mRNA_H-elongata_contig10864.704.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10864.704.1
Unique NamemRNA_H-elongata_contig10864.704.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10864.704.1 vs. uniprot
Match: D7FY33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY33_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 8.220e-67
Identity = 97/106 (91.51%), Postives = 103/106 (97.17%), Query Frame = 1 
Query:    1 RFGPYFVEPMVAGLKDNDKPFISAFDLIGAPVTTDDFVVGGTCTNNLYGMCESLYRPNMDKDELFETMAQCLLSSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 318
            RFGPYFVEP+VAGLK+++ PFISAFDLIGAPV TDDFVVGGTCTNNLYGMCES YRP+MDKDELFETMAQCLL+SVDRDALSGWGGVVHIITPEGIMSKTLKGRQD
Sbjct:   99 RFGPYFVEPIVAGLKEDNTPFISAFDLIGAPVVTDDFVVGGTCTNNLYGMCESFYRPDMDKDELFETMAQCLLTSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 204
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BLAST of mRNA_H-elongata_contig10864.704.1 vs. uniprot
Match: A0A6V1UZ14_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UZ14_HETAK)

HSP 1 Score: 189 bits (480), Expect = 3.300e-59
Identity = 87/106 (82.08%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:    1 RFGPYFVEPMVAGLKDNDKPFISAFDLIGAPVTTDDFVVGGTCTNNLYGMCESLYRPNMDKDELFETMAQCLLSSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 318
            RFGPYFVEP+VAGLKD++ PFISA DLIGAPV T DFVV GTCTNNLYGMCES Y+P M+ DELFETM+QCLL+SVDRDALSGWG VVHIITPEG+ SKTLKGR D
Sbjct:   99 RFGPYFVEPVVAGLKDDNTPFISAMDLIGAPVLTSDFVVAGTCTNNLYGMCESFYKPEMEPDELFETMSQCLLASVDRDALSGWGAVVHIITPEGVTSKTLKGRMD 204
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BLAST of mRNA_H-elongata_contig10864.704.1 vs. uniprot
Match: A0A6U4EA60_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EA60_9STRA)

HSP 1 Score: 184 bits (466), Expect = 4.420e-57
Identity = 85/106 (80.19%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 RFGPYFVEPMVAGLKDNDKPFISAFDLIGAPVTTDDFVVGGTCTNNLYGMCESLYRPNMDKDELFETMAQCLLSSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 318
            RFGPYFVEPMV GL  +   F+SA DLIGAPV TDDFVV GTCTNNLYGMCESLYRP+MDKDELFET+AQCL +SVDRDA+SGWGG VH+ITPEG+ SKTLK RQD
Sbjct:   99 RFGPYFVEPMVCGLNADGSAFLSAMDLIGAPVFTDDFVVQGTCTNNLYGMCESLYRPDMDKDELFETLAQCLQASVDRDAVSGWGGEVHVITPEGVYSKTLKSRQD 204
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BLAST of mRNA_H-elongata_contig10864.704.1 vs. uniprot
Match: B7G8Z3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G8Z3_PHATC)

HSP 1 Score: 178 bits (452), Expect = 5.930e-55
Identity = 81/106 (76.42%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 RFGPYFVEPMVAGLKDNDKPFISAFDLIGAPVTTDDFVVGGTCTNNLYGMCESLYRPNMDKDELFETMAQCLLSSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 318
            RFGPYFVEP+VAGL + +KPF+SA DLIGAPV  DDFVV GTCT NLYGMCESLYRP+++ +ELFET+AQ LLSSVDRDA+SGWGGVVHIIT +G+ +K LKGRQD
Sbjct:   99 RFGPYFVEPIVAGLNEKNKPFLSAMDLIGAPVQADDFVVSGTCTGNLYGMCESLYRPDLEPEELFETIAQALLSSVDRDAISGWGGVVHIITKDGVTTKELKGRQD 204
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BLAST of mRNA_H-elongata_contig10864.704.1 vs. uniprot
Match: A0A6U6IRL2_9STRA (Hypothetical protein n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A6U6IRL2_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.690e-54
Identity = 80/106 (75.47%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 RFGPYFVEPMVAGLKDNDKPFISAFDLIGAPVTTDDFVVGGTCTNNLYGMCESLYRPNMDKDELFETMAQCLLSSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 318
            RFGPYF+EP+VAGL +N KPF+S  DLIGAPV TDDFVV GT T NLYGMCE+LY+P+M+ D+LFET+AQ LL+SVDRDALSGWGGVVHIIT +G+MS+ LKGRQD
Sbjct:   99 RFGPYFIEPVVAGLDENGKPFLSGMDLIGAPVYTDDFVVSGTATGNLYGMCETLYKPDMEADQLFETLAQALLASVDRDALSGWGGVVHIITKDGVMSRELKGRQD 204
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BLAST of mRNA_H-elongata_contig10864.704.1 vs. uniprot
Match: A0A7S2XNS4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNS4_9STRA)

HSP 1 Score: 175 bits (444), Expect = 9.720e-54
Identity = 79/106 (74.53%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 RFGPYFVEPMVAGLKDNDKPFISAFDLIGAPVTTDDFVVGGTCTNNLYGMCESLYRPNMDKDELFETMAQCLLSSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 318
            RFGPYFVEP+VAGL +  KPF+S  DLIGAPV TDDFVV GTCT N+YGMCE+LY+P+M+ D+LFET+AQ LL+SVDRDALSGWGGVVHIIT +G+ S+ LKGRQD
Sbjct:   99 RFGPYFVEPIVAGLDNKGKPFLSGMDLIGAPVYTDDFVVSGTCTGNMYGMCETLYKPDMEPDQLFETLAQALLASVDRDALSGWGGVVHIITKDGVTSRELKGRQD 204
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BLAST of mRNA_H-elongata_contig10864.704.1 vs. uniprot
Match: A0A6U1MII2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MII2_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.960e-53
Identity = 80/106 (75.47%), Postives = 90/106 (84.91%), Query Frame = 1 
Query:    1 RFGPYFVEPMVAGLKDNDKPFISAFDLIGAPVTTDDFVVGGTCTNNLYGMCESLYRPNMDKDELFETMAQCLLSSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 318
            RFGPYFVEP++AGLKD++ PF+S  DLIG    TDDFVV GTCT NLYGMCESLYRP+   DELFET++QCLLSSVDRDA+SGWG VVHIITP+GI SK LKGR D
Sbjct:   99 RFGPYFVEPIIAGLKDDNTPFLSTMDLIGCESKTDDFVVAGTCTPNLYGMCESLYRPDQGPDELFETLSQCLLSSVDRDAVSGWGAVVHIITPDGITSKMLKGRMD 204
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BLAST of mRNA_H-elongata_contig10864.704.1 vs. uniprot
Match: A0A6U1HBX0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1HBX0_9STRA)

HSP 1 Score: 172 bits (435), Expect = 2.260e-52
Identity = 78/106 (73.58%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 RFGPYFVEPMVAGLKDNDKPFISAFDLIGAPVTTDDFVVGGTCTNNLYGMCESLYRPNMDKDELFETMAQCLLSSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 318
            RFGPYFVEP+V GLKD+  PF+   DLIGAPV TDD+VV GTCT NL GMCES++RP+M  DELFET++QCLL+SVDRDALSGWG VVH+ITP+GI SK+LKGR D
Sbjct:   99 RFGPYFVEPVVCGLKDDGSPFLCGMDLIGAPVYTDDYVVSGTCTPNLNGMCESMWRPDMAPDELFETISQCLLASVDRDALSGWGAVVHVITPQGITSKSLKGRMD 204
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BLAST of mRNA_H-elongata_contig10864.704.1 vs. uniprot
Match: A0A7S2EKL8_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EKL8_TRICV)

HSP 1 Score: 172 bits (435), Expect = 2.260e-52
Identity = 79/106 (74.53%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 RFGPYFVEPMVAGLKDNDKPFISAFDLIGAPVTTDDFVVGGTCTNNLYGMCESLYRPNMDKDELFETMAQCLLSSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 318
            RFGPYF+EP+V GL+D+ KPF+SA DLIG PV  DDFVV GT T NLYGMCESLYR +M  DELFET+AQ LL+SVDRDALSGWGGVVHIIT +G++S+ LKGRQD
Sbjct:   99 RFGPYFIEPVVVGLEDDGKPFLSAMDLIGCPVYADDFVVSGTATGNLYGMCESLYRKDMGPDELFETLAQALLASVDRDALSGWGGVVHIITEDGVISRELKGRQD 204
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BLAST of mRNA_H-elongata_contig10864.704.1 vs. uniprot
Match: A0A812ULN3_9DINO (PBC1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ULN3_9DINO)

HSP 1 Score: 171 bits (434), Expect = 2.510e-52
Identity = 79/106 (74.53%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 RFGPYFVEPMVAGLKDNDKPFISAFDLIGAPVTTDDFVVGGTCTNNLYGMCESLYRPNMDKDELFETMAQCLLSSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 318
            RFGP F  P+VAGL   DKPFISA D++GAPV TDDFVV GTCT NLYG CESLY  +M+ D+LFET+AQCLL++VDRDALSGWGGVVHIITP G+ SKTLK RQD
Sbjct:   91 RFGPLFANPVVAGLDAEDKPFISASDVVGAPVFTDDFVVSGTCTENLYGTCESLYEKDMEPDQLFETLAQCLLAAVDRDALSGWGGVVHIITPTGVSSKTLKARQD 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10864.704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY33_ECTSI8.220e-6791.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V1UZ14_HETAK3.300e-5982.08Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U4EA60_9STRA4.420e-5780.19Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
B7G8Z3_PHATC5.930e-5576.42Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A6U6IRL2_9STRA1.690e-5475.47Hypothetical protein n=2 Tax=Mediophyceae TaxID=58... [more]
A0A7S2XNS4_9STRA9.720e-5474.53Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6U1MII2_9STRA1.960e-5375.47Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U1HBX0_9STRA2.260e-5273.58Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2EKL8_TRICV2.260e-5274.53Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
A0A812ULN3_9DINO2.510e-5274.53PBC1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10864contigH-elongata_contig10864:7909..8987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.3
Seed ortholog evalue4.3e-46
Seed eggNOG ortholog2880.D7FY33
Preferred namePBC1
KEGG koko:K02735,ko:K03660
KEGG Pathwayko03050,ko03410,map03050,map03410
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005839,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0016020,GO:0019538,GO:0019774,GO:0031090,GO:0032991,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0098588,GO:0098805,GO:1901564,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0180@2759
EC3.4.25.1,4.2.99.18
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
Ec32 orthologEc-27_006930.1
Exons2
Model size321
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10864.704.1prot_H-elongata_contig10864.704.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10864 7909..8960 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.5949926-CDS-H-elongata_contig10864:7908..80521622929614.5949926-CDS-H-elongata_contig10864:7908..8052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10864 7909..8052 -
1691679091.8897507-CDS-H-elongata_contig10864:7908..80521691679091.8897507-CDS-H-elongata_contig10864:7908..8052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10864 7909..8052 -
1622929614.6140337-CDS-H-elongata_contig10864:8810..89601622929614.6140337-CDS-H-elongata_contig10864:8810..8960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10864 8811..8960 -
1691679091.8996391-CDS-H-elongata_contig10864:8810..89601691679091.8996391-CDS-H-elongata_contig10864:8810..8960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10864 8811..8960 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.6341126-UTR-H-elongata_contig10864:8960..89871622929614.6341126-UTR-H-elongata_contig10864:8960..8987Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10864 8961..8987 -
1691679091.9208415-UTR-H-elongata_contig10864:8960..89871691679091.9208415-UTR-H-elongata_contig10864:8960..8987Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10864 8961..8987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10864.704.1

>prot_H-elongata_contig10864.704.1 ID=prot_H-elongata_contig10864.704.1|Name=mRNA_H-elongata_contig10864.704.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
MVAGLKDNDKPFISAFDLIGAPVTTDDFVVGGTCTNNLYGMCESLYRPNM
DKDELFETMAQCLLSSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD*
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mRNA from alignment at H-elongata_contig10864:7909..8987-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10864.704.1 ID=mRNA_H-elongata_contig10864.704.1|Name=mRNA_H-elongata_contig10864.704.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1079bp|location=Sequence derived from alignment at H-elongata_contig10864:7909..8987- (Himanthalia elongata Himel1 dioecious)
AGATTCGGTCCCTATTTCGTGGAGCCCATGGTGGCGGGTCTGAAAGACAA
CGACAAGCCCTTCATATCGGCCTTTGACCTCATTGGAGCGCCGGTCACCA
CGGATGACTTTGTGGTCGGCGGGACGTGCACCAACAACCTCTACGGCATG
TGCGAGAGTCTGTACAGGCCAAACATGGTGAGTCGAAGTTCCGCGTGAAG
ATGAGTCGAACCGGGTGTCTCGTAGCTGATCGCTCGCGGGTTAGGATGGA
TCCTCGAGAGCTGGGCGGCTCTTGTCCAGTTTTGAGAGTCCGTGCAAACG
CCTCTTTGTAAAAGAGGGTGATATACAAAAATGCGTAAGCTACAGTCTGT
AGGTTGTAGAACTGTGTGGCGAACCCCTTCCCCCAACTCGGAAATTCAAA
ACGAACGCTTAAAGCGCCGTGGGACGAGGGTGTCGATTGGTCCCCGCCCC
TACAGACACATGGCATAGCGTACCCATAATCTTCGTGGCGGCCTTAACTC
CACTCGAGAGAGCGAACACCTTCCTCCTAAACCAACCCAACCCCAAAATG
ACGCTGGCGACGTACGAACAACCGAAAACCTTGGACATGCCGTTGCATTC
GGTCGCATTTGTTTGTCGGTTGGAGGCGTTTTTTTCGCCACTTAGTCTGC
AAATAATATATTTCATTTTCTGTGTGTATCAATCGCCTACCGTTCAGGCT
CTCCTCTCGACCCCACACACGACAGCGATAATCCTATTTACACCCAAAAA
TGTATACGGCGAATCTCTTCGATCTTGGTAAAAGCACAGGAAGGAACAAA
ATTCGTCCGAAAATGGTAGATTCATCCTCCCTTAGGTTAGTAGTGTTTTG
CGCTGCCTTCCGAGCGGTGCTCGTGGCGTCCTACCTCACGACCCCCCGTG
CTCCGTTACCATTTGTCACGTGCTGCCAACATCAGGACAAGGATGAGCTG
TTCGAGACGATGGCCCAATGTCTATTGTCGTCCGTTGATCGCGACGCGCT
TAGTGGGTGGGGAGGGGTGGTGCACATAATCACACCTGAAGGCATCATGT
CGAAGACACTCAAGGGACGACAGGACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig10864:7909..8987-

>mRNA_H-elongata_contig10864.704.1 ID=mRNA_H-elongata_contig10864.704.1|Name=mRNA_H-elongata_contig10864.704.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig10864:7909..8987- (Himanthalia elongata Himel1 dioecious)
ATGGTGGCGGGTCTGAAAGACAACGACAAGCCCTTCATATCGGCCTTTGA
CCTCATTGGAGCGCCGGTCACCACGGATGACTTTGTGGTCGGCGGGACGT
GCACCAACAACCTCTACGGCATGTGCGAGAGTCTGTACAGGCCAAACATG
ATGGTGGCGGGTCTGAAAGACAACGACAAGCCCTTCATATCGGCCTTTGA
CCTCATTGGAGCGCCGGTCACCACGGATGACTTTGTGGTCGGCGGGACGT
GCACCAACAACCTCTACGGCATGTGCGAGAGTCTGTACAGGCCAAACATG
GACAAGGATGAGCTGTTCGAGACGATGGCCCAATGTCTATTGTCGTCCGT
TGATCGCGACGCGCTTAGTGGGTGGGGAGGGGTGGTGCACATAATCACAC
CTGAAGGCATCATGTCGAAGACACTCAAGGGACGACAGGACTAAGACAAG
GATGAGCTGTTCGAGACGATGGCCCAATGTCTATTGTCGTCCGTTGATCG
CGACGCGCTTAGTGGGTGGGGAGGGGTGGTGCACATAATCACACCTGAAG
GCATCATGTCGAAGACACTCAAGGGACGACAGGACTAA
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