mRNA_H-elongata_contig108548.697.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108548.697.1
Unique NamemRNA_H-elongata_contig108548.697.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig108548.697.1 vs. uniprot
Match: A0A6H5KW24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW24_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 9.110e-52
Identity = 180/453 (39.74%), Postives = 221/453 (48.79%), Query Frame = 1 
Query:    1 QNNVPLERLRLAEDEFLAPPLPTAVTATAIATDATXXXXXXXXXXXXXXXXXXTGTPLKVEAAVAAA--------GSSVASLSVHSPSAGSSSSACVLTAAPPAPSISSTFSSSLTTRSGSSAARSTSAYGVGGRGAGEGSKGISSSSSLHGAVRRATITTVSAXXXXXXXXXXXXARMSTGRGVTDGRGGPVSVKKQDR-PRLSTGKYGRAPASVSAGGDASAGYPGATAAAPRKAVLSGGQLSHARSASDFSVRRGIIATANTS----------------ATRRVWVRDRVDSMKWRPGCLVADGERTLAATAAMASGGGGSGTDG-ASGLAARLDDGTIQTLRPDGLMDFPTVGGSAAAMAXXXXXXXXXXAGRGVRTPAAKLASLTGALRRHGRNAGLGWTGRDGXXXXXXXXXXATFCKEPATPHSWLCSRQPRTPLGFLPRLGRNSS 1281
            ++NVPLERLRL EDE+LAPP P A    A A+                       TP +VEA  AA+        GSS  SLSV +  + +S+   ++ AAP +PS++S   S+ +     S AR      + G       K ++SSSSL   V   +    ++               S     T   GG     KQDR  +LS GKY R   + +A G                  L G QL H  S      R G    A                   ATRRVWVRDR+D+M+WRPGCL+ +GE   AAT A      G+G +  AS   ARLDDGT+Q  RPDGLMDFPT GG+AAA             GR  R PAAKLAS+TGALRRH R+AG+G  G             ATFCKEPATPH+WLCSRQPRTPLGFLPR GR ++
Sbjct: 2131 EDNVPLERLRLGEDEYLAPPSPPATAKAAAASR----------------------TPPRVEAEPAASTAAAPSTPGSSTTSLSVQALLSPASTCPSIM-AAPASPSLASPAPSAASGAXXXSPARGXXXGALVG-------KPVASSSSLTQYVAAGSKGGRNSPKRGSAQRGSPRRATSASAVATASAGGSG---KQDRGSKLSAGKYVRTTTTSAAAG------------------LRGQQLVHGSSDPTSHRRGGAADKAGVGMWGSGSXXXXXXXXXXATRRVWVRDRIDAMRWRPGCLMTEGEAGFAATLASL----GAGVESPASNFVARLDDGTVQVPRPDGLMDFPTAGGTAAAAEAAAGSGT----GRAGRNPAAKLASITGALRRHSRSAGIG--GGSAGSEDDSGSSAATFCKEPATPHAWLCSRQPRTPLGFLPRFGRGAN 2522
[Close]
BLAST of mRNA_H-elongata_contig108548.697.1 vs. uniprot
Match: D8LBS8_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS8_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 4.770e-47
Identity = 109/170 (64.12%), Postives = 122/170 (71.76%), Query Frame = 1 
Query:  772 ATRRVWVRDRVDSMKWRPGCLVADGERTLAATAAMASGGGGSGTDGASGLAARLDDGTIQTLRPDGLMDFPTVGGSAAAMAXXXXXXXXXXAGRGVRTPAAKLASLTGALRRHGRNAGLGWTGRDGXXXXXXXXXXATFCKEPATPHSWLCSRQPRTPLGFLPRLGRNSS 1281
            ATRRVWVRDR+D+M+WRPGCL+ +GE   AAT A    GG S    AS   ARLDDGT+Q  RPDGLMDFPT GG+AAA            AGR  R PAAKLAS+TGALRRH R+AG+G  G   XXXXX     ATFCKEPATPH+WLCSRQPRTPLGFLPR GR ++
Sbjct:  831 ATRRVWVRDRIDAMRWRPGCLMTEGEAAFAATLASVGAGGESP---ASNFMARLDDGTVQVPRPDGLMDFPTAGGTAAAAEAAAGSG----AGRAGRNPAAKLASITGALRRHSRSAGIG--GXXXXXXXXSGGSAATFCKEPATPHAWLCSRQPRTPLGFLPRFGRGAN 991
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108548.697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KW24_9PHAE9.110e-5239.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBS8_ECTSI4.770e-4764.12HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108548contigH-elongata_contig108548:123..2174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.2
Seed ortholog evalue7e-46
Seed eggNOG ortholog2880.D8LBS8
KEGG koko:K10590
KEGG Pathwayko04120,map04120
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0032446,GO:0036211,GO:0042176,GO:0042752,GO:0042753,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0045732,GO:0048518,GO:0050789,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051603,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.protein ubiquitination
EggNOG OGsCOG5021@1,KOG4276@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size1797
Cds size1797
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.793719-CDS-H-elongata_contig108548:122..9681622929613.793719-CDS-H-elongata_contig108548:122..968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108548 123..968 -
1691679091.5913615-CDS-H-elongata_contig108548:122..9681691679091.5913615-CDS-H-elongata_contig108548:122..968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108548 123..968 -
1622929613.8096328-CDS-H-elongata_contig108548:1223..21741622929613.8096328-CDS-H-elongata_contig108548:1223..2174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108548 1224..2174 -
1691679091.6035526-CDS-H-elongata_contig108548:1223..21741691679091.6035526-CDS-H-elongata_contig108548:1223..2174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108548 1224..2174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108548.697.1prot_H-elongata_contig108548.697.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108548 123..2174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108548.697.1

>prot_H-elongata_contig108548.697.1 ID=prot_H-elongata_contig108548.697.1|Name=mRNA_H-elongata_contig108548.697.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=599bp
QNNVPLERLRLAEDEFLAPPLPTAVTATAIATDATTNTTLSKTSSTIATT
AMTTGTPLKVEAAVAAAGSSVASLSVHSPSAGSSSSACVLTAAPPAPSIS
STFSSSLTTRSGSSAARSTSAYGVGGRGAGEGSKGISSSSSLHGAVRRAT
ITTVSAAAGSNAVAAAAAARMSTGRGVTDGRGGPVSVKKQDRPRLSTGKY
GRAPASVSAGGDASAGYPGATAAAPRKAVLSGGQLSHARSASDFSVRRGI
IATANTSATRRVWVRDRVDSMKWRPGCLVADGERTLAATAAMASGGGGSG
TDGASGLAARLDDGTIQTLRPDGLMDFPTVGGSAAAMAEAAAAAGGSGAG
RGVRTPAAKLASLTGALRRHGRNAGLGWTGRDGGGGGEDDAAAATFCKEP
ATPHSWLCSRQPRTPLGFLPRLGRNSSGGGSDGGGQGGGGGSGSGGGASN
RGKGGKSGKESVEPPSLRRHFTTVSGGSDVSAAGGGKDRRGGGAGSGGGG
KAHNESSAASTNARGGSSGGRGGGAGRADDSRIVRGGKKISIFSGFGGAS
SNNSKGGGGRSRQRGSASLAGSGAASRAEDEEESVRAVPLQLEDEGLLQ
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mRNA from alignment at H-elongata_contig108548:123..2174-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108548.697.1 ID=mRNA_H-elongata_contig108548.697.1|Name=mRNA_H-elongata_contig108548.697.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2052bp|location=Sequence derived from alignment at H-elongata_contig108548:123..2174- (Himanthalia elongata Himel1 dioecious)
CAGAACAACGTACCCCTCGAGCGCTTGCGCCTCGCAGAAGACGAGTTCCT
TGCGCCACCCCTTCCGACCGCCGTAACGGCAACCGCCATAGCCACGGACG
CCACAACAAATACCACCCTCTCCAAGACATCTTCCACGATCGCTACCACG
GCAATGACTACGGGGACACCGCTCAAAGTAGAGGCAGCTGTGGCGGCGGC
GGGATCGAGCGTTGCCTCTCTGTCCGTGCACTCGCCGTCCGCGGGATCCT
CCTCCTCCGCGTGCGTCTTGACAGCCGCGCCCCCTGCGCCCTCGATTAGC
TCCACTTTTTCTTCCTCATTAACCACAAGGTCGGGTTCGTCCGCGGCTCG
CTCGACCTCGGCTTACGGCGTCGGAGGCAGAGGTGCAGGCGAAGGTAGTA
AGGGCATCTCGTCGTCGTCATCGCTGCATGGCGCAGTTCGCCGTGCCACG
ATCACCACGGTATCGGCTGCGGCGGGGTCAAACGCGGTAGCGGCAGCGGC
AGCAGCAAGGATGTCGACCGGACGAGGAGTTACAGACGGCCGCGGCGGCC
CTGTGAGCGTTAAAAAGCAAGACAGGCCCAGACTCTCCACCGGTAAGTAC
GGGAGAGCGCCGGCGAGCGTCTCGGCAGGTGGAGACGCGTCCGCTGGTTA
CCCCGGCGCGACCGCCGCCGCACCACGTAAGGCGGTCCTCAGCGGAGGAC
AGCTATCGCATGCGCGCTCGGCGTCCGATTTTTCCGTTAGGCGAGGTATA
ATCGCCACCGCAAACACTAGTGCAACGCGCCGCGTGTGGGTGAGAGATCG
CGTGGATTCCATGAAGTGGAGGCCGGGCTGCCTGGTGGCTGACGGAGAAA
GGACACTTGCGGCAACGGCGGCGATGGCTTCGGGAGGTGGAGGAAGCGGG
ACAGACGGTGCATCAGGCCTCGCGGCGCGCCTCGACGACGGCACCATCCA
GGTAGGGCAAGTGATTGTGTGGTCGGTCCGTCGACCAGGCAGGCTCTGAT
TTTTCTCGCGAAATGATGATTTTTTTTAAGCTGCCGTGATCTCTGATCGC
GGTAAGCCTCAACCTCTACTGGTAAACATTCACCACAGCGTGCGGTACCT
CTTCCTCTCATCATCGCCCTGTACCAGAATCGACACAAAAAAAATGCGCC
CATCCGGTATTGTTTACCTTCGAAGCCTCAACGCTCCCTCCCATCTACCA
CCGCAGACCCTCCGACCGGATGGACTTATGGACTTTCCGACTGTGGGGGG
CTCCGCTGCGGCGATGGCGGAAGCAGCGGCTGCCGCGGGTGGCTCGGGTG
CCGGGCGAGGCGTGCGCACCCCCGCCGCGAAGCTCGCCTCACTCACGGGT
GCACTTCGACGCCACGGCCGCAACGCCGGGCTCGGTTGGACCGGCAGAGA
CGGTGGCGGTGGTGGTGAAGACGACGCTGCCGCGGCGACCTTCTGCAAGG
AGCCCGCAACCCCTCACTCCTGGCTATGTAGCCGTCAGCCGCGCACCCCG
CTGGGATTCCTGCCCAGGCTTGGCAGAAACAGCAGCGGCGGGGGAAGCGA
CGGTGGTGGCCAGGGAGGAGGGGGAGGATCAGGTTCGGGAGGTGGAGCAA
GCAACCGCGGCAAAGGGGGAAAGAGTGGCAAAGAGAGCGTTGAACCCCCC
AGCCTTCGGCGGCATTTTACTACCGTATCCGGGGGGTCCGACGTCTCGGC
GGCGGGGGGAGGGAAGGACAGGCGTGGCGGTGGCGCCGGAAGTGGAGGTG
GAGGAAAGGCGCACAATGAATCCAGCGCGGCGTCAACAAATGCACGGGGT
GGTTCTTCCGGGGGACGCGGCGGCGGAGCGGGTAGAGCGGACGACTCCAG
GATCGTTCGAGGAGGAAAGAAGATATCAATTTTCTCTGGTTTCGGCGGGG
CTTCTTCTAACAACAGCAAAGGCGGGGGGGGGCGGTCGAGGCAGCGGGGC
AGCGCCTCCTTGGCAGGATCAGGGGCGGCCAGTAGGGCGGAAGATGAAGA
AGAATCTGTCCGGGCGGTGCCGCTCCAGCTGGAAGACGAGGGTTTGTTGC
AG
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Coding sequence (CDS) from alignment at H-elongata_contig108548:123..2174-

>mRNA_H-elongata_contig108548.697.1 ID=mRNA_H-elongata_contig108548.697.1|Name=mRNA_H-elongata_contig108548.697.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3594bp|location=Sequence derived from alignment at H-elongata_contig108548:123..2174- (Himanthalia elongata Himel1 dioecious)
CAGAACAACGTACCCCTCGAGCGCTTGCGCCTCGCAGAAGACGAGTTCCT
TGCGCCACCCCTTCCGACCGCCGTAACGGCAACCGCCATAGCCACGGACG
CCACAACAAATACCACCCTCTCCAAGACATCTTCCACGATCGCTACCACG
GCAATGACTACGGGGACACCGCTCAAAGTAGAGGCAGCTGTGGCGGCGGC
GGGATCGAGCGTTGCCTCTCTGTCCGTGCACTCGCCGTCCGCGGGATCCT
CCTCCTCCGCGTGCGTCTTGACAGCCGCGCCCCCTGCGCCCTCGATTAGC
TCCACTTTTTCTTCCTCATTAACCACAAGGTCGGGTTCGTCCGCGGCTCG
CTCGACCTCGGCTTACGGCGTCGGAGGCAGAGGTGCAGGCGAAGGTAGTA
AGGGCATCTCGTCGTCGTCATCGCTGCATGGCGCAGTTCGCCGTGCCACG
ATCACCACGGTATCGGCTGCGGCGGGGTCAAACGCGGTAGCGGCAGCGGC
AGCAGCAAGGATGTCGACCGGACGAGGAGTTACAGACGGCCGCGGCGGCC
CTGTGAGCGTTAAAAAGCAAGACAGGCCCAGACTCTCCACCGGTAAGTAC
GGGAGAGCGCCGGCGAGCGTCTCGGCAGGTGGAGACGCGTCCGCTGGTTA
CCCCGGCGCGACCGCCGCCGCACCACGTAAGGCGGTCCTCAGCGGAGGAC
AGCTATCGCATGCGCGCTCGGCGTCCGATTTTTCCGTTAGGCGAGGTATA
ATCGCCACCGCAAACACTAGTGCAACGCGCCGCGTGTGGGTGAGAGATCG
CGTGGATTCCATGAAGTGGAGGCCGGGCTGCCTGGTGGCTGACGGAGAAA
GGACACTTGCGGCAACGGCGGCGATGGCTTCGGGAGGTGGAGGAAGCGGG
ACAGACGGTGCATCAGGCCTCGCGGCGCGCCTCGACGACGGCACCATCCA
GCAGAACAACGTACCCCTCGAGCGCTTGCGCCTCGCAGAAGACGAGTTCC
TTGCGCCACCCCTTCCGACCGCCGTAACGGCAACCGCCATAGCCACGGAC
GCCACAACAAATACCACCCTCTCCAAGACATCTTCCACGATCGCTACCAC
GGCAATGACTACGGGGACACCGCTCAAAGTAGAGGCAGCTGTGGCGGCGG
CGGGATCGAGCGTTGCCTCTCTGTCCGTGCACTCGCCGTCCGCGGGATCC
TCCTCCTCCGCGTGCGTCTTGACAGCCGCGCCCCCTGCGCCCTCGATTAG
CTCCACTTTTTCTTCCTCATTAACCACAAGGTCGGGTTCGTCCGCGGCTC
GCTCGACCTCGGCTTACGGCGTCGGAGGCAGAGGTGCAGGCGAAGGTAGT
AAGGGCATCTCGTCGTCGTCATCGCTGCATGGCGCAGTTCGCCGTGCCAC
GATCACCACGGTATCGGCTGCGGCGGGGTCAAACGCGGTAGCGGCAGCGG
CAGCAGCAAGGATGTCGACCGGACGAGGAGTTACAGACGGCCGCGGCGGC
CCTGTGAGCGTTAAAAAGCAAGACAGGCCCAGACTCTCCACCGGTAAGTA
CGGGAGAGCGCCGGCGAGCGTCTCGGCAGGTGGAGACGCGTCCGCTGGTT
ACCCCGGCGCGACCGCCGCCGCACCACGTAAGGCGGTCCTCAGCGGAGGA
CAGCTATCGCATGCGCGCTCGGCGTCCGATTTTTCCGTTAGGCGAGGTAT
AATCGCCACCGCAAACACTAGTGCAACGCGCCGCGTGTGGGTGAGAGATC
GCGTGGATTCCATGAAGTGGAGGCCGGGCTGCCTGGTGGCTGACGGAGAA
AGGACACTTGCGGCAACGGCGGCGATGGCTTCGGGAGGTGGAGGAAGCGG
GACAGACGGTGCATCAGGCCTCGCGGCGCGCCTCGACGACGGCACCATCC
AGACCCTCCGACCGGATGGACTTATGGACTTTCCGACTGTGGGGGGCTCC
GCTGCGGCGATGGCGGAAGCAGCGGCTGCCGCGGGTGGCTCGGGTGCCGG
GCGAGGCGTGCGCACCCCCGCCGCGAAGCTCGCCTCACTCACGGGTGCAC
TTCGACGCCACGGCCGCAACGCCGGGCTCGGTTGGACCGGCAGAGACGGT
GGCGGTGGTGGTGAAGACGACGCTGCCGCGGCGACCTTCTGCAAGGAGCC
CGCAACCCCTCACTCCTGGCTATGTAGCCGTCAGCCGCGCACCCCGCTGG
GATTCCTGCCCAGGCTTGGCAGAAACAGCAGCGGCGGGGGAAGCGACGGT
GGTGGCCAGGGAGGAGGGGGAGGATCAGGTTCGGGAGGTGGAGCAAGCAA
CCGCGGCAAAGGGGGAAAGAGTGGCAAAGAGAGCGTTGAACCCCCCAGCC
TTCGGCGGCATTTTACTACCGTATCCGGGGGGTCCGACGTCTCGGCGGCG
GGGGGAGGGAAGGACAGGCGTGGCGGTGGCGCCGGAAGTGGAGGTGGAGG
AAAGGCGCACAATGAATCCAGCGCGGCGTCAACAAATGCACGGGGTGGTT
CTTCCGGGGGACGCGGCGGCGGAGCGGGTAGAGCGGACGACTCCAGGATC
GTTCGAGGAGGAAAGAAGATATCAATTTTCTCTGGTTTCGGCGGGGCTTC
TTCTAACAACAGCAAAGGCGGGGGGGGGCGGTCGAGGCAGCGGGGCAGCG
CCTCCTTGGCAGGATCAGGGGCGGCCAGTAGGGCGGAAGATGAAGAAGAA
TCTGTCCGGGCGGTGCCGCTCCAGCTGGAAGACGAGGGTTTGTTGCAGAC
CCTCCGACCGGATGGACTTATGGACTTTCCGACTGTGGGGGGCTCCGCTG
CGGCGATGGCGGAAGCAGCGGCTGCCGCGGGTGGCTCGGGTGCCGGGCGA
GGCGTGCGCACCCCCGCCGCGAAGCTCGCCTCACTCACGGGTGCACTTCG
ACGCCACGGCCGCAACGCCGGGCTCGGTTGGACCGGCAGAGACGGTGGCG
GTGGTGGTGAAGACGACGCTGCCGCGGCGACCTTCTGCAAGGAGCCCGCA
ACCCCTCACTCCTGGCTATGTAGCCGTCAGCCGCGCACCCCGCTGGGATT
CCTGCCCAGGCTTGGCAGAAACAGCAGCGGCGGGGGAAGCGACGGTGGTG
GCCAGGGAGGAGGGGGAGGATCAGGTTCGGGAGGTGGAGCAAGCAACCGC
GGCAAAGGGGGAAAGAGTGGCAAAGAGAGCGTTGAACCCCCCAGCCTTCG
GCGGCATTTTACTACCGTATCCGGGGGGTCCGACGTCTCGGCGGCGGGGG
GAGGGAAGGACAGGCGTGGCGGTGGCGCCGGAAGTGGAGGTGGAGGAAAG
GCGCACAATGAATCCAGCGCGGCGTCAACAAATGCACGGGGTGGTTCTTC
CGGGGGACGCGGCGGCGGAGCGGGTAGAGCGGACGACTCCAGGATCGTTC
GAGGAGGAAAGAAGATATCAATTTTCTCTGGTTTCGGCGGGGCTTCTTCT
AACAACAGCAAAGGCGGGGGGGGGCGGTCGAGGCAGCGGGGCAGCGCCTC
CTTGGCAGGATCAGGGGCGGCCAGTAGGGCGGAAGATGAAGAAGAATCTG
TCCGGGCGGTGCCGCTCCAGCTGGAAGACGAGGGTTTGTTGCAG
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