mRNA_H-elongata_contig10875.710.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10875.710.1
Unique NamemRNA_H-elongata_contig10875.710.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10875.710.1 vs. uniprot
Match: UPI00158A6BAB (hypothetical protein n=1 Tax=Victivallis sp. Marseille-Q1083 TaxID=2717288 RepID=UPI00158A6BAB)

HSP 1 Score: 50.1 bits (118), Expect = 4.790e-5
Identity = 33/85 (38.82%), Postives = 46/85 (54.12%), Query Frame = 1 
Query:    1 YSLRAVVSLKGATFTGNSG---VWGGGVAHFSSGSIWDYNVNNSGPTNVTDCTFDGNQATDGGAIYSTASYDMVVNSSFLENIAG 246
            Y+    V + G  F GNSG     GG +   S G++    + N+GP+ V+DCTF GN    GG IY   S  ++ N+ FL N+AG
Sbjct:  616 YASGKPVIITGTVFRGNSGPTSTMGGPMG--SGGALV---LTNAGPSEVSDCTFQGNMGYYGGGIYVMGSQVVMNNNRFLGNVAG 695
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10875.710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00158A6BAB4.790e-538.82hypothetical protein n=1 Tax=Victivallis sp. Marse... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10875contigH-elongata_contig10875:3750..4398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size262
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929615.0647247-CDS-H-elongata_contig10875:3749..39401622929615.0647247-CDS-H-elongata_contig10875:3749..3940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10875 3750..3940 -
1691679092.084496-CDS-H-elongata_contig10875:3749..39401691679092.084496-CDS-H-elongata_contig10875:3749..3940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10875 3750..3940 -
1622929615.0827022-CDS-H-elongata_contig10875:4328..43981622929615.0827022-CDS-H-elongata_contig10875:4328..4398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10875 4329..4398 -
1691679092.0963373-CDS-H-elongata_contig10875:4328..43981691679092.0963373-CDS-H-elongata_contig10875:4328..4398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10875 4329..4398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10875.710.1prot_H-elongata_contig10875.710.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10875 3750..4398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10875.710.1

>prot_H-elongata_contig10875.710.1 ID=prot_H-elongata_contig10875.710.1|Name=mRNA_H-elongata_contig10875.710.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
YSLRAVVSLKGATFTGNSGVWGGGVAHFSSGSIWDYNVNNSGPTNVTDCT
FDGNQATDGGAIYSTASYDMVVNSSFLENIAGRSWE*
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mRNA from alignment at H-elongata_contig10875:3750..4398-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10875.710.1 ID=mRNA_H-elongata_contig10875.710.1|Name=mRNA_H-elongata_contig10875.710.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=649bp|location=Sequence derived from alignment at H-elongata_contig10875:3750..4398- (Himanthalia elongata Himel1 dioecious)
TATTCTTTAAGGGCCGTCGTGTCTTTAAAAGGAGCAACCTTCACTGGGAA
TAGTGGCGTCTGGGGTGGAGGTAGGTGGACAGCAAACATTTAGACGCCTT
CGGTGTTGGACGGGTTAAGGAGTTAAGATCTAGAACGGCGCCAAGGCCGA
TGTTTATTTTTCAAAGGCTGTCGTCTCTTTTAAAGGGCGAAGATTCACTG
GGATAAGTGGCCTCTGGGCTAAAGGTAGGTCAGGAGCACGACTGTGGAAG
CGTGATGTGTTGAAAATGATTGAAGATCCAGCGGTGTAATGGTGGGAGGT
AGCTACGCTATATCGCCAGGTCACTGCTTAGTAGTGGTAAGGCTGTACAA
AATCGCCGCGGTAGATTTACATTGAAGGGCTATGGAGATATATCAATCTA
GTCTAAGCCACGATTGCCAAACGTTTACCGCAAAATGCCCCGATCCACAC
GCAATCAGGTGTTGCACATTTTTCATCGGGATCCATATGGGACTATAACG
TGAATAACTCCGGCCCCACCAATGTTACGGATTGCACGTTCGATGGCAAT
CAGGCAACGGACGGAGGAGCCATATATAGTACTGCGAGTTACGACATGGT
CGTGAATTCCTCTTTCTTAGAAAATATTGCCGGTAGGTCTTGGGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig10875:3750..4398-

>mRNA_H-elongata_contig10875.710.1 ID=mRNA_H-elongata_contig10875.710.1|Name=mRNA_H-elongata_contig10875.710.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig10875:3750..4398- (Himanthalia elongata Himel1 dioecious)
TATTCTTTAAGGGCCGTCGTGTCTTTAAAAGGAGCAACCTTCACTGGGAA
TAGTGGCGTCTGGGGTGGAGTATTCTTTAAGGGCCGTCGTGTCTTTAAAA
GGAGCAACCTTCACTGGGAATAGTGGCGTCTGGGGTGGAGGTGTTGCACA
TTTTTCATCGGGATCCATATGGGACTATAACGTGAATAACTCCGGCCCCA
CCAATGTTACGGATTGCACGTTCGATGGCAATCAGGCAACGGACGGAGGA
GCCATATATAGTACTGCGAGTTACGACATGGTCGTGAATTCCTCTTTCTT
AGAAAATATTGCCGGTAGGTCTTGGGAGTGAGTGTTGCACATTTTTCATC
GGGATCCATATGGGACTATAACGTGAATAACTCCGGCCCCACCAATGTTA
CGGATTGCACGTTCGATGGCAATCAGGCAACGGACGGAGGAGCCATATAT
AGTACTGCGAGTTACGACATGGTCGTGAATTCCTCTTTCTTAGAAAATAT
TGCCGGTAGGTCTTGGGAGTGA
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