mRNA_H-elongata_contig108877.718.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108877.718.1
Unique NamemRNA_H-elongata_contig108877.718.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig108877.718.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 6.020e-44
Identity = 84/139 (60.43%), Postives = 100/139 (71.94%), Query Frame = 1 
Query:  115 VSTVCGFCGDVGCHTTIKGPSRKVAPVMHSSCPYAPRKDARDAAVQLSLKSARSGSDTSPCTNIVVKCIFCSQETYIWKYGMADHVTRCHNEDPLVAADTDGAKTFKHNYTVSESEKSKVLKRFKSGKLRPRRDTNALP 531
            VSTVCGFCG VGC +TI  P  +  P++HS+CP APR DAR  AV L+L SAR+ SDTSPCTN+V+KC  CSQ+ YIW YGM DHVTRCH  + LVA  T GA  FK   T+SESEK+KVL + K+G+ R R   N LP
Sbjct: 1088 VSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHVTRCHQANVLVAVGT-GADKFKEACTISESEKAKVLHKVKAGRPRRRDQGNTLP 1225
[Close]
BLAST of mRNA_H-elongata_contig108877.718.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.020e-41
Identity = 82/130 (63.08%), Postives = 93/130 (71.54%), Query Frame = 1 
Query:   82 GRHILKDEAIQVSTVCGFCGDVGCHTTIKGPSRKVAPVMHSSCPYAPRKDARDAAVQLSLKSARSGSDTSPCTNIVVKCIFCSQETYIWKYGMADHVTRCHNEDPLVAADTDGAKTFKHNYTVSESEKSK 471
            G HILKD+   VST CGFCG VG  TTI  P  K  P++HS+CP APR DAR  AV L+L SAR+GSDTS CTN+V KC FCSQ  YIWKY M+DH+TRCH  D LVA  T GA  FK   T+SESEK+K
Sbjct:  403 GGHILKDK---VSTACGFCGGVGRPTTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLSSARAGSDTSLCTNMVFKCFFCSQYNYIWKYSMSDHITRCHQADVLVAEGT-GADNFKETCTISESEKAK 528
[Close]
BLAST of mRNA_H-elongata_contig108877.718.1 vs. uniprot
Match: D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 8.260e-29
Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 1 
Query:  304 IVVKCIFCSQETYIWKYGMADHVTRCHNEDPLVAADTDGAKTFKHNYTVSESEKSKVLKRFKSGKLRPRRDTN-ALPTGARKSVSGNGALGNGVPGTRPQEE 606
            +V+KC+FCSQ+TYIWKYGM++HVTRCH ED LVAA T     FK  YT+SESEK+KVL++FK+G+ R R   N ALPTGA  S  GNG  G  + GTR  E+
Sbjct:    1 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTT-VDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNMSGTRSLED 101
[Close]
BLAST of mRNA_H-elongata_contig108877.718.1 vs. uniprot
Match: A0A6H5K5R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R3_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.590e-22
Identity = 55/102 (53.92%), Postives = 66/102 (64.71%), Query Frame = 1 
Query:  304 IVVKCIFCSQETYIWKYGMADHVTRCHNEDPLVAADTDGAKTFKHNYTVSESEKSKVLKRFKSGKLRPRRDTN-ALPTGARKSVSGNGALGNGVPGTRPQEE 606
            +V+KC  CSQ  YIWKYGM++HVTR H ED  VAA T G   FK  Y++SESEK+K L +FK+GK R R   N  LP GA     GNGA G  + GTR  E+
Sbjct:    1 MVLKCFVCSQNNYIWKYGMSEHVTRRHQEDMRVAAGT-GVDKFKEAYSISESEKAKALHKFKAGKPRQRGQGNEVLPPGALGRTEGNGASGRNMAGTRSLED 101
[Close]
BLAST of mRNA_H-elongata_contig108877.718.1 vs. uniprot
Match: A0A8H8JBI3_9AGAM (C2H2-type domain-containing protein n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JBI3_9AGAM)

HSP 1 Score: 70.1 bits (170), Expect = 1.210e-9
Identity = 46/124 (37.10%), Postives = 61/124 (49.19%), Query Frame = 1 
Query:   58 RSKMRMHVGRHILKDEAIQVST-------VCGFCGDVGCHTTIKGPSR--KVAPVMHSSCPYAPRKDARDAAVQLSLKSARSGSDTSPCTNIVVKCIFCSQETYIWKYGMADHVTRCHNEDPLV 402
            +SKMRMH+G+H+L   +   +T       +CGFCG  G  T    P R  K   V+ S C Y      RD   + S  +A   S TSPCTN  V C  CS +  +W YG+ DH+   H    L+
Sbjct: 1185 KSKMRMHIGQHLLVLRSSLDATRTGVMADMCGFCGRAGTCTVRVEPQRTGKGLEVV-SDCSY------RD---KFSYAAAAQSSKTSPCTNRPVACPLCSGDRCVWSYGLKDHILAVHPAHQLL 1298
[Close]
BLAST of mRNA_H-elongata_contig108877.718.1 vs. uniprot
Match: B0DV83_LACBS (Predicted protein n=1 Tax=Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) TaxID=486041 RepID=B0DV83_LACBS)

HSP 1 Score: 62.8 bits (151), Expect = 1.420e-8
Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = 1 
Query:   10 AGADKILCRLWDQRLPRSKMRMHVGRHIL----KDEAIQVSTV----CGFCG-DVGCHTTIKGPSRKVAPVMHSSCPYAPRKDARDAAVQLSLKSARSGSDTSPCTNIVVKCIFCS 330
            +GA  + C L  ++   SKMR+HVG+HIL    +   +++ ++    CGFCG D GC T +      VA V+ S+CP+   K        +  K+A   +  SPCTNI + C  C+
Sbjct:   28 SGATDVNCELCGEKTTISKMRVHVGKHILYSMRRRPDVELKSMGASPCGFCGLDSGCQTQLTFKKNGVA-VIKSTCPFHYEK--------MQYKAALEPTKASPCTNIPIHCRLCA 134
[Close]
BLAST of mRNA_H-elongata_contig108877.718.1 vs. uniprot
Match: A0A4S4MVC7_9APHY (Uncharacterized protein n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4MVC7_9APHY)

HSP 1 Score: 62.8 bits (151), Expect = 2.900e-7
Identity = 42/135 (31.11%), Postives = 61/135 (45.19%), Query Frame = 1 
Query:   19 DKILCRLWDQRLPRSKMRMHVGRHIL------KDEAIQVST-VCGFCGDVGCHTTIKGPSRKVAPVMHSSCPYAPRKDARDAAVQLSLKSARSGSDTSPCTNIVVKCIFCSQETY-----IWKYGMADHVTRCHN 387
            D+I C+L +   P S+MR HVG HIL      +D+ I +    CGFCG  GC   +          + S+C Y           Q+    A   S+ +PCTN+ + C+ C +        IWKY    H+T  H+
Sbjct:  770 DEIQCQLCEVNTPLSRMRNHVGIHILHALRGIEDDGIVIGVDPCGFCGLEGCVVQMIDSDDGNTHRILSNCEYH--------YTQMKYGPASRFSNATPCTNVPIHCLSCERTASGLPRTIWKYNALYHITLDHS 896
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108877.718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K6M3_9PHAE6.020e-4460.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L2E6_9PHAE1.020e-4163.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNW9_ECTSI8.260e-2959.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5R3_9PHAE1.590e-2253.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8H8JBI3_9AGAM1.210e-937.10C2H2-type domain-containing protein n=1 Tax=Cerato... [more]
B0DV83_LACBS1.420e-834.48Predicted protein n=1 Tax=Laccaria bicolor (strain... [more]
A0A4S4MVC7_9APHY2.900e-731.11Uncharacterized protein n=1 Tax=Antrodiella citrin... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108877contigH-elongata_contig108877:321..1490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size906
Cds size906
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929615.6918128-CDS-H-elongata_contig108877:320..4251622929615.6918128-CDS-H-elongata_contig108877:320..425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108877 321..425 +
1691679092.3391764-CDS-H-elongata_contig108877:320..4251691679092.3391764-CDS-H-elongata_contig108877:320..425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108877 321..425 +
1622929615.7182775-CDS-H-elongata_contig108877:689..14901622929615.7182775-CDS-H-elongata_contig108877:689..1490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108877 690..1490 +
1691679092.3483305-CDS-H-elongata_contig108877:689..14901691679092.3483305-CDS-H-elongata_contig108877:689..1490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108877 690..1490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108877.718.1prot_H-elongata_contig108877.718.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108877 321..1490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108877.718.1

>prot_H-elongata_contig108877.718.1 ID=prot_H-elongata_contig108877.718.1|Name=mRNA_H-elongata_contig108877.718.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=302bp
AGGAGADKILCRLWDQRLPRSKMRMHVGRHILKDEAIQVSTVCGFCGDVG
CHTTIKGPSRKVAPVMHSSCPYAPRKDARDAAVQLSLKSARSGSDTSPCT
NIVVKCIFCSQETYIWKYGMADHVTRCHNEDPLVAADTDGAKTFKHNYTV
SESEKSKVLKRFKSGKLRPRRDTNALPTGARKSVSGNGALGNGVPGTRPQ
EEEEEGEGEGEEAGEEEEDEDDDEEEDEDKDEDENEEDEDEDEDEDQDGG
NKDEEADGREEGVVEGRRGRKSQRAGSISSSSEAPHEHVQEPVRTSTRGR
PL
back to top

mRNA from alignment at H-elongata_contig108877:321..1490+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108877.718.1 ID=mRNA_H-elongata_contig108877.718.1|Name=mRNA_H-elongata_contig108877.718.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1170bp|location=Sequence derived from alignment at H-elongata_contig108877:321..1490+ (Himanthalia elongata Himel1 dioecious)
GCTGGGGGTGCGGGTGCGGATAAAATCTTGTGCAGGCTCTGGGATCAACG
ACTTCCGCGATCGAAAATGAGGATGCACGTCGGCAGGCACATACTGAAGG
ACGAGGTGCGTATCGCTTTTATAGTTTTGGCCAGGAGATATCTTGATAAT
TTTTGTACCATTGAACGACAGAGAGCGAAATCGTTAACGTTGATTGTCAC
TTCGTATTTGCAACCAAATGGCGCGCGTTGTAATTGAGGTAGGCCAGAAG
TTGGGCGATAGTTTTTGCTGAATACGAGTGCCCACATGTTGCATGCATTT
ATCAATCTGGCAGAACAACGTGAATCGTAACCTCACCGGGCTTGCATCCT
CTCTCTTCTCCCATCGCAGGCTATACAGGTGAGCACTGTATGCGGCTTCT
GCGGGGATGTCGGATGTCATACCACAATCAAGGGTCCATCCCGCAAGGTT
GCGCCCGTCATGCACTCCAGCTGTCCATACGCTCCTCGGAAGGACGCGCG
TGATGCGGCTGTCCAACTTAGCCTGAAAAGTGCGAGATCAGGCTCGGACA
CCTCACCGTGTACCAACATCGTCGTGAAGTGCATCTTCTGCTCTCAGGAG
ACATACATATGGAAGTATGGTATGGCCGACCACGTCACTAGATGCCACAA
CGAGGACCCACTAGTTGCCGCCGACACAGATGGAGCAAAAACGTTCAAGC
ATAACTATACTGTGTCGGAGAGCGAGAAGAGCAAGGTGCTGAAAAGGTTC
AAATCCGGGAAGCTTCGCCCTCGTCGCGACACCAACGCTCTCCCCACTGG
TGCACGTAAGAGCGTGTCGGGGAATGGCGCTCTGGGCAATGGTGTGCCAG
GCACCCGGCCCCAAGAAGAGGAGGAGGAGGGCGAGGGGGAAGGGGAGGAA
GCGGGGGAAGAGGAAGAGGACGAAGACGACGACGAAGAAGAAGATGAAGA
CAAAGATGAAGATGAAAACGAAGAAGATGAAGACGAAGATGAAGACGAGG
ACCAGGACGGGGGGAACAAAGACGAGGAGGCCGACGGACGAGAGGAAGGG
GTGGTAGAAGGGCGGCGGGGGAGAAAAAGTCAACGGGCGGGGAGTATCAG
CAGTAGTAGCGAGGCACCGCACGAACACGTGCAAGAACCCGTGCGTACGA
GTACGCGAGGCAGACCACTT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig108877:321..1490+

>mRNA_H-elongata_contig108877.718.1 ID=mRNA_H-elongata_contig108877.718.1|Name=mRNA_H-elongata_contig108877.718.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1812bp|location=Sequence derived from alignment at H-elongata_contig108877:321..1490+ (Himanthalia elongata Himel1 dioecious)
GCTGGGGGTGCGGGTGCGGATAAAATCTTGTGCAGGCTCTGGGATCAACG
ACTTCCGCGATCGAAAATGAGGATGCACGTCGGCAGGCACATACTGAAGG
ACGAGGCTGGGGGTGCGGGTGCGGATAAAATCTTGTGCAGGCTCTGGGAT
CAACGACTTCCGCGATCGAAAATGAGGATGCACGTCGGCAGGCACATACT
GAAGGACGAGGCTATACAGGTGAGCACTGTATGCGGCTTCTGCGGGGATG
TCGGATGTCATACCACAATCAAGGGTCCATCCCGCAAGGTTGCGCCCGTC
ATGCACTCCAGCTGTCCATACGCTCCTCGGAAGGACGCGCGTGATGCGGC
TGTCCAACTTAGCCTGAAAAGTGCGAGATCAGGCTCGGACACCTCACCGT
GTACCAACATCGTCGTGAAGTGCATCTTCTGCTCTCAGGAGACATACATA
TGGAAGTATGGTATGGCCGACCACGTCACTAGATGCCACAACGAGGACCC
ACTAGTTGCCGCCGACACAGATGGAGCAAAAACGTTCAAGCATAACTATA
CTGTGTCGGAGAGCGAGAAGAGCAAGGTGCTGAAAAGGTTCAAATCCGGG
AAGCTTCGCCCTCGTCGCGACACCAACGCTCTCCCCACTGGTGCACGTAA
GAGCGTGTCGGGGAATGGCGCTCTGGGCAATGGTGTGCCAGGCACCCGGC
CCCAAGAAGAGGAGGAGGAGGGCGAGGGGGAAGGGGAGGAAGCGGGGGAA
GAGGAAGAGGACGAAGACGACGACGAAGAAGAAGATGAAGACAAAGATGA
AGATGAAAACGAAGAAGATGAAGACGAAGATGAAGACGAGGACCAGGACG
GGGGGAACAAAGACGAGGAGGCCGACGGACGAGAGGAAGGGGTGGTAGAA
GGGCGGCGGGGGAGAAAAAGTCAACGGGCGGGGAGTATCAGCAGTAGTAG
CGAGGCACCGCACGAACACGTGCAAGAACCCGTGCGTACGAGTACGCGAG
GCAGACCACTTGCTATACAGGTGAGCACTGTATGCGGCTTCTGCGGGGAT
GTCGGATGTCATACCACAATCAAGGGTCCATCCCGCAAGGTTGCGCCCGT
CATGCACTCCAGCTGTCCATACGCTCCTCGGAAGGACGCGCGTGATGCGG
CTGTCCAACTTAGCCTGAAAAGTGCGAGATCAGGCTCGGACACCTCACCG
TGTACCAACATCGTCGTGAAGTGCATCTTCTGCTCTCAGGAGACATACAT
ATGGAAGTATGGTATGGCCGACCACGTCACTAGATGCCACAACGAGGACC
CACTAGTTGCCGCCGACACAGATGGAGCAAAAACGTTCAAGCATAACTAT
ACTGTGTCGGAGAGCGAGAAGAGCAAGGTGCTGAAAAGGTTCAAATCCGG
GAAGCTTCGCCCTCGTCGCGACACCAACGCTCTCCCCACTGGTGCACGTA
AGAGCGTGTCGGGGAATGGCGCTCTGGGCAATGGTGTGCCAGGCACCCGG
CCCCAAGAAGAGGAGGAGGAGGGCGAGGGGGAAGGGGAGGAAGCGGGGGA
AGAGGAAGAGGACGAAGACGACGACGAAGAAGAAGATGAAGACAAAGATG
AAGATGAAAACGAAGAAGATGAAGACGAAGATGAAGACGAGGACCAGGAC
GGGGGGAACAAAGACGAGGAGGCCGACGGACGAGAGGAAGGGGTGGTAGA
AGGGCGGCGGGGGAGAAAAAGTCAACGGGCGGGGAGTATCAGCAGTAGTA
GCGAGGCACCGCACGAACACGTGCAAGAACCCGTGCGTACGAGTACGCGA
GGCAGACCACTT
back to top