mRNA_H-elongata_contig108858.717.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108858.717.1
Unique NamemRNA_H-elongata_contig108858.717.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig108858.717.1 vs. uniprot
Match: D7FK88_ECTSI (SANT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK88_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.220e-14
Identity = 34/46 (73.91%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 LSLH-QVFDKVAQEVEGKTVGEVVEFYYMWKKTHHYKLWKSMWRAE 135
            +S+H +VF KVA+E+EGKTV +VVEFYYMWKKT+HYK WKSM+RAE
Sbjct:  468 ISVHGKVFHKVAEEIEGKTVADVVEFYYMWKKTNHYKQWKSMFRAE 513
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BLAST of mRNA_H-elongata_contig108858.717.1 vs. uniprot
Match: A0A6H5KPS5_9PHAE (SANT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPS5_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 7.940e-14
Identity = 32/46 (69.57%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 LSLH-QVFDKVAQEVEGKTVGEVVEFYYMWKKTHHYKLWKSMWRAE 135
            +S+H +VF KVA+E++GKTV +VVEFYYMWKKT+HYK WK+M+RAE
Sbjct:  667 ISVHGKVFHKVAEEIDGKTVADVVEFYYMWKKTNHYKQWKAMFRAE 712
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BLAST of mRNA_H-elongata_contig108858.717.1 vs. uniprot
Match: B8CAX2_THAPS (MYB DNA binding protein/ transcription factor-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAX2_THAPS)

HSP 1 Score: 53.5 bits (127), Expect = 2.000e-8
Identity = 23/46 (50.00%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 LSLH-QVFDKVAQEVEGKTVGEVVEFYYMWKKTHHYKLWKSMWRAE 135
            ++LH ++F +V + V+ K+  E+VEFYY+WKKT HY+ WKS + AE
Sbjct:   13 MALHGKIFHQVQKWVKTKSTKEIVEFYYIWKKTSHYRRWKSQYEAE 58
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BLAST of mRNA_H-elongata_contig108858.717.1 vs. uniprot
Match: A0A7S2R001_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R001_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 5.750e-7
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    7 LHQVFDKVAQEVEGKTVGEVVEFYYMWKKTHHYKLWKS 120
            L + F +V + +  K+  E+VEFYY+WKKTHHYK+WK 
Sbjct:   83 LGKQFHRVQKLIRTKSTKEIVEFYYIWKKTHHYKMWKK 120
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BLAST of mRNA_H-elongata_contig108858.717.1 vs. uniprot
Match: A0A1Z5JP76_FISSO (SANT domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JP76_FISSO)

HSP 1 Score: 52.4 bits (124), Expect = 6.060e-7
Identity = 21/34 (61.76%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:   19 FDKVAQEVEGKTVGEVVEFYYMWKKTHHYKLWKS 120
            F+KV  E+  KT  EV+EFYYMWKKT HY  WK 
Sbjct:  133 FEKVQSEIGSKTTKEVIEFYYMWKKTSHYSSWKK 166
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BLAST of mRNA_H-elongata_contig108858.717.1 vs. uniprot
Match: A0A6U0ZH30_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0ZH30_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.590e-6
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:   19 FDKVAQEVEGKTVGEVVEFYYMWKKTHHYKLWKSMWRAE 135
            F KV + VE KT  EVVEFYY+WKKT HY  WK ++  E
Sbjct:  145 FHKVQRAVESKTTKEVVEFYYVWKKTAHYDHWKRIYEPE 183
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BLAST of mRNA_H-elongata_contig108858.717.1 vs. uniprot
Match: A0A7S4RT22_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RT22_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.060e-6
Identity = 22/46 (47.83%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 LSLH-QVFDKVAQEVEGKTVGEVVEFYYMWKKTHHYKLWKSMWRAE 135
            LSL+ +VF KV + V  KT  E++EFYY+WKK+ HY+ WK  +  +
Sbjct:  189 LSLYGKVFHKVQKIVRSKTTKEIIEFYYIWKKSSHYRRWKGQYEVD 234
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BLAST of mRNA_H-elongata_contig108858.717.1 vs. uniprot
Match: A0A7S1UJW4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJW4_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 5.640e-6
Identity = 19/39 (48.72%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:   19 FDKVAQEVEGKTVGEVVEFYYMWKKTHHYKLWKSMWRAE 135
            F  V ++V+ K+  +++EFYY+WKKT HYKLWK  +  E
Sbjct:  155 FHAVQKDVQTKSTKDIIEFYYLWKKTSHYKLWKRSYENE 193
[Close]
BLAST of mRNA_H-elongata_contig108858.717.1 vs. uniprot
Match: A0A7S0KBC3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KBC3_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 2.090e-5
Identity = 21/41 (51.22%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:   13 QVFDKVAQEVEGKTVGEVVEFYYMWKKTHHYKLWKSMWRAE 135
            +VF  V + V+ K+  E+VEFYY+WKKT HYK WK     E
Sbjct:  320 KVFHSVQKVVKTKSTKEIVEFYYVWKKTSHYKRWKQQHEPE 360
[Close]
BLAST of mRNA_H-elongata_contig108858.717.1 vs. uniprot
Match: A0A0K3APW2_BABMR (SANT domain-containing protein n=1 Tax=Babesia microti (strain RI) TaxID=1133968 RepID=A0A0K3APW2_BABMR)

HSP 1 Score: 47.8 bits (112), Expect = 5.370e-5
Identity = 20/39 (51.28%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    7 LHQVFDKVAQEVEGKTVGEVVEFYYMWKKTHHYKLWKSM 123
            L + F K+ Q +  K+VGE+V+FYY+WKKT  Y LWK +
Sbjct:  325 LGKEFYKLHQLIPTKSVGEIVDFYYIWKKTRRYHLWKQV 363
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108858.717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FK88_ECTSI1.220e-1473.91SANT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KPS5_9PHAE7.940e-1469.57SANT domain-containing protein n=1 Tax=Ectocarpus ... [more]
B8CAX2_THAPS2.000e-850.00MYB DNA binding protein/ transcription factor-like... [more]
A0A7S2R001_9STRA5.750e-752.63Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A1Z5JP76_FISSO6.060e-761.76SANT domain-containing protein n=2 Tax=Fistulifera... [more]
A0A6U0ZH30_9STRA1.590e-658.97Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4RT22_9STRA4.060e-647.83Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S1UJW4_9STRA5.640e-648.72Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0KBC3_9STRA2.090e-551.22Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A0K3APW2_BABMR5.370e-551.28SANT domain-containing protein n=1 Tax=Babesia mic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108858contigH-elongata_contig108858:1080..1214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue9.4e-12
Seed eggNOG ortholog2880.D7FK88
Preferred nameRCOR3
KEGG koko:K11829
KEGG Pathwayko05016,map05016
GOsGO:0000122,GO:0000785,GO:0000981,GO:0000982,GO:0001067,GO:0001078,GO:0001227,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003700,GO:0003712,GO:0003714,GO:0003824,GO:0004407,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006476,GO:0006807,GO:0006950,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007221,GO:0007275,GO:0007596,GO:0007599,GO:0008134,GO:0008150,GO:0008152,GO:0008593,GO:0009611,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0016043,GO:0016569,GO:0016570,GO:0016575,GO:0016787,GO:0016810,GO:0016811,GO:0017053,GO:0019213,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023051,GO:0023052,GO:0023056,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0031056,GO:0031057,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031935,GO:0031937,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033558,GO:0034101,GO:0035065,GO:0035067,GO:0035601,GO:0036211,GO:0042060,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045595,GO:0045597,GO:0045637,GO:0045639,GO:0045652,GO:0045654,GO:0045747,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050793,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0051052,GO:0051054,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0060255,GO:0060968,GO:0061085,GO:0061086,GO:0065007,GO:0065008,GO:0070013,GO:0070933,GO:0071704,GO:0071840,GO:0080090,GO:0090239,GO:0090241,GO:0090308,GO:0090309,GO:0097159,GO:0098732,GO:0140096,GO:0140110,GO:1901363,GO:1901564,GO:1901983,GO:1901984,GO:1902275,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903708,GO:1905268,GO:1905269,GO:1990391,GO:2000026,GO:2000112,GO:2000113,GO:2000618,GO:2000619,GO:2000756,GO:2000757,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.transcription corepressor activity
EggNOG OGsKOG1194@1,KOG1194@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929615.6316404-CDS-H-elongata_contig108858:1079..12141622929615.6316404-CDS-H-elongata_contig108858:1079..1214Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108858 1080..1214 +
1691679092.3281012-CDS-H-elongata_contig108858:1079..12141691679092.3281012-CDS-H-elongata_contig108858:1079..1214Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108858 1080..1214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108858.717.1prot_H-elongata_contig108858.717.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108858 1080..1214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108858.717.1

>prot_H-elongata_contig108858.717.1 ID=prot_H-elongata_contig108858.717.1|Name=mRNA_H-elongata_contig108858.717.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
LSLHQVFDKVAQEVEGKTVGEVVEFYYMWKKTHHYKLWKSMWRAE
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mRNA from alignment at H-elongata_contig108858:1080..1214+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108858.717.1 ID=mRNA_H-elongata_contig108858.717.1|Name=mRNA_H-elongata_contig108858.717.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig108858:1080..1214+ (Himanthalia elongata Himel1 dioecious)
CTATCGCTGCACCAGGTGTTTGACAAGGTCGCACAGGAGGTGGAGGGCAA
GACGGTCGGCGAAGTGGTTGAGTTCTACTACATGTGGAAGAAGACTCACC
ACTACAAGCTGTGGAAGTCCATGTGGCGCGCCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig108858:1080..1214+

>mRNA_H-elongata_contig108858.717.1 ID=mRNA_H-elongata_contig108858.717.1|Name=mRNA_H-elongata_contig108858.717.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig108858:1080..1214+ (Himanthalia elongata Himel1 dioecious)
CTATCGCTGCACCAGGTGTTTGACAAGGTCGCACAGGAGGTGGAGGGCAA
GACGGTCGGCGAAGTGGTTGAGTTCTACTACATGTGGAAGAAGACTCACC
ACTACAAGCTGTGGAAGTCCATGTGGCGCGCCGAGCTATCGCTGCACCAG
GTGTTTGACAAGGTCGCACAGGAGGTGGAGGGCAAGACGGTCGGCGAAGT
GGTTGAGTTCTACTACATGTGGAAGAAGACTCACCACTACAAGCTGTGGA
AGTCCATGTGGCGCGCCGAG
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