mRNA_H-elongata_contig10848.689.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE) HSP 1 Score: 210 bits (534), Expect = 2.290e-60 Identity = 127/388 (32.73%), Postives = 212/388 (54.64%), Query Frame = 1
Query: 103 IELPEGYRDSKKQVDLLKEAMYGLVNAGLFWSKRFRTELKAKGFERFQADPCVLRRVLREKVVXXXXXXXXXLLVASATKRDEEQVLKDLHSCFPIKDLGEVSFYLGYYISRDRDAGKLRLNHHQYLQTLAEHFEITKTSAIPPAARGKPLSKADGPQTSADA*ETRWITYREALGTLIWVATMTRPYISFALNQLAKFNDNPGPIRCKAARKAIQYMSRTKSLGVTCRSTPGESEKLSAWVDADHGTFPDTH*LVSGGEVMMGNGTISWLSRVQKVTATASLE**NVALVETVNELRFLQQVKEF-RMSPIDIRIKILEDNEGAIKMSKNRVRSPRTRHMDVKYHIINDAIDEGIIQIKYVPFEEHHVNIITKALDVKTFEKHLRFL 1263
++LP G ++ L +++YGL A KR ++L GFE+ +DPCVLR ++ ++V+ +L A TKR E +++ L P K+LGEV F+LG ISRDR+AG + ++ Y++ + E F I +TS+IP S A+ ++ + E + +RE +G L+W+A TRP S A+ +A+ + P KAA+K + Y+ T L + + +VDAD + VSG V++ +SW S QK + ++ E +A+ + V E F+ + +F R S +I + EDNEGAI +++N + S R++H+DV++H + + +EG+I++ +VP +E H +I+TKAL FE H F+
Sbjct: 1 MKLPPGCDSMSGKIVRLNKSLYGLKQASRTSYKRLVSDLLWIGFEQSLSDPCVLRFMMGDEVMGIFAIHVDDILYAG-TKRLAEVIVEALGDSLPTKNLGEVRFFLGCEISRDREAGTIEISQESYIRNVLERFNICRTSSIP-------ASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVVGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEAFFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFEFHRDFV 380
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 221 bits (564), Expect = 3.900e-60 Identity = 142/422 (33.65%), Postives = 225/422 (53.32%), Query Frame = 1
Query: 1 IRMVLGIIAILGWEVRQLNVDMVYLEANVEEEIYIELPEGYRDSKKQVDLLKEAMYGLVNAGLFWSKRFRTELKAKGFERFQADPCVLRRVLREKVVXXXXXXXXXLLVASATKRDEEQVLKDLHSCFPIKDLGEVSFYLGYYISRDRDAGKLRLNHHQYLQTLAEHFEITKTSAIPPAARGKPLSKADGPQTSADA*ETRWITYREALGTLIWVATMTRPYISFALNQLAKFNDNPGPIRCKAARKAIQYMSRTKSLGVTCRSTPGESEKLSAWVDADHGTFPDTH*LVSGGEVMMGNGTISWLSRVQKVTATASLE**NVALVETVNELRFLQQVKEFRMSPID-IRIKILEDNEGAIKMSKNRVRSPRTRHMDVKYHIINDAIDEGIIQIKYVPFEEHHVNIITKALDVKTFEKHLRFL 1263
I+++L + G + +V Y A ++EE++++LP G D ++ + A+YGL +G W L GFE+ +ADPCV R+++ E VV +LVA + + D E++L L+ FP K+LGE ++ G I RD +AG LR++ Y+ ++ E F++ TS IP A G L GP+ D W REA+G+++WV+T +RP +SFA+ +A+ P A +K + Y+ T+ LG+T + G L+ +VDA + D VSG +G +S S+ Q + + +S E +A E V E F++ V F IK+LEDN+GAI + +N + S RT+H+DV+YH I G I +K+VP E H +++TKAL + + H R L
Sbjct: 831 IKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIP-ATPGADL----GPKRE-DEEGGEW-PVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKL 1241
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 221 bits (564), Expect = 4.530e-60 Identity = 142/422 (33.65%), Postives = 225/422 (53.32%), Query Frame = 1
Query: 1 IRMVLGIIAILGWEVRQLNVDMVYLEANVEEEIYIELPEGYRDSKKQVDLLKEAMYGLVNAGLFWSKRFRTELKAKGFERFQADPCVLRRVLREKVVXXXXXXXXXLLVASATKRDEEQVLKDLHSCFPIKDLGEVSFYLGYYISRDRDAGKLRLNHHQYLQTLAEHFEITKTSAIPPAARGKPLSKADGPQTSADA*ETRWITYREALGTLIWVATMTRPYISFALNQLAKFNDNPGPIRCKAARKAIQYMSRTKSLGVTCRSTPGESEKLSAWVDADHGTFPDTH*LVSGGEVMMGNGTISWLSRVQKVTATASLE**NVALVETVNELRFLQQVKEFRMSPID-IRIKILEDNEGAIKMSKNRVRSPRTRHMDVKYHIINDAIDEGIIQIKYVPFEEHHVNIITKALDVKTFEKHLRFL 1263
I+++L + G + +V Y A ++EE++++LP G D ++ + A+YGL +G W L GFE+ +ADPCV R+++ E VV +LVA + + D E++L L+ FP K+LGE ++ G I RD +AG LR++ Y+ ++ E F++ TS IP A G L GP+ D W REA+G+++WV+T +RP +SFA+ +A+ P A +K + Y+ T+ LG+T + G L+ +VDA + D VSG +G +S S+ Q + + +S E +A E V E F++ V F IK+LEDN+GAI + +N + S RT+H+DV+YH I G I +K+VP E H +++TKAL + + H R L
Sbjct: 1210 IKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIP-ATPGADL----GPKRE-DEEGGEW-PVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKL 1620
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 221 bits (564), Expect = 4.640e-60 Identity = 142/422 (33.65%), Postives = 225/422 (53.32%), Query Frame = 1
Query: 1 IRMVLGIIAILGWEVRQLNVDMVYLEANVEEEIYIELPEGYRDSKKQVDLLKEAMYGLVNAGLFWSKRFRTELKAKGFERFQADPCVLRRVLREKVVXXXXXXXXXLLVASATKRDEEQVLKDLHSCFPIKDLGEVSFYLGYYISRDRDAGKLRLNHHQYLQTLAEHFEITKTSAIPPAARGKPLSKADGPQTSADA*ETRWITYREALGTLIWVATMTRPYISFALNQLAKFNDNPGPIRCKAARKAIQYMSRTKSLGVTCRSTPGESEKLSAWVDADHGTFPDTH*LVSGGEVMMGNGTISWLSRVQKVTATASLE**NVALVETVNELRFLQQVKEFRMSPID-IRIKILEDNEGAIKMSKNRVRSPRTRHMDVKYHIINDAIDEGIIQIKYVPFEEHHVNIITKALDVKTFEKHLRFL 1263
I+++L + G + +V Y A ++EE++++LP G D ++ + A+YGL +G W L GFE+ +ADPCV R+++ E VV +LVA + + D E++L L+ FP K+LGE ++ G I RD +AG LR++ Y+ ++ E F++ TS IP A G L GP+ D W REA+G+++WV+T +RP +SFA+ +A+ P A +K + Y+ T+ LG+T + G L+ +VDA + D VSG +G +S S+ Q + + +S E +A E V E F++ V F IK+LEDN+GAI + +N + S RT+H+DV+YH I G I +K+VP E H +++TKAL + + H R L
Sbjct: 1373 IKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIP-ATPGADL----GPKRE-DEEGGEW-PVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKL 1783
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 218 bits (554), Expect = 9.720e-59 Identity = 138/410 (33.66%), Postives = 220/410 (53.66%), Query Frame = 1
Query: 1 IRMVLGIIAILGWEVRQLNVDMVYLEANVEEEIYIELPEGYRDSKKQVDLLKEAMYGLVNAGLFWSKRFRTELKAKGFERFQADPCVLRRVLREKVVXXXXXXXXXLLVASATKRDEEQVLKDLHSCFPIKDLGEVSFYLGYYISRDRDAGKLRLNHHQYLQTLAEHFEITKTSAIPPAARGKPLSKADGPQTSADA*ETRWITYREALGTLIWVATMTRPYISFALNQLAKFNDNPGPIRCKAARKAIQYMSRTKSLGVTCRSTPGESEKLSAWVDADHGTFPDTH*LVSGGEVMMGNGTISWLSRVQKVTATASLE**NVALVETVNELRFLQQVKEFRMSPID-IRIKILEDNEGAIKMSKNRVRSPRTRHMDVKYHIINDAIDEGIIQIKYVPFEEHHVNIITKAL 1227
I+++L + G + +V Y A ++EE++++LP G D ++ + A+YGL +G W L GFE+ +ADPCV R+++ + VV +LVA + + D E++L L+ FP K+LGE ++ G I RD +AG LR++ Y+ ++ E F++ TS IP A G L GP+ D W REA+G+++WV+T +RP +SFA+ +A+ P A +K + Y+ T+ LG+T + G L+ +VDA + D VSG +G +S S+ Q + + +S E +A E V E F++ V F IK+LEDN+GAI + +N + S RT+H+DV+YH I G I +K+VP E H +++TKAL
Sbjct: 1230 IKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIP-ATPGADL----GPKRE-DEEGGEW-PVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 207 bits (527), Expect = 1.130e-57 Identity = 137/410 (33.41%), Postives = 223/410 (54.39%), Query Frame = 1
Query: 37 WEVRQLNVDMVYLEANVEEEIYIELPEGYRDSKKQVDLLKEAMYGLVNAGLFWSKRFRTELKAKGFERFQADPCVLRRVLREKVVXXXXXXXXXLLVASATKRDEEQVLKDLHSCFPIKDLGEVSFYLGYYISRDRDAGKLRLNHHQYLQTLAEHFEITKTSAIPPAARGKPLSKADGPQTSADA*ETRWITYREALGTLIWVATMTRPYISFALNQLAKFNDNPGPIRCKAARKAIQYMSRTKSLGVTCRSTPGESEKLSAWVDADHGTFPDTH*LVSGGEVMMGNGTISWLSRVQKVTATASLE**NVALVETVNELRFLQQVKEFRMSPID-IRIKILEDNEGAIKMSKNRVRSPRTRHMDVKYHIINDAIDEGIIQIKYVPFEEHHVNIITKALDVKTFEKHLRFL 1263
W+V+Q + A ++E++++ LP G + +V + A+YGL +G W L GFE+ +ADPCV R+ +++ VVXXXXXXXX ++ + + D +++L L+ FP KDLGE ++ G + RD +AG LR++ Y+ ++ F++ TS+IP A+ G + ++ + W REA+G+++WV+T +RP ISFA+ +A+ P KA K + Y+ T+ LG+T G L+ +VDA + D VSG +G IS S+ Q + + +S E +A E V E F++ V F I++LEDN+GA+ + +N + S R++H+DV+YH I G I IK+V E H +++TKAL + + H R L
Sbjct: 111 WDVKQ-----AFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRK-MKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIP-ASPGVDIGPKRDDESGGE-----W-PVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYER--GSGLGLAVYVDASYADAEDRR-SVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKL 504
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 203 bits (516), Expect = 3.730e-57 Identity = 124/407 (30.47%), Postives = 210/407 (51.60%), Query Frame = 1
Query: 46 RQLNVDMVYLEANVEEEIYIELPEGYRDSKKQVDLLKEAMYGLVNAGLFWSKRFRTELKAKGFERFQADPCVLRRVLREKVVXXXXXXXXXLLVASATKRDEEQVLKDLHSCFPIKDLGEVSFYLGYYISRDRDAGKLRLNHHQYLQTLAEHFEITKTSAIPPAARGKPLSKADGPQTSADA*ETRWITYREALGTLIWVATMTRPYISFALNQLAKFNDNPGPIRCKAARKAIQYMSRTKSLGVTCRSTPGESEKLSAWVDADHGTFPDTH*LVSGGEVMMGNGTISWLSRVQKVTATASLE**NVALVETVNELRFLQQVKEFRMSPIDIR-IKILEDNEGAIKMSKNRVRSPRTRHMDVKYHIINDAIDEGIIQIKYVPFEEHHVNIITKALDVKTFEKHLRFL 1263
R ++ +++++++E++++ LPEG + L +++YGL A W L GF + AD CV R + +VV + +R + Q +DL++ P+K+LG++ +Y G + RD DAG L+++ Y + L F + IP G LS+ D D W +RE +G+L+W+AT TRP I+ A+ +A++ +P I +A + Y+ RT LG+T R + +VDAD+ + VSGG VM G G ISW SR QK ++ E V+L + + E+ FL+QV F + + I + EDN+GAI++++N + + ++H+DV++H I + + I I +V H + +TKAL FE H ++
Sbjct: 36 RHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD-QFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPV-GLKLSEFD-----QDEEVVSW-PFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYV 434
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE) HSP 1 Score: 207 bits (527), Expect = 6.840e-56 Identity = 138/424 (32.55%), Postives = 226/424 (53.30%), Query Frame = 1
Query: 1 IRMVLGIIAILGWEVRQLNVDMVYLEANVEEEIYIELPEGYRDSKKQVDLLKEAMYGLVNAGLFWSKRFRTELKAKGFERFQADPCVLRRVLREKVVXXXXXXXXXLLVASATKRDEEQVLKDLHSCFPIKDLGEVSFYLGYYISRDRDAGKLRLNHHQYLQTLAEHFEITKTSAIPPAARGKPLSKADGPQTSADA*ETRWITYREALGTLIWVATMTRPYISFALNQLAKFNDNPGPIRCKAARKAIQYMSRTKSLGVTCRSTPGESEKLSAWVDADHGTFPDTH*LVSGGEVMMGNGTISWLSRVQKVTATASLE**NVALVETVNELRFLQQVKEFRMSPIDIR---IKILEDNEGAIKMSKNRVRSPRTRHMDVKYHIINDAIDEGIIQIKYVPFEEHHVNIITKALDVKTFEKHLRFL 1263
I+++L + G + +V Y A ++EE++++LP G D ++ + A+YGL +G W L GFE+ +ADPCV R+++ E VV +LVA + + D E++L L+ FP K+LGE ++ G I RD DAG LR++ Y+ ++ E F++ TS IP A G L GP+ D W REA+G+++WV+T +RP +SFA+ +A+ P A +K + Y+ T+ LG+T + G L+ +VDA + D VS +G +S S+ + + + +S E +A E V E F++ V F ++P + R I++LEDN+GAI + +N + S +H+DV++H I G +K+VP E H +I+T+AL + + H R L
Sbjct: 422 IKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIP-ATPGADL----GPKREDDK-GGEW-PVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDARYADTEDRR-SVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSF-VAP-ETRGSSIQVLEDNQGAIALVQNPLSSGGMKHIDVRFHFIRGLFRSGDTSVKFVPTTEQHADILTQALSRASLQYHRRKL 832
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 203 bits (516), Expect = 1.320e-55 Identity = 124/407 (30.47%), Postives = 210/407 (51.60%), Query Frame = 1
Query: 46 RQLNVDMVYLEANVEEEIYIELPEGYRDSKKQVDLLKEAMYGLVNAGLFWSKRFRTELKAKGFERFQADPCVLRRVLREKVVXXXXXXXXXLLVASATKRDEEQVLKDLHSCFPIKDLGEVSFYLGYYISRDRDAGKLRLNHHQYLQTLAEHFEITKTSAIPPAARGKPLSKADGPQTSADA*ETRWITYREALGTLIWVATMTRPYISFALNQLAKFNDNPGPIRCKAARKAIQYMSRTKSLGVTCRSTPGESEKLSAWVDADHGTFPDTH*LVSGGEVMMGNGTISWLSRVQKVTATASLE**NVALVETVNELRFLQQVKEFRMSPIDIR-IKILEDNEGAIKMSKNRVRSPRTRHMDVKYHIINDAIDEGIIQIKYVPFEEHHVNIITKALDVKTFEKHLRFL 1263
R ++ +++++++E++++ LPEG + L +++YGL A W L GF + AD CV R + +VV + +R + Q +DL++ P+K+LG++ +Y G + RD DAG L+++ Y + L F + IP G LS+ D D W +RE +G+L+W+AT TRP I+ A+ +A++ +P I +A + Y+ RT LG+T R + +VDAD+ + VSGG VM G G ISW SR QK ++ E V+L + + E+ FL+QV F + + I + EDN+GAI++++N + + ++H+DV++H I + + I I +V H + +TKAL FE H ++
Sbjct: 210 RHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD-QFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPV-GLKLSEFD-----QDEEVVSW-PFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYV 608
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE) HSP 1 Score: 199 bits (506), Expect = 1.900e-55 Identity = 115/404 (28.47%), Postives = 209/404 (51.73%), Query Frame = 1
Query: 55 NVDMVYLEANVEEEIYIELPEGYRDSKKQVDLLKEAMYGLVNAGLFWSKRFRTELKAKGFERFQADPCVLRRVLREKVVXXXXXXXXXLLVASATKRDEEQVLKDLHSCFPIKDLGEVSFYLGYYISRDRDAGKLRLNHHQYLQTLAEHFEITKTSAIPPAARGKPLSKADGPQTSADA*ETRWITYREALGTLIWVATMTRPYISFALNQLAKFNDNPGPIRCKAARKAIQYMSRTKSLGVTCRSTPGESEKLSAWVDADHGTFPDTH*LVSGGEVMMGNGTISWLSRVQKVTATASLE**NVALVETVNELRFLQQVKEFRMSPIDIR-IKILEDNEGAIKMSKNRVRSPRTRHMDVKYHIINDAIDEGIIQIKYVPFEEHHVNIITKALDVKTFEKHLRFL 1263
+V+ ++ + +EE++Y+ LP+G + L +++YGL A W + L A GFE+ AD CV R + VV + +R ++ DL+ P+K+LGE+ +Y G + R+++ G+L ++ + LA + + ++P ++ G LS D + + + +RE +G+L+W+AT TRP I+ A+ +A++ +P + AA + Y RT G++ + E L + DAD + VSGG V G G +SW SR QK ++ E VAL + V E+ FL+Q+ F + + + I + EDN+GAI++++N + + ++H+DV++H + + ++ I + +VP + +TK+L FE H F+
Sbjct: 63 DVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDK-FGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSS-GVKLSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFV 458 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10848.689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10848.689.1 >prot_H-elongata_contig10848.689.1 ID=prot_H-elongata_contig10848.689.1|Name=mRNA_H-elongata_contig10848.689.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp MVLGIIAILGWEVRQLNVDMVYLEANVEEEIYIELPEGYRDSKKQVDLLKback to top mRNA from alignment at H-elongata_contig10848:5467..6729- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10848.689.1 ID=mRNA_H-elongata_contig10848.689.1|Name=mRNA_H-elongata_contig10848.689.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1263bp|location=Sequence derived from alignment at H-elongata_contig10848:5467..6729- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10848:5467..6729- >mRNA_H-elongata_contig10848.689.1 ID=mRNA_H-elongata_contig10848.689.1|Name=mRNA_H-elongata_contig10848.689.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig10848:5467..6729- (Himanthalia elongata Himel1 dioecious)back to top |