mRNA_H-elongata_contig108512.693.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108512.693.1
Unique NamemRNA_H-elongata_contig108512.693.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig108512.693.1 vs. uniprot
Match: D7FXU1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU1_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.490e-23
Identity = 43/53 (81.13%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 GGLNEGALIQEFLDGAEYVVDTVSRDGVHWVCAIWAYDKRSINGANFVYFGME 159
            GG+NEGAL+QE+LDG EYVVD+VSRDGVH +CAIW YDKRS+NGANFVYFGM+
Sbjct:  340 GGVNEGALVQEYLDGTEYVVDSVSRDGVHRICAIWEYDKRSVNGANFVYFGMK 392
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BLAST of mRNA_H-elongata_contig108512.693.1 vs. uniprot
Match: A0A6H5LB88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB88_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.490e-23
Identity = 43/53 (81.13%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 GGLNEGALIQEFLDGAEYVVDTVSRDGVHWVCAIWAYDKRSINGANFVYFGME 159
            GG+NEGAL+QE+LDG EYVVD+VSRDGVH +CAIW YDKRS+NGANFVYFGM+
Sbjct:  125 GGVNEGALVQEYLDGTEYVVDSVSRDGVHRICAIWEYDKRSVNGANFVYFGMK 177
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BLAST of mRNA_H-elongata_contig108512.693.1 vs. uniprot
Match: A0A835Z961_9STRA (ATP-grasp domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z961_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.590e-21
Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 GGLNEGALIQEFLDGAEYVVDTVSRDGVHWVCAIWAYDKRSINGANFVYFGME 159
            G +NEGAL+QE+LDG EYVVDTVSRDGVH V AIW YDKRS+NGANFVYFGM+
Sbjct:  753 GCVNEGALVQEYLDGIEYVVDTVSRDGVHKVVAIWEYDKRSVNGANFVYFGMK 805
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BLAST of mRNA_H-elongata_contig108512.693.1 vs. uniprot
Match: A0A7S3JRM9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRM9_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.700e-19
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 GGLNEGALIQEFLDGAEYVVDTVSRDGVHWVCAIWAYDKRSINGANFVYFGME 159
            G LNEGALIQEFL G E+VVD VSRDG+H + A+W YDKRS+NG NFVYFGM+
Sbjct:  562 GYLNEGALIQEFLQGDEFVVDAVSRDGIHKITAVWMYDKRSVNGTNFVYFGMQ 614
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BLAST of mRNA_H-elongata_contig108512.693.1 vs. uniprot
Match: A0A7R9YE89_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE89_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.050e-18
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 GGLNEGALIQEFLDGAEYVVDTVSRDGVHWVCAIWAYDKRSINGANFVYFGME 159
            G LN+GAL+QEFL G E+V+D VSRDGV+ V AIW YDKRS+NGANFVYFGM 
Sbjct:  322 GQLNDGALVQEFLAGREFVIDGVSRDGVYKVMAIWEYDKRSVNGANFVYFGMR 374
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BLAST of mRNA_H-elongata_contig108512.693.1 vs. uniprot
Match: A0A7S0XE07_9STRA (Hypothetical protein n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XE07_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.060e-18
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 GGLNEGALIQEFLDGAEYVVDTVSRDGVHWVCAIWAYDKRSINGANFVYFGME 159
            G +N+GAL QEFL G EYVVD VSRDG++ V AIW YDKRS+NGANFVYFGM 
Sbjct:  722 GHVNDGALCQEFLSGVEYVVDGVSRDGIYKVIAIWQYDKRSVNGANFVYFGMR 774
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BLAST of mRNA_H-elongata_contig108512.693.1 vs. uniprot
Match: A0A7S1XUT4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUT4_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.650e-17
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 GGLNEGALIQEFLDGAEYVVDTVSRDGVHWVCAIWAYDKRSINGANFVYFGME 159
            GG+N+GAL+QEFL G E+VVD VSRDG + V  IW YDKRS+N ANFVYFGM 
Sbjct:  329 GGVNDGALVQEFLTGEEFVVDGVSRDGEYKVVTIWEYDKRSVNDANFVYFGMR 381
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BLAST of mRNA_H-elongata_contig108512.693.1 vs. uniprot
Match: A0A7S3HD13_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HD13_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 6.350e-17
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 GGLNEGALIQEFLDGAEYVVDTVSRDGVHWVCAIWAYDKRSINGANFVYFGM 156
            G +N+G L QE+L G EYVVD VSRDG++ + AIW YDKR +NGANFVYFGM
Sbjct:  727 GAINDGVLCQEYLSGTEYVVDGVSRDGIYKIVAIWEYDKRPVNGANFVYFGM 778
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BLAST of mRNA_H-elongata_contig108512.693.1 vs. uniprot
Match: A0A482T3N5_9ARCH (LAL_C2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T3N5_9ARCH)

HSP 1 Score: 79.7 bits (195), Expect = 7.260e-17
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:   16 GALIQEFLDGAEYVVDTVSRDGVHWVCAIWAYDKRSINGANFVYFGME 159
            GAL QEFL G EYVVD VSRDG + V AIW YDKRS+NGANFVYFGM+
Sbjct:    3 GALCQEFLSGTEYVVDGVSRDGHYKVVAIWEYDKRSVNGANFVYFGMK 50
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BLAST of mRNA_H-elongata_contig108512.693.1 vs. uniprot
Match: A0A812T6K5_SYMMI (DdaF protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812T6K5_SYMMI)

HSP 1 Score: 81.6 bits (200), Expect = 8.650e-17
Identity = 39/53 (73.58%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 GGLNEGALIQEFLDGAEYVVDTVSRDGVHWVCAIWAYDKRSINGANFVYFGME 159
            G LN+GAL QEFL G E+VVD VSRDGV+ V AIW YDKR  NGANFVYFGM 
Sbjct:  369 GQLNDGALCQEFLQGNEFVVDGVSRDGVYKVTAIWEYDKRFANGANFVYFGMR 421
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108512.693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXU1_ECTSI1.490e-2381.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LB88_9PHAE1.490e-2381.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z961_9STRA1.590e-2181.13ATP-grasp domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3JRM9_9STRA1.700e-1973.58Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7R9YE89_9STRA2.050e-1873.58Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S0XE07_9STRA2.060e-1873.58Hypothetical protein n=2 Tax=Chromulina nebulosa T... [more]
A0A7S1XUT4_9STRA4.650e-1769.81Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3HD13_9STRA6.350e-1767.31Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482T3N5_9ARCH7.260e-1777.08LAL_C2 domain-containing protein n=1 Tax=archaeon ... [more]
A0A812T6K5_SYMMI8.650e-1773.58DdaF protein n=1 Tax=Symbiodinium microadriaticum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108512contigH-elongata_contig108512:1148..1306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue2.4e-19
Seed eggNOG ortholog2880.D7FXU1
EggNOG free text desc.ATP-grasp domain
EggNOG OGs2QUGS@2759,COG0439@1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.569197-CDS-H-elongata_contig108512:1147..13061622929613.569197-CDS-H-elongata_contig108512:1147..1306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108512 1148..1306 -
1691679091.5163867-CDS-H-elongata_contig108512:1147..13061691679091.5163867-CDS-H-elongata_contig108512:1147..1306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108512 1148..1306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108512.693.1prot_H-elongata_contig108512.693.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108512 1148..1306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108512.693.1

>prot_H-elongata_contig108512.693.1 ID=prot_H-elongata_contig108512.693.1|Name=mRNA_H-elongata_contig108512.693.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
GGLNEGALIQEFLDGAEYVVDTVSRDGVHWVCAIWAYDKRSINGANFVYF
GME
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mRNA from alignment at H-elongata_contig108512:1148..1306-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108512.693.1 ID=mRNA_H-elongata_contig108512.693.1|Name=mRNA_H-elongata_contig108512.693.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig108512:1148..1306- (Himanthalia elongata Himel1 dioecious)
GGTGGGCTAAATGAGGGGGCGCTTATCCAAGAGTTTTTGGACGGTGCAGA
GTACGTGGTCGACACCGTAAGCAGAGACGGTGTGCATTGGGTCTGTGCGA
TCTGGGCATACGATAAGCGGTCCATCAACGGGGCAAACTTTGTCTACTTC
GGGATGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig108512:1148..1306-

>mRNA_H-elongata_contig108512.693.1 ID=mRNA_H-elongata_contig108512.693.1|Name=mRNA_H-elongata_contig108512.693.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig108512:1148..1306- (Himanthalia elongata Himel1 dioecious)
GGTGGGCTAAATGAGGGGGCGCTTATCCAAGAGTTTTTGGACGGTGCAGA
GTACGTGGTCGACACCGTAAGCAGAGACGGTGTGCATTGGGTCTGTGCGA
TCTGGGCATACGATAAGCGGTCCATCAACGGGGCAAACTTTGTCTACTTC
GGGATGGAGGGTGGGCTAAATGAGGGGGCGCTTATCCAAGAGTTTTTGGA
CGGTGCAGAGTACGTGGTCGACACCGTAAGCAGAGACGGTGTGCATTGGG
TCTGTGCGATCTGGGCATACGATAAGCGGTCCATCAACGGGGCAAACTTT
GTCTACTTCGGGATGGAG
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