mRNA_H-elongata_contig10875.709.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10875.709.1
Unique NamemRNA_H-elongata_contig10875.709.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 1.160e-80
Identity = 142/277 (51.26%), Postives = 188/277 (67.87%), Query Frame = 2
Query:  446 ATIGPIAILGALAVIYRFAVIRNGHSIRAIRVTKNKHLSVALFLVFLLYSSISYTIFQTFACDLMDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTNRYRIENVDAPAWTGFQSGPERFYSVDAGKTLWGPYKRNRYYYEVVECSRRVVLAGLAVFIYPGSSAQIAIEVLFAVLFYAVFEILSPFANPLEMWLYRSGAWIIYLSMYLALLLR------ESYSNNVFAWLLIAVHGCMALVVIIYAFWQRFHV*EKSSLVA 1258
            ATIGP+ +LGALA+ Y  +  RN HS   I+  K+KHLS+ALF++F++YSS+S+ IFQTF C+ +D GV YLRADYSL C TD HT    YA +M+ VYP GIPA F  WL +NR+ +  VDA    G  +  +   ++   + LW PYK  RYY+EVVEC RR+ L GLAVFIYPGS+AQ+A+EV+FA  F  + ++LSPFA+PL+ WLYRSGAW+I++SM+L LLL+      +S S  +FA LLI+ H  M L + + A         K SLVA
Sbjct:  124 ATIGPLVVLGALALTYAVSRSRNRHSPAGIQTAKHKHLSIALFIMFVVYSSVSFNIFQTFVCETLDDGVEYLRADYSLVCSTDTHTAMKVYAGLMIFVYPFGIPAFFTLWLVSNRHDLVKVDANG--GSTATAKSLGNLQPMRDLWAPYKPRRYYFEVVECGRRIALTGLAVFIYPGSAAQVALEVVFAAFFIGISDVLSPFADPLDAWLYRSGAWVIFISMFLTLLLKVDASDEDSQSQELFAKLLISAHVGMVLAIAVQAVLS-----VKGSLVA 393          
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 1.720e-73
Identity = 136/263 (51.71%), Postives = 177/263 (67.30%), Query Frame = 2
Query:  437 VCLATIGPIAILGALAVIYRFAVIRNGHSIRAIRVTKNKHLSVALFLVFLLYSSISYTIFQTFACDLMDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTNRYRIENVDAPAWTGFQSGPERFYSVDAGKTLWGPYKRNRYYYEVVECSRRVVLAGLAVFIYPGSSAQIAIEVLFAVLFYAVFEILSPFANPLEMWLYRSGAWIIYLSMYLALLLR------ESYSNNVFAWLLIAVHGCMALVVII 1207
            +  +TI P+AILG LA  +  A   N HS   +R   +KHLS+ALF+VF +YSS+S+TIFQTF C+ +D  V YLRADYSL C T  HT    YA +MVLVYP+GIPAVFAWWL +NR  +    +    G  + PE    +   K LW PYK  RY+YE+VEC RR+VL GLAVF++PG++AQ+AIEV FA     VFE+L+PF +P++ WLYRSGA +++ SMYLALLL+       S S  VFA +L+A H  M L V++
Sbjct:  101 LAFSTIVPLAILGGLAAKHAIAKRNNRHSQVGMREATDKHLSIALFIVFAIYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNRKDLVQDRS----GGTTTPENLRPM---KDLWEPYKPRRYFYELVECGRRIVLTGLAVFLFPGTAAQVAIEVAFAAGLLVVFEVLAPFVDPMDAWLYRSGALVVFFSMYLALLLKVDASDENSESQQVFAAVLVAAHVSMVLAVLL 356          
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 1.110e-71
Identity = 132/261 (50.57%), Postives = 176/261 (67.43%), Query Frame = 2
Query:  449 TIGPIAILGALAVIYRFAVIRNGHSIRAIRVTKNKHLSVALFLVFLLYSSISYTIFQTFACDLMDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTNRYRIENVDAPAWTGFQSGPERFYSVDAGKTLWGPYKRNRYYYEVVECSRRVVLAGLAVFIYPGSSAQIAIEVLFAVLFYAVFEILSPFANPLEMWLYRSGAWIIYLSMYLALLLR------ESYSNNVFAWLLIAVHGCMALVVIIYA 1213
            T+GP+ + G LA  Y  +  RN HS   ++  K+KHLS+ALF+ F++YSS+S+ IFQTF C+ +D GV YLRADYSL C T +HT  M YA +M+LVYPVGIP V++WWL +NR+ +  V          G  R   +   + LW  YK  RYY+EV+EC RR+ L GLA F+ P S+AQ+AIEV+ A +F AV ++LSPFA+P + WLYR+GAWII+ SMYLALLL+      +S S   FA +LIA H  M LVV++ A
Sbjct:  801 TVGPLVVFGGLAATYAISRSRNRHSPAGMQAAKSKHLSIALFISFVVYSSVSFNIFQTFVCETLDDGVTYLRADYSLTCSTGVHTAMMAYAGLMILVYPVGIPTVYSWWLLSNRHDLVKVGTSG--NCLGGAPRLDHLQPMRDLWSSYKPRRYYFEVLECGRRIALTGLAAFLLPDSAAQVAIEVVLAAIFMAVSDVLSPFADPFDGWLYRTGAWIIFFSMYLALLLKVDASDEDSQSQAAFAKVLIAAHVGMVLVVLVQA 1059          
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Match: D7G8S0_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S0_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 1.140e-70
Identity = 124/259 (47.88%), Postives = 168/259 (64.86%), Query Frame = 2
Query:  446 ATIGPIAILGALAVIYRFAVIRNGHSIRAIRVTKNKHLSVALFLVFLLYSSISYTIFQTFACDLMDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTNRYRIENVDAPAWTGFQSGPERFYSVDAGKTLWGPYKRNRYYYEVVECSRRVVLAGLAVFIYPGSSAQIAIEVLFAVLFYAVFEILSPFANPLEMWLYRSGAWIIYLSMYLALLL---RESYSNNVFAWLLIAVHGCMALVVIIYA 1213
            ATI P+ + GA AV Y  +  RN HS   ++  K+KHLS+ LF++F++YSS+ + IFQTF C+ +D+G+ YLRADYSL C+T +H   M YA +M+ VYPVGIPA +AWWL   R+ +  V AP    F         +   + LW PYK +RYY+EVVEC  R+ L GLA F+ P S+AQ AIEV+ A +F AV ++LSPF +P + WLYR G WI   SMYLAL+     ++ S  VFA +LIA H  M  V+++ A
Sbjct:   89 ATICPLVVFGAQAVTYTVSKSRNRHSPAGMQAAKSKHLSITLFIMFVVYSSVPFNIFQTFVCERLDTGMDYLRADYSLTCYTGVHKAMMVYAGLMIFVYPVGIPAFYAWWLLFIRHYLVKVGAP--NNFLERVPELDHLQPMRDLWAPYKPHRYYFEVVECGHRIALTGLAAFLLPNSAAQAAIEVVLAAIFVAVSDVLSPFVDPFDAWLYRIGGWITCFSMYLALVDVSDEDNQSQAVFAKVLIAAHAGMVAVIVVQA 345          
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Match: D7FUB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB5_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 1.080e-69
Identity = 132/263 (50.19%), Postives = 173/263 (65.78%), Query Frame = 2
Query:  437 VCLATIGPIAILGALAVIYRFAVIRNGHSIRAIRVTKNKHLSVALFLVFLLYSSISYTIFQTFACDLMDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTNRYRIENVDAPAWTGFQSGPERFYSVDAGKTLWGPYKRNRYYYEVVECSRRVVLAGLAVFIYPGSSAQIAIEVLFAVLFYAVFEILSPFANPLEMWLYRSGAWIIYLSMYLALLLR------ESYSNNVFAWLLIAVHGCMALVVII 1207
            +  +T+ P+AILG LA  +  A   N HS   +R   +KHLS+ALF+VF  YSS+S+TIFQTF C+ +D  V YLRADYSL C T  HT    YA +MVLVYP+GIPAVFAWWL +NR  +    +       SG     ++   K LW PYK  RY+YE+VEC RR+ L GLAVF++PG++AQ+AIEV FA     VFE+L+PF +P++  LYRSGA +++ SMYLALLL+       S S  VFA +L+A H  M L V++
Sbjct:   79 LAFSTLLPLAILGGLAATHAIAKRNNRHSQVGMREATDKHLSIALFIVFATYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNRKDLVRERS-------SGTATPENLRPMKDLWEPYKPRRYFYELVECGRRIGLTGLAVFLFPGTAAQVAIEVAFAAGLLVVFEVLAPFVDPVDAGLYRSGALVVFYSMYLALLLKVDASDESSESQQVFAAVLVAAHVSMVLAVLL 334          
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 9.330e-69
Identity = 134/265 (50.57%), Postives = 176/265 (66.42%), Query Frame = 2
Query:  428 FTSVCLATIGPIAILGALAVIYRFAVIRNGHSIRAIRVTKNKHLSVALFLVFLLYSSISYTIFQTFACDLMDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTNRYRIENVDAPAWTGFQSGPERFYSVDAGKTLWGPYKRNRYYYEVVECSRRVVLAGLAVFIYPGSSAQIAIEVLFAVLFYAVFEILSPFANPLEMWLYRSGAWIIYLSMYLALLLR------ESYSNNVFAWLLIAVHGCMALVVI 1204
            +  + +ATIGP+ +LG L   Y  A  RN H   A+R  + +HLSV LF++F++Y+++SYTIF+TF CD +D G +YLRADYSL C T +HT +  YA + VLVYPVGIP VF WWLF NR+ ++  D       +S  E   + D    LW PYK + YYYEVVEC RR+ L G AVFIYP SSAQ+AI +L A +F  V EILSPFA P+EMWLYR+G ++++ SMYLALLLR         S  VF+ +++  H  M LVV+
Sbjct:  774 YDRLLMATIGPVLVLGLLGCTYLVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIPCVFGWWLFKNRHELKQEDR------ESQAELRPAAD----LWEPYKPSAYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSGVIVIAHVAMFLVVV 1028          
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 1.710e-68
Identity = 130/266 (48.87%), Postives = 174/266 (65.41%), Query Frame = 2
Query:  428 FTSVCLATIGPIAILGALAVIYRFAVIRNGHSIRAIRVTKNKHLSVALFLVFLLYSSISYTIFQTFACDLMDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTNRYRIENVDAPAWTGFQSGPERFYSVDAGKTLWGPYKRNRYYYEVVECSRRVVLAGLAVFIYPGSSAQIAIEVLFAVLFYAVFEILSPFANPLEMWLYRSGAWIIYLSMYLALLLR------ESYSNNVFAWLLIAVHGCMALVVII 1207
            +  + +ATIGP+ +LG L   Y  A  RN H   A+R  + +HLSV LF++F++Y+++SYTIF+TF CD +D G +YLRADYSL C T +HT +  YA + VLVYPVGIP +F WWLF NR+ ++  D       +   +          LW PYK + YYYEVVEC RR+ L G AVFIYP SSAQ+AI +L A +F  V EILSPFA P+EMWLYR+G ++++ SMYLALLLR         S  VF+ +++  H  M LVV++
Sbjct:  755 YDRLLMATIGPVLVLGLLGCTYVVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIPCIFGWWLFKNRHELKQEDREGQAELRPAAD----------LWEPYKPSAYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSGVIVMAHVAMFLVVVV 1010          
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 7.520e-66
Identity = 129/266 (48.50%), Postives = 173/266 (65.04%), Query Frame = 2
Query:  428 FTSVCLATIGPIAILGALAVIYRFAVIRNGHSIRAIRVTKNKHLSVALFLVFLLYSSISYTIFQTFACDLMDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTNRYRIENVDAPAWTGFQSGPERFYSVDAGKTLWGPYKRNRYYYEVVECSRRVVLAGLAVFIYPGSSAQIAIEVLFAVLFYAVFEILSPFANPLEMWLYRSGAWIIYLSMYLALLLR------ESYSNNVFAWLLIAVHGCMALVVII 1207
            +  + L TI P  +LG L   Y            A+ V K++HLSVALF++F++Y+++SYTIF+TF CD +D G +YLR+DYSL C T+ HT +  YA +M+LVYPVGIP VF WWLF +R+ ++          Q G ER   +     LW PYK + YYYEVVEC RR+ L G AVFIYP SSAQ+AI +L A++F  V E LSPFA P+EMWLYR+G ++++ SMYLALLLR       + S  VF+ +L+  H  M LVV++
Sbjct:  779 YDRLLLTTICPAVVLGLLGCTYL-----------AMGVVKHRHLSVALFIMFVIYATVSYTIFETFVCDPLDDGNSYLRSDYSLTCDTETHTAYRVYAGLMILVYPVGIPCVFGWWLFKHRHELK----------QEGRERRAVLKPAADLWEPYKPSTYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAIVFMVVSEFLSPFARPVEMWLYRTGHYVVFASMYLALLLRVDVSDERNQSQEVFSGVLVIAHAAMLLVVVL 1023          
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Match: A0A6H5L0E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E1_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 6.000e-60
Identity = 122/272 (44.85%), Postives = 165/272 (60.66%), Query Frame = 2
Query:  527 RAIRVTKNKHLSVALFLVFLLYSSISYTIFQTFACDLMDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTNRYRIENVDAPAWTGFQSGPERFYSVDAGKTLWGPYKRNRYYYE---------------------------------------VVECSRRVVLAGLAVFIYPGSSAQIAIEVLFAVLFYAVFEILSPFANPLEMWLYRSGAWIIYLSMYLALLLR------ESYSNNVFAWLLIAVHGCMALVVII 1207
            +A+ V K++HLSVALF++F++Y+++SYTIF+TF CD +D G++YLRADYSL C T+ HT +  YA +M+LVYPVGIP VF WWLF +R+ ++          Q G ER  ++     LW PYK + YYYE                                       VVEC RR+ L G AVFIYP SSAQ+AI +L A++F  V E LSPFA P+EMWLYR+G ++++ SMYLALLLR       + S  VF+ +L+  H  M LVV++
Sbjct:    7 QAMGVVKHRHLSVALFVMFVIYATVSYTIFETFVCDPLDDGISYLRADYSLTCETETHTAYRVYAGLMILVYPVGIPCVFGWWLFKHRHELK----------QEGRERRAALKPAADLWEPYKPSTYYYEAAQPPPYLDKLPRRLSSQCLPCPPASADMPPSATPTLEKVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAIVFMVVSEFLSPFARPIEMWLYRTGHYVVFASMYLALLLRVDVSDENNQSQEVFSGVLVIAHAAMLLVVVL 268          
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 2.480e-58
Identity = 121/269 (44.98%), Postives = 172/269 (63.94%), Query Frame = 2
Query:  428 FTSVCLATIGPIAILGALAVIYRFAVIRNGHSIRAIRVTKNKHLSVALFLVFLLYSSISYTIFQTFACDLMDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTNRYRIENVDAPAWTGFQSGPERFYSVDAGKTLWGPYKRNRYYYEVVECSRRVVLAGLAVFIYPGSSAQIAIEVLFAVLFYAVFEILSPFANPLEMWLYRSGAWIIYLSMYLALLLRESYSN------NVFAWLLIAVHGCMALVVIIYAF 1216
            F  + +ATIGP+ +L  LA+ +     RN  S  A+R  KNKHLS ALF++F +YSS+S+T+FQTF CD +D GV+YLRADYSL C T  +  F  YA +MV VYP+GIPA FAW L +NR  ++  D           +R  ++     LW  YK +RYYYE++E  RR+VL G+AVF+ PGSSAQ+A+ +L AV+F  + E LSPF   ++M LYR G  ++  S+Y+ALLL+ + S       + F  +LI  + CMA+ +++ +F
Sbjct:  766 FDRLLIATIGPVVVLALLALTFVVGRKRNIDSEAAVRAVKNKHLSAALFVMFFIYSSVSFTVFQTFVCDTLDDGVSYLRADYSLTCDTPRYGAFRGYAAVMVCVYPIGIPATFAWLLGSNRQDLQKADR----------DRLANLQPLGDLWEAYKPSRYYYEIIEYVRRIVLTGVAVFVLPGSSAQMAVVLLLAVVFLFISESLSPFTKKIDMALYRWGNGVVLASIYVALLLKVNVSEEGSETLSAFVVVLILANVCMAITLVVQSF 1024          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10875.709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPF7_ECTSI1.160e-8051.26Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5KHA3_9PHAE1.720e-7351.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWI3_9PHAE1.110e-7150.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8S0_ECTSI1.140e-7047.88Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
D7FUB5_ECTSI1.080e-6950.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTT9_ECTSI9.330e-6950.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L324_9PHAE1.710e-6848.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTU5_ECTSI7.520e-6648.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0E1_9PHAE6.000e-6044.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSF5_9PHAE2.480e-5844.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10875contigH-elongata_contig10875:789..2695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.2
Seed ortholog evalue7.3e-48
Seed eggNOG ortholog2880.D7FPF7
EggNOG OGs2D43J@1,2STRI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size1370
Cds size600
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.9193645-UTR-H-elongata_contig10875:788..9211622929614.9193645-UTR-H-elongata_contig10875:788..921Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10875 789..921 -
1691679091.9979439-UTR-H-elongata_contig10875:788..9211691679091.9979439-UTR-H-elongata_contig10875:788..921Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10875 789..921 -
1622929614.970048-UTR-H-elongata_contig10875:1539..17351622929614.970048-UTR-H-elongata_contig10875:1539..1735Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10875 1540..1735 -
1691679092.0353327-UTR-H-elongata_contig10875:1539..17351691679092.0353327-UTR-H-elongata_contig10875:1539..1735Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10875 1540..1735 -
1622929614.9843082-UTR-H-elongata_contig10875:1766..18721622929614.9843082-UTR-H-elongata_contig10875:1766..1872Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10875 1767..1872 -
1691679092.0437489-UTR-H-elongata_contig10875:1766..18721691679092.0437489-UTR-H-elongata_contig10875:1766..1872Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10875 1767..1872 -
1622929615.001751-UTR-H-elongata_contig10875:2009..22991622929615.001751-UTR-H-elongata_contig10875:2009..2299Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10875 2010..2299 -
1691679092.0546737-UTR-H-elongata_contig10875:2009..22991691679092.0546737-UTR-H-elongata_contig10875:2009..2299Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10875 2010..2299 -
1622929615.0131896-UTR-H-elongata_contig10875:2650..26951622929615.0131896-UTR-H-elongata_contig10875:2650..2695Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10875 2651..2695 -
1691679092.06764-UTR-H-elongata_contig10875:2650..26951691679092.06764-UTR-H-elongata_contig10875:2650..2695Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10875 2651..2695 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.9358027-CDS-H-elongata_contig10875:921..10261622929614.9358027-CDS-H-elongata_contig10875:921..1026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10875 922..1026 -
1691679092.016179-CDS-H-elongata_contig10875:921..10261691679092.016179-CDS-H-elongata_contig10875:921..1026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10875 922..1026 -
1622929614.9540145-CDS-H-elongata_contig10875:1044..15391622929614.9540145-CDS-H-elongata_contig10875:1044..1539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10875 1045..1539 -
1691679092.0264914-CDS-H-elongata_contig10875:1044..15391691679092.0264914-CDS-H-elongata_contig10875:1044..1539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10875 1045..1539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10875.709.1prot_H-elongata_contig10875.709.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10875 922..1539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10875.709.1

>prot_H-elongata_contig10875.709.1 ID=prot_H-elongata_contig10875.709.1|Name=mRNA_H-elongata_contig10875.709.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=200bp
MDSGVAYLRADYSLECWTDIHTYFMTYARIMVLVYPVGIPAVFAWWLFTN
RYRIENVDAPAWTGFQSGPERFYSVDAGKTLWGPYKRNRYYYEVVECSRR
VVLAGLAVFIYPGSSAQIAIEVLFAVLFYAVFEILSPFANPLEMWLYRSG
AWIIYLSMYLALLLRESYSNNVFAWLLIAVHGCMALVVIIYAFWQRFHV*
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mRNA from alignment at H-elongata_contig10875:789..2695-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10875.709.1 ID=mRNA_H-elongata_contig10875.709.1|Name=mRNA_H-elongata_contig10875.709.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1907bp|location=Sequence derived from alignment at H-elongata_contig10875:789..2695- (Himanthalia elongata Himel1 dioecious)
GCTCAAGCGCCAGTAACTACTGCGCACAAGGCTACGAAGGTCCATGTGAG CGTTTTCTGTCAAATACTGTCGACATGTAATAATAGCACTATGTATACGA GACATATGTTTTGCTGAATAGTCTGGAAGCATCGCGGTGACGGCAAAAAT ACATTTTGTGTTTATTTCGTCCAAGAGGTTGTTCTAAAACCCGCATTACC GTATAAGAAATATTTGGACGCCGACTTCGGGGCCTAATCTCACGAATCGA CAGAGTGAGTGTTTTATTAAATAAGTAGGACTTAAAGTCACTCTTGTTGT AGCTTTGGGTCGTTTTACCTGATTGCTGAGCTCCACACTTTTTGAATGGA TTTGCCGCGCCTCCTATGTCGGGCATGTACGGCTCATTATTAAAAGATTG TGCGGTTTGCGAAGAGGGATTCACCCCCGGGTTTCAGTACAAGTGCTACG TATGTGAAGGATCTGAGAAATGGGCTGCCGTCTGCGGAGCCGCGGCGGTG GTTATCGTCGCATTATTCGTGATTGCCTTAGTGGTGGTCTACCTCGTTCG CATCGAGGATTGCCCGATTTCTGATAGGAGTGGCAGATGGGAGAGGGTGC TCATGGACTTCCGCGATATAGTTACACGCGCCATCCCGCTAAGCACTATC AAGATCGTGGTCGTTACGTGGCAGATCATCACGCAGGTAAGGCTTATTAT TCCTCAGTGGAGTCACGAGTGCAGTAGAAACTGGTGCATGCAGGAGGTCA GCTTGGAGGGACGTCTTCGTTCTCATATAACGATTAAATACATTGTACTG TTGTTCTCCCCTAAATGGAACAGATTTCCGGTGTGGTGACCATCGACTAC CCCCCGGCGTACGAGAGCTTCCTGGCAGCTCTTAGCGTCATCAATTTTAA CCTGGGGTCTTTTCTTTCACTAGCGTGTGTCGTAAAGACCAATTTTTACG AACGCCTTGTCTTGGCAACTATTGGACCGATCGCAATACTTGGTGCGCTA GCAGTTATCTACCGGTTTGCCGTTATACGGAACGGCCACTCGATTCGTGC GATAAGGGTGACAAAAAACAAGCACCTCTCCGTTGCACTATTTCTAGTCT TTCTCTTGTATTCCTCTATATCTTACACGATCTTCCAGACGTTTGCTTGC GATCTCATGGACTCTGGGGTAGCCTATCTGCGCGCCGATTACAGCCTTGA GTGCTGGACCGATATCCACACATACTTCATGACGTACGCAAGGATAATGG TCCTCGTGTATCCAGTTGGAATCCCGGCTGTATTTGCTTGGTGGTTATTT ACCAACCGATATAGAATCGAGAATGTAGATGCACCTGCCTGGACGGGGTT TCAGTCAGGGCCGGAGCGCTTTTATTCTGTAGACGCTGGCAAAACCCTCT GGGGACCATACAAGCGGAACCGGTACTACTACGAAGTTGTCGAGTGCAGT AGACGGGTTGTGCTAGCTGGCCTTGCCGTGTTCATCTACCCCGGGAGTTC GGCGCAGATAGCAATCGAAGTGTTATTTGCGGTACTGTTCTACGCCGTGT TTGAGATTCTAAGTCCATTCGCCAACCCATTAGAGATGTGGCTGTACCGT TCCGGGGCATGGATTATATATCTCAGCATGTACCTTGCGTTGCTCTTGAG GGTAGATGTCACGGACGAGGAGAGCTATAGCAACAATGTGTTCGCCTGGC TGCTGATCGCCGTTCACGGCTGTATGGCGTTGGTAGTAATCATTTACGCG TTCTGGCAACGTTTTCATGTGTGAGAAAAGTCTAGCTTGGTTGCGAAAAC CTTTTGGCTTGTCGATATGGGTGCTCAAACGTTAGGTTCATTTAAATTGA AATAACCGCGCAATCCGGTCTTGTAATTTATTCATTGTAAGCTACATGTG TAACCCG
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Coding sequence (CDS) from alignment at H-elongata_contig10875:789..2695-

>mRNA_H-elongata_contig10875.709.1 ID=mRNA_H-elongata_contig10875.709.1|Name=mRNA_H-elongata_contig10875.709.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1200bp|location=Sequence derived from alignment at H-elongata_contig10875:789..2695- (Himanthalia elongata Himel1 dioecious)
ATGGACTCTGGGGTAGCCTATCTGCGCGCCGATTACAGCCTTGAGTGCTG
GACCGATATCCACACATACTTCATGACGTACGCAAGGATAATGGTCCTCG
TGTATCCAGTTGGAATCCCGGCTGTATTTGCTTGGTGGTTATTTACCAAC
CGATATAGAATCGAGAATGTAGATGCACCTGCCTGGACGGGGTTTCAGTC
AGGGCCGGAGCGCTTTTATTCTGTAGACGCTGGCAAAACCCTCTGGGGAC
CATACAAGCGGAACCGGTACTACTACGAAGTTGTCGAGTGCAGTAGACGG
GTTGTGCTAGCTGGCCTTGCCGTGTTCATCTACCCCGGGAGTTCGGCGCA
GATAGCAATCGAAGTGTTATTTGCGGTACTGTTCTACGCCGTGTTTGAGA
TTCTAAGTCCATTCGCCAACCCATTAGAGATGTGGCTGTACCGTTCCGGG
GCATGGATTATATATCTCAGCATGTACCTTGCGTTGCTCTTGAGGATGGA
CTCTGGGGTAGCCTATCTGCGCGCCGATTACAGCCTTGAGTGCTGGACCG
ATATCCACACATACTTCATGACGTACGCAAGGATAATGGTCCTCGTGTAT
CCAGTTGGAATCCCGGCTGTATTTGCTTGGTGGTTATTTACCAACCGATA
TAGAATCGAGAATGTAGATGCACCTGCCTGGACGGGGTTTCAGTCAGGGC
CGGAGCGCTTTTATTCTGTAGACGCTGGCAAAACCCTCTGGGGACCATAC
AAGCGGAACCGGTACTACTACGAAGTTGTCGAGTGCAGTAGACGGGTTGT
GCTAGCTGGCCTTGCCGTGTTCATCTACCCCGGGAGTTCGGCGCAGATAG
CAATCGAAGTGTTATTTGCGGTACTGTTCTACGCCGTGTTTGAGATTCTA
AGTCCATTCGCCAACCCATTAGAGATGTGGCTGTACCGTTCCGGGGCATG
GATTATATATCTCAGCATGTACCTTGCGTTGCTCTTGAGGGAGAGCTATA
GCAACAATGTGTTCGCCTGGCTGCTGATCGCCGTTCACGGCTGTATGGCG
TTGGTAGTAATCATTTACGCGTTCTGGCAACGTTTTCATGTGTGAGAGAG
CTATAGCAACAATGTGTTCGCCTGGCTGCTGATCGCCGTTCACGGCTGTA
TGGCGTTGGTAGTAATCATTTACGCGTTCTGGCAACGTTTTCATGTGTGA
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