIGICA 1350
            GYRNKCEF+    K+ +P  GFR   F EG  + ++ P++C  V   MK +C  M   + +S   VYD TTK GVWR L  R+S    E MA V +NP G         EE+  +K+L       E    K+ S +IQEY G+SAP +  P+  ++GK ++EE LLG+RF +SPN+FFQVNT+GAE LY +V ++ +  E  ++ DVCCG GTIGICA
Sbjct:  453 GYRNKCEFSFGFDKENKPCVGFRLGLFREGSVVVSK-PDECVNVSSEMKAVCAVMQNIVETSEILVYDVTTKSGVWRVLTVRQSVNTGELMAMVQVNPAGK------TPEERAALKDLLVERLTDENNSFKITSFYIQEYEGLSAPSDNDPVEHVFGKTKLEEHLLGMRFDVSPNAFFQVNTRGAEELYSLVKQHADADEHTLLYDVCCGTGTIGICA 663
[Close]
BLAST of mRNA_H-elongata_contig10888.719.1 vs. uniprot
Match: H3GEE9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GEE9_PHYRM)

HSP 1 Score: 186 bits (473), Expect = 4.920e-48
Identity = 95/218 (43.58%), Postives = 133/218 (61.01%), Query Frame = 1 
Query:  703 GYRNKCEFTLSLAKDGEPTAGFRASGFEEGVAITAESPNDCPQVHRNMKKLCTQMDAFMRSSAFPVYDDTTKMGVWRFLLARRSTAYDETMAKVVINPTGLEGSDEWQNEEKRLIKELSAGAQGKEGT--KLVSLWIQEYAGVSAPDETSPLRLMWGKDRIEEELLGLRFTISPNSFFQVNTKGAEALYKVVIENLELGEDVMVMDVCCGAGTIGICA 1350
            GYRNKCEF+    K+ +P  GFR   F EG  + ++ P++C  V   MK +CT M   + +S  PVY  TTK GVWR L  R+S   D+ M  + +NP G         EE+  IK+L       E    K+ S+++QEY G+SAP +  P+  ++GK +++E LLG+RF++SPN+FFQVNT+GAE LY +V +     E  ++ DVCCG GTIGICA
Sbjct:  463 GYRNKCEFSFGFDKEDKPCVGFRLGLFREGSVVVSK-PDECINVSTEMKAVCTVMQNILETSDVPVYSVTTKSGVWRVLTVRQSVNTDDLMVMMQVNPAGK------TPEERSAIKDLVVKRLTDESNSFKVTSIYMQEYEGLSAPSDNDPVEHVFGKTKLDEHLLGMRFSVSPNAFFQVNTRGAEKLYSLVKQYANADEHTLLYDVCCGTGTIGICA 673
[Close]
BLAST of mRNA_H-elongata_contig10888.719.1 vs. uniprot
Match: A0A2P4Y815_9STRA (23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y815_9STRA)

HSP 1 Score: 186 bits (472), Expect = 5.890e-48
Identity = 95/218 (43.58%), Postives = 131/218 (60.09%), Query Frame = 1 
Query:  703 GYRNKCEFTLSLAKDGEPTAGFRASGFEEGVAITAESPNDCPQVHRNMKKLCTQMDAFMRSSAFPVYDDTTKMGVWRFLLARRSTAYDETMAKVVINPTGLEGSDEWQNEEKRLIKELSAGAQGKEGT--KLVSLWIQEYAGVSAPDETSPLRLMWGKDRIEEELLGLRFTISPNSFFQVNTKGAEALYKVVIENLELGEDVMVMDVCCGAGTIGICA 1350
            GYRNKCEF+     + +P  GFR   F EG  + ++ P+DC  V   MK +C  M   + +S  PVY+  TK GVWR L  R+S   DE M  V +NP           EE+  +K+L       EG   K+ S+++QEY G+SAP +  P+  ++GK ++EE LLG+RF++SPN+FFQVNT+GAE LY +V +     E  ++ DVCCG GTIGICA
Sbjct:  445 GYRNKCEFSFGFDNEDKPCIGFRLGLFREGSVVVSK-PDDCINVSNEMKAVCAVMQNILETSDVPVYNVNTKTGVWRVLTVRQSVNTDELMVMVQVNPANK------TPEERAAVKDLVVKRLTDEGNSFKITSIYMQEYEGLSAPSDNDPVEHVFGKTKLEEHLLGMRFSVSPNAFFQVNTRGAEKLYSLVKQYANADEHTLLYDVCCGTGTIGICA 655
[Close]
BLAST of mRNA_H-elongata_contig10888.719.1 vs. uniprot
Match: W4GUV9_9STRA (23S rRNA (Uracil-5-)-methyltransferase RumA n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GUV9_9STRA)

HSP 1 Score: 185 bits (469), Expect = 1.440e-47
Identity = 103/242 (42.56%), Postives = 137/242 (56.61%), Query Frame = 1 
Query:  640 VSPMVPSPEKEASGRFGSRHLGYRNKCEFTLSLAKDGEPTAGFRASGFEEGVAITAESPNDCPQVHRNMKKLCTQMDAFMRSSAFPVYDDTTKMGVWRFLLARRSTAYDETMAKVVINPTGLEGSDEWQNEEKRLIKELSAGAQGKEGTKLVSLWIQEYAGVSAPDETSPLRLMWGKDRIEEELLGLRFTISPNSFFQVNTKGAEALYKVVIENLELGEDVMVMDVCCGAGTIGICAAATGG 1365
            + P+ PSP  E          GYRNKCEF+     D  P  GFR   +++G+ ++  +P++C  V   MK +     AF+  S+ PVYD  T  GVWR L  R S    E M  V  NP+ L+ +D W   +  L++ L++         + S ++QEY+GVSAP+E  P+  ++GK  IEEELLGLRF IS N+FFQVNT GAEALY +V E         V DVCCG GTIG+C AA  G
Sbjct:  430 MQPIAPSPALE----------GYRNKCEFSCGYDADRNPVVGFRFGTYKDGL-VSVGAPDECINVPATMKAMVATFQAFLNQSSMPVYDVLTHQGVWRLLTIRASVHTSEVMVCVQANPSALD-ADAWTAAKAELVEALTSKHA------ITSFFVQEYSGVSAPEEDHPVVHVYGKSHIEEELLGLRFRISANAFFQVNTPGAEALYSLVREFTAADAKTQVYDVCCGTGTIGLCLAADAG 653
[Close]
BLAST of mRNA_H-elongata_contig10888.719.1 vs. uniprot
Match: A0A662XY21_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XY21_9STRA)

HSP 1 Score: 184 bits (466), Expect = 5.000e-47
Identity = 96/217 (44.24%), Postives = 134/217 (61.75%), Query Frame = 1 
Query:  703 GYRNKCEFTLSLAKDGEPTAGFRASGFEEGVAITAESPNDCPQVHRNMKKLCTQMDAFMRSSAFPVYDDTTKMGVWRFLLARRSTAYDETMAKVVINPTGLEGSDEWQNEEKRLIKELSAGAQGKEGT-KLVSLWIQEYAGVSAPDETSPLRLMWGKDRIEEELLGLRFTISPNSFFQVNTKGAEALYKVVIENLELGEDVMVMDVCCGAGTIGICA 1350
            GYRNKCEF+  L  + +P  GFR   F EG  + ++ P++C  V   MK +C  M   + +S  PVYD  TK+GVWR L  R+S A ++ M  V +NP     +D+ Q E   L   + A    K+ + K+ S+++QEY G+S P E  P+  ++G   IEE LLG+RF++SPN+FFQVNT+GAE LY +V  + +  E  M+ DVCCG GTIGICA
Sbjct:  485 GYRNKCEFSFGLDAEDKPCLGFRLGLFREGSVVVSK-PDECVNVSSTMKAVCAVMQELVETSGIPVYDVKTKLGVWRVLTVRQSVATNDLMVMVQVNP-----ADKTQAERDTLKDLVVARLTNKKNSFKVTSIFLQEYDGLSTPSENDPVINVFGSATIEEHLLGMRFSVSPNAFFQVNTRGAEKLYSLVKHHAKADEHTMLYDVCCGTGTIGICA 695
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10888.719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLK1_ECTSI7.660e-19763.77Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A6H5J9G9_9PHAE2.650e-8554.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A3TWB0_9STRA1.880e-5044.95Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A397E4L7_9STRA1.540e-4941.74Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A3L6UXM0_9STRA1.630e-4941.53Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
G4Z4X0_PHYSP1.770e-4844.50Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
H3GEE9_PHYRM4.920e-4843.58Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A2P4Y815_9STRA5.890e-4843.5823S rRNA (Uracil-5-)-methyltransferase RumA n=1 Ta... [more]
W4GUV9_9STRA1.440e-4742.5623S rRNA (Uracil-5-)-methyltransferase RumA n=10 T... [more]
A0A662XY21_9STRA5.000e-4744.24Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10888contigH-elongata_contig10888:4280..8412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score571.6
Seed ortholog evalue3.3e-160
Seed eggNOG ortholog2880.D7FLK1
Preferred nameTRMT2A
KEGG koko:K15331,ko:K15332
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0097159,GO:1901363
EggNOG free text desc.S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity
EggNOG OGsCOG2265@1,KOG2187@2759
EC2.1.1.35
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMethyltransferase domain
Ec32 orthologEc-17_000890.1
Exons11
Model size1389
Cds size1380
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10888.719.1prot_H-elongata_contig10888.719.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10888 4289..8412 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929615.769572-UTR-H-elongata_contig10888:4279..42881622929615.769572-UTR-H-elongata_contig10888:4279..4288Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10888 4280..4288 +
1691679092.3572876-UTR-H-elongata_contig10888:4279..42881691679092.3572876-UTR-H-elongata_contig10888:4279..4288Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10888 4280..4288 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929615.7920144-CDS-H-elongata_contig10888:4288..44261622929615.7920144-CDS-H-elongata_contig10888:4288..4426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 4289..4426 +
1691679092.3755305-CDS-H-elongata_contig10888:4288..44261691679092.3755305-CDS-H-elongata_contig10888:4288..4426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 4289..4426 +
1622929615.8122196-CDS-H-elongata_contig10888:4583..47541622929615.8122196-CDS-H-elongata_contig10888:4583..4754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 4584..4754 +
1691679092.38888-CDS-H-elongata_contig10888:4583..47541691679092.38888-CDS-H-elongata_contig10888:4583..4754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 4584..4754 +
1622929615.8263924-CDS-H-elongata_contig10888:5091..52041622929615.8263924-CDS-H-elongata_contig10888:5091..5204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 5092..5204 +
1691679092.4113128-CDS-H-elongata_contig10888:5091..52041691679092.4113128-CDS-H-elongata_contig10888:5091..5204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 5092..5204 +
1622929615.8429866-CDS-H-elongata_contig10888:5443..57141622929615.8429866-CDS-H-elongata_contig10888:5443..5714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 5444..5714 +
1691679092.4235954-CDS-H-elongata_contig10888:5443..57141691679092.4235954-CDS-H-elongata_contig10888:5443..5714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 5444..5714 +
1622929615.8601596-CDS-H-elongata_contig10888:5852..59811622929615.8601596-CDS-H-elongata_contig10888:5852..5981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 5853..5981 +
1691679092.4350395-CDS-H-elongata_contig10888:5852..59811691679092.4350395-CDS-H-elongata_contig10888:5852..5981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 5853..5981 +
1622929615.8762455-CDS-H-elongata_contig10888:6203..62811622929615.8762455-CDS-H-elongata_contig10888:6203..6281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 6204..6281 +
1691679092.4477227-CDS-H-elongata_contig10888:6203..62811691679092.4477227-CDS-H-elongata_contig10888:6203..6281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 6204..6281 +
1622929615.8903544-CDS-H-elongata_contig10888:6659..67481622929615.8903544-CDS-H-elongata_contig10888:6659..6748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 6660..6748 +
1691679092.4583542-CDS-H-elongata_contig10888:6659..67481691679092.4583542-CDS-H-elongata_contig10888:6659..6748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 6660..6748 +
1622929615.9047604-CDS-H-elongata_contig10888:7203..72971622929615.9047604-CDS-H-elongata_contig10888:7203..7297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 7204..7297 +
1691679092.4673212-CDS-H-elongata_contig10888:7203..72971691679092.4673212-CDS-H-elongata_contig10888:7203..7297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 7204..7297 +
1622929615.9193094-CDS-H-elongata_contig10888:7534..76751622929615.9193094-CDS-H-elongata_contig10888:7534..7675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 7535..7675 +
1691679092.474758-CDS-H-elongata_contig10888:7534..76751691679092.474758-CDS-H-elongata_contig10888:7534..7675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 7535..7675 +
1622929615.9342957-CDS-H-elongata_contig10888:7967..80121622929615.9342957-CDS-H-elongata_contig10888:7967..8012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 7968..8012 +
1691679092.4840686-CDS-H-elongata_contig10888:7967..80121691679092.4840686-CDS-H-elongata_contig10888:7967..8012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 7968..8012 +
1622929615.9490643-CDS-H-elongata_contig10888:8301..84121622929615.9490643-CDS-H-elongata_contig10888:8301..8412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 8302..8412 +
1691679092.4938645-CDS-H-elongata_contig10888:8301..84121691679092.4938645-CDS-H-elongata_contig10888:8301..8412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10888 8302..8412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10888.719.1

>prot_H-elongata_contig10888.719.1 ID=prot_H-elongata_contig10888.719.1|Name=mRNA_H-elongata_contig10888.719.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=460bp
MPQVIVFNVGRHATVSQLEKILASNGIAYKKARKTPSISHGIISFETEEQ
RSSAMEKISKLKGPRGGEMMKPVLQQNNRKRGGSGSGSGLGNESKRQCKA
RGTEEDRKTAAQATASLYGVKTYVEQLAFKEKILRDDVFLSAAPPNPTRN
QWEKRLSEWKKNLRNKKAEVEKHSRGDGGDSEGKLTYPSELRCPVWCRTF
KRRDGIVPFDVSPMVPSPEKEASGRFGSRHLGYRNKCEFTLSLAKDGEPT
AGFRASGFEEGVAITAESPNDCPQVHRNMKKLCTQMDAFMRSSAFPVYDD
TTKMGVWRFLLARRSTAYDETMAKVVINPTGLEGSDEWQNEEKRLIKELS
AGAQGKEGTKLVSLWIQEYAGVSAPDETSPLRLMWGKDRIEEELLGLRFT
ISPNSFFQVNTKGAEALYKVVIENLELGEDVMVMDVCCGAGTIGICAAAT
GGAKRVSDSD
back to top

mRNA from alignment at H-elongata_contig10888:4280..8412+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10888.719.1 ID=mRNA_H-elongata_contig10888.719.1|Name=mRNA_H-elongata_contig10888.719.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4133bp|location=Sequence derived from alignment at H-elongata_contig10888:4280..8412+ (Himanthalia elongata Himel1 dioecious)
GGGACCAACATGCCGCAGGTGATCGTTTTCAACGTCGGCCGGCACGCCAC
TGTCAGCCAGCTGGAGAAGATCCTTGCGTCTAATGGAATCGCTTACAAAA
AAGCGCGCAAGACGCCGTCAATTTCTCACGGAATTATCTCTTTCGAGGTT
CGTAAAACCCCCCGCTTTCCTATGGCCTAAACGCTGGGGTCATCCACGGG
CACGCTTAGCCGAGCAGCCGTACTATTTCCCGCGTAGCAAGCGCAACATA
CTGTACAGATACGACGTCTTTAATAGCTTCATGCACCTGTCTGTCCCGCG
GAAGACCGAGGAGCAGCGCTCGTCAGCCATGGAAAAAATATCGAAGCTCA
AGGGCCCCCGTGGGGGAGAGATGATGAAGCCGGTGCTCCAGCAAAACAAC
CGCAAGCGAGGTGGAAGCGGAAGCGGAAGCGGTCTAGGAAATGAATCCAA
ACGCCAGTGCAAGGCAAGAGGCACTGTCGTCGTCGTAATGTCCATCCTCT
GACGTATTCGACCGAGTGGTGGAGCGGGCGGTTGGGCAGTGACAGCGATA
CACGTTGCTAGTATCTGTGGTAAACGCTCCGATCTACTCCAGGAGATCGG
CCGAGCTCGCAAATTGATGGACAAACGCGTCGGGCGTAGTGAAGCCCAGT
GTAGCCGTGGGGGCTGTCGCGAACCACAACACCTATGTCTACCGATTTCA
GACAATCTTGCCTTCCGACGGAACGAAGCCATTATGGGATCAACACTGTG
GTGGCGGTCTTTTTCAACTTCATTATATATCAGCGCCTTTTTTGGTTCAT
TGTTCAAAACAGGAAGAAGACCGAAAGACAGCTGCCCAGGCGACGGCATC
CCTGTACGGAGTTAAGACCTACGTGGAGCAGCTGGCCTTCAAGGAGAAGA
TCCTCAGGGACGACGTCTTCTTGAGGTTGCCAGGCCTTGTAAGGCAAGCA
TTCTCGAGATTTCGATCAAAAGGTCCTTCATCGTGTGAAACCGACAAATG
CAGCGCGCGCGCAGAAGAGGTGCCTCGTAACAATAAATATCGCCGCCTTA
CGTTGCGAGAAAATGTACCCCCCTGCCAACACTAAATCGTCGTGTGTTGG
GACGGTTTCCAAAGAGTAAAAATAAAAACACCCTTCGTCCTCCATAGTAT
GCCTCACAATCAAGCGCTGCCCCCCCAAACCCTACCAGAAATCAATGGGA
AAAGCGCCTAAGCGAGTGGAAGAAGAACCTGCGGAACAAGAAGGCCGAGG
TCGAGAAGCATTCCAGGGGAGATGGTGGTGACTCCGAGGGAAAGCTTACT
TACCCGTCCGAGCTCCGTTGCCCTGTCTGGTGCCGGACCTTCAAGAGGCG
CGACGGGATCGTACCTTTCGACGTTTCCCCCATGGTGCCCTCTCCCGAGA
AGGAGGCGAGTGGTAGGTTTGGGAGCAGGCATCTGGTCGAACCGTATGCT
CACGGGTACTTCGCGTTTGCCCGCTCATTCAAGCGGTTCTCGCTGTCAAA
TCAGCAAAAGGTCGTTACCCCGGACGTTGCGGGTCATAGTTACACGAATG
CTTTCGCGTGGTTTCCGTCACAGGGCTACCGAAACAAATGCGAATTCACG
TTGAGCCTGGCTAAGGATGGCGAACCGACCGCGGGGTTCCGGGCATCGGG
CTTCGAGGAGGGCGTAGCCATCACGGCGGAGTCGCCCAACGACTGCCCAC
AGGTGGCCGGGAGATTCATTTTTCTATTTTTCCGACCCTTTGATTCACAT
GCACTGCGTTTGAGCACGGAGATACGTATCCCGTTTATTACAGACCCCCG
GAGCGACTACCCTCAGTTACTTGATCCTCACACCAGAGGCAAAATTATCC
ACTATCATCCATTCAATACTCAATACAGCCTCAATGAGTGAAATGACCAG
TCAGCCACACGCTTTAATCCTCAGGTGCACCGAAACATGAAGAAACTTTG
CACGCAAATGGACGCCTTTATGCGCAGCTCTGCCTTTCCTGTTTACGATG
ATGTAAGCAAGGCTTGGAGTCGTCGGAACTGAAAAGGGAGCGCTGATATT
GGGTAGCAAGGGACTGGTTCGGGGGACGAACTGTTTCGTTTACTCTATTT
TGCTATAAGTGTAGTTTGACAAAAGGGTCTCATCTGACGCTTCCGAATTT
ATGTTCTCCCCCATTTGTTGATTCTTCTGCTGTCTTGTAGGTATACACCG
ATCGTCCGCAACACACGATAAAGTACGCTTGCGGATATTTGTTTTGCAGT
ACCTTGGCAGCATCCTTTGATAGGGCTGTTCATAGCTTACTCCGAAGCGT
AGTAGTGCCTCAAGGAGATATCGCGGCAGTGCGATTGTGCAACATGCATG
CGCGCTCGCCTCTTACCATACTATCGCCAGACGACCAAGATGGGCGTGTG
GAGGTTCTTGCTGGCCCGGCGTTCTACGGCGTACGACGAGACCATGGCCA
AGGTCGTTATTAACCCAACGTGGGTTATGTACAGACAGTACAATGGAGTG
GGGCTGCCCCCCCTCCCCCCTCCCCCGAAGGATGCAATATCTGTACATCC
GTAAAACCTTTCGTCGGAGGTCGTATTAGTCAATGGGAGCGGTGAGGTCC
TGGAAGTTGATACGACCTCCTCGTTGAGTTTGAAATCGCCGGCACGATCG
GTTAGAATTCCGGAATGAGGATCACCGGAACTCTTCTTTGTCATGTTACG
TGCTAGCCATTCCAAGTAAGTTTTCGGTTTGATGGCGTGCCCCCCATCCC
CGCCGGAGGCGTTTGCGTACTCTTGGTGAAAGCGTGTTTTTATCTAGCAA
CGAAAGAAACTGCTACGCACCAAGAATCACCCACGGATGGCGACAATTTT
ACTCGCCCTTCTAGTTCGCCGGGTGTTGAAATTGTGCGCCACTTCTTTCT
TCGCCGATGGCGTGATCCTCACAGGGGACTGGAAGGTTCCGACGAGTGGC
AAAACGAGGAGAAACGCCTCATCAAGGAGCTGTCAGCAGGGGCCCAAGGA
AAGGAGGGAACGAAGCTCGTAAGCCTTGTGATTCTCCGCTACTTTAGTCC
ATGACTGGCGGGCTAGCGAAACCGGACAAAAGGGAGGGGATCACGGGCAG
CGTTTACGATATGAATAGGTGGCAAGAGCAAGTCGATCCAATTCTCGGGT
GCCAGGAATTCAGGCTCAACAGCCAACTTGACGGCTCTACTAGGCTCGAT
ACCGGCCAGTTGTCGCCAAACTTAATATTTACACCTCTACGCGATTCCGC
GCCAGGTTTCCTTGTGGATTCAAGAATACGCGGGAGTTTCTGCGCCGGAT
GAAACGTCGCCGCTGCGGCTGATGTGGGGCAAAGATCGAATCGAGGAAGA
GTTGCTCGGGCTGCGCTTCACGATTTCCCCCAACTCTTTTTTCCAGGTCC
TTATTCGTGCGTGAGCGCGCTCTTTTGATACGGAAAGTGGGGGGAAGGTT
TGCAGAACTCCAACCGCTACAGCAATACATTTGAGCATCGCAGATGTCGG
GCGTAAAGCCGCACGTATTTTGCGACGTGGGACAAAAAAAATGCCGGCGG
CTTAAGGGCCATCATTTCGGATATATTTTTGTTGTTATTCAGTCAATACA
TGTCTCGCGTTTGTGATGAGAGCAAGCTAGACCTGTAACCGACGCCCCCT
CCCCCACCCCCCGCGCGGTCGTGATACGAAACCTGCAGGTTAACACCAAG
GGAGCCGAGGCGCTGTACAAGGTGGTGATTGAGGTATGGCGTTCGCTTTT
GTTTTTTGTTCGCCCTGTCACAATGTAGCGATGATGGGGTGTCCGCATAT
CTTACGGATATAAACGTCGATACGTAGTGTGTGTGTGTACCCTAGACCAT
CTTGCGGTGGCGATTCCCTCGCAGCAGCACATTTGTCCCGAAACGCCTAG
AAGTGCGGACTCGATCGAAAGCAGAACACAATATTTTCCTTTTTCTCCAT
TCGCTTGCATCAATATTCTGCTGGAGCATCGTGCATAATTTTTGTGTTCC
GAATATTTCTGGTCCTCGGCAGAACCTGGAGCTCGGCGAAGACGTGATGG
TTATGGACGTGTGCTGCGGGGCGGGGACGATCGGCATTTGCGCGGCCGCG
ACAGGAGGGGCAAAACGTGTGAGCGATAGCGAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig10888:4280..8412+

>mRNA_H-elongata_contig10888.719.1 ID=mRNA_H-elongata_contig10888.719.1|Name=mRNA_H-elongata_contig10888.719.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2760bp|location=Sequence derived from alignment at H-elongata_contig10888:4280..8412+ (Himanthalia elongata Himel1 dioecious)
ATGCCGCAGGTGATCGTTTTCAACGTCGGCCGGCACGCCACTGTCAGCCA
GCTGGAGAAGATCCTTGCGTCTAATGGAATCGCTTACAAAAAAGCGCGCA
AGACGCCGTCAATTTCTCACGGAATTATCTCTTTCGAGATGCCGCAGGTG
ATCGTTTTCAACGTCGGCCGGCACGCCACTGTCAGCCAGCTGGAGAAGAT
CCTTGCGTCTAATGGAATCGCTTACAAAAAAGCGCGCAAGACGCCGTCAA
TTTCTCACGGAATTATCTCTTTCGAGACCGAGGAGCAGCGCTCGTCAGCC
ATGGAAAAAATATCGAAGCTCAAGGGCCCCCGTGGGGGAGAGATGATGAA
GCCGGTGCTCCAGCAAAACAACCGCAAGCGAGGTGGAAGCGGAAGCGGAA
GCGGTCTAGGAAATGAATCCAAACGCCAGTGCAAGGCAAGAGGCACTACC
GAGGAGCAGCGCTCGTCAGCCATGGAAAAAATATCGAAGCTCAAGGGCCC
CCGTGGGGGAGAGATGATGAAGCCGGTGCTCCAGCAAAACAACCGCAAGC
GAGGTGGAAGCGGAAGCGGAAGCGGTCTAGGAAATGAATCCAAACGCCAG
TGCAAGGCAAGAGGCACTGAAGAAGACCGAAAGACAGCTGCCCAGGCGAC
GGCATCCCTGTACGGAGTTAAGACCTACGTGGAGCAGCTGGCCTTCAAGG
AGAAGATCCTCAGGGACGACGTCTTCTTGAGGAAGAAGACCGAAAGACAG
CTGCCCAGGCGACGGCATCCCTGTACGGAGTTAAGACCTACGTGGAGCAG
CTGGCCTTCAAGGAGAAGATCCTCAGGGACGACGTCTTCTTGAGCGCTGC
CCCCCCAAACCCTACCAGAAATCAATGGGAAAAGCGCCTAAGCGAGTGGA
AGAAGAACCTGCGGAACAAGAAGGCCGAGGTCGAGAAGCATTCCAGGGGA
GATGGTGGTGACTCCGAGGGAAAGCTTACTTACCCGTCCGAGCTCCGTTG
CCCTGTCTGGTGCCGGACCTTCAAGAGGCGCGACGGGATCGTACCTTTCG
ACGTTTCCCCCATGGTGCCCTCTCCCGAGAAGGAGGCGAGTGGTAGGTTT
GGGAGCAGGCATCTGCGCTGCCCCCCCAAACCCTACCAGAAATCAATGGG
AAAAGCGCCTAAGCGAGTGGAAGAAGAACCTGCGGAACAAGAAGGCCGAG
GTCGAGAAGCATTCCAGGGGAGATGGTGGTGACTCCGAGGGAAAGCTTAC
TTACCCGTCCGAGCTCCGTTGCCCTGTCTGGTGCCGGACCTTCAAGAGGC
GCGACGGGATCGTACCTTTCGACGTTTCCCCCATGGTGCCCTCTCCCGAG
AAGGAGGCGAGTGGTAGGTTTGGGAGCAGGCATCTGGGCTACCGAAACAA
ATGCGAATTCACGTTGAGCCTGGCTAAGGATGGCGAACCGACCGCGGGGT
TCCGGGCATCGGGCTTCGAGGAGGGCGTAGCCATCACGGCGGAGTCGCCC
AACGACTGCCCACAGGGCTACCGAAACAAATGCGAATTCACGTTGAGCCT
GGCTAAGGATGGCGAACCGACCGCGGGGTTCCGGGCATCGGGCTTCGAGG
AGGGCGTAGCCATCACGGCGGAGTCGCCCAACGACTGCCCACAGGTGCAC
CGAAACATGAAGAAACTTTGCACGCAAATGGACGCCTTTATGCGCAGCTC
TGCCTTTCCTGTTTACGATGATGTGCACCGAAACATGAAGAAACTTTGCA
CGCAAATGGACGCCTTTATGCGCAGCTCTGCCTTTCCTGTTTACGATGAT
ACGACCAAGATGGGCGTGTGGAGGTTCTTGCTGGCCCGGCGTTCTACGGC
GTACGACGAGACCATGGCCAAGGTCGTTATTAACCCAACACGACCAAGAT
GGGCGTGTGGAGGTTCTTGCTGGCCCGGCGTTCTACGGCGTACGACGAGA
CCATGGCCAAGGTCGTTATTAACCCAACGGGACTGGAAGGTTCCGACGAG
TGGCAAAACGAGGAGAAACGCCTCATCAAGGAGCTGTCAGCAGGGGCCCA
AGGAAAGGAGGGAACGAAGCTCGGGACTGGAAGGTTCCGACGAGTGGCAA
AACGAGGAGAAACGCCTCATCAAGGAGCTGTCAGCAGGGGCCCAAGGAAA
GGAGGGAACGAAGCTCGTTTCCTTGTGGATTCAAGAATACGCGGGAGTTT
CTGCGCCGGATGAAACGTCGCCGCTGCGGCTGATGTGGGGCAAAGATCGA
ATCGAGGAAGAGTTGCTCGGGCTGCGCTTCACGATTTCCCCCAACTCTTT
TTTCCAGGTTTCCTTGTGGATTCAAGAATACGCGGGAGTTTCTGCGCCGG
ATGAAACGTCGCCGCTGCGGCTGATGTGGGGCAAAGATCGAATCGAGGAA
GAGTTGCTCGGGCTGCGCTTCACGATTTCCCCCAACTCTTTTTTCCAGGT
TAACACCAAGGGAGCCGAGGCGCTGTACAAGGTGGTGATTGAGGTTAACA
CCAAGGGAGCCGAGGCGCTGTACAAGGTGGTGATTGAGAACCTGGAGCTC
GGCGAAGACGTGATGGTTATGGACGTGTGCTGCGGGGCGGGGACGATCGG
CATTTGCGCGGCCGCGACAGGAGGGGCAAAACGTGTGAGCGATAGCGATA
ACCTGGAGCTCGGCGAAGACGTGATGGTTATGGACGTGTGCTGCGGGGCG
GGGACGATCGGCATTTGCGCGGCCGCGACAGGAGGGGCAAAACGTGTGAG
CGATAGCGAT
back to top