mRNA_H-elongata_contig108420.687.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108420.687.1
Unique NamemRNA_H-elongata_contig108420.687.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig108420.687.1 vs. uniprot
Match: A0A6H5LB76_9PHAE (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LB76_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.400e-7
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:    1 VYTIPCDYARGTFSYHPHDHGSTALQTGGG 90
            VYTIPCD+A GTF YHPH HGST+LQ GGG
Sbjct:  750 VYTIPCDHAGGTFWYHPHHHGSTSLQMGGG 779
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BLAST of mRNA_H-elongata_contig108420.687.1 vs. uniprot
Match: A0A836CK08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK08_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.710e-6
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:    1 VYTIPCDYARGTFSYHPHDHGSTALQTGGG 90
             YTIPCD+A GT  YHPH HGS ALQTGGG
Sbjct:  645 TYTIPCDHASGTNWYHPHHHGSVALQTGGG 674
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BLAST of mRNA_H-elongata_contig108420.687.1 vs. uniprot
Match: A0A835YUJ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUJ5_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.150e-6
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:    1 VYTIPCDYARGTFSYHPHDHGSTALQTGGG 90
             YTIPC++A GTF YHPH HGSTALQ  GG
Sbjct:  413 TYTIPCEHASGTFWYHPHGHGSTALQADGG 442
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BLAST of mRNA_H-elongata_contig108420.687.1 vs. uniprot
Match: A0A835ZAX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAX7_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 3.870e-5
Identity = 20/30 (66.67%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:    1 VYTIPCDYARGTFSYHPHDHGSTALQTGGG 90
             YT+PCD++ GT  YHPH+HGS+ALQT GG
Sbjct:  368 TYTLPCDHSSGTNWYHPHNHGSSALQTTGG 397
[Close]
BLAST of mRNA_H-elongata_contig108420.687.1 vs. uniprot
Match: A0A7S2J6U1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2J6U1_9EUKA)

HSP 1 Score: 49.3 bits (116), Expect = 7.140e-5
Identity = 20/30 (66.67%), Postives = 23/30 (76.67%), Query Frame = 1 
Query:    1 VYTIPCDYARGTFSYHPHDHGSTALQTGGG 90
             Y IP D+  GTF YHPH HGSTA+Q+GGG
Sbjct:  157 TYVIPADHMGGTFWYHPHHHGSTAIQSGGG 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108420.687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5LB76_9PHAE1.400e-780.00PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CK08_9STRA1.710e-676.67Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YUJ5_9STRA3.150e-673.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZAX7_9STRA3.870e-566.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2J6U1_9EUKA7.140e-566.67Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108420contigH-elongata_contig108420:1285..1879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size248
Cds size213
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108420.687.1prot_H-elongata_contig108420.687.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108420 1285..1846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.1569967-CDS-H-elongata_contig108420:1284..13721622929613.1569967-CDS-H-elongata_contig108420:1284..1372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108420 1285..1372 +
1691679091.3448253-CDS-H-elongata_contig108420:1284..13721691679091.3448253-CDS-H-elongata_contig108420:1284..1372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108420 1285..1372 +
1622929613.192002-CDS-H-elongata_contig108420:1721..18461622929613.192002-CDS-H-elongata_contig108420:1721..1846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108420 1722..1846 +
1691679091.3546524-CDS-H-elongata_contig108420:1721..18461691679091.3546524-CDS-H-elongata_contig108420:1721..1846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108420 1722..1846 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.206908-UTR-H-elongata_contig108420:1846..18791622929613.206908-UTR-H-elongata_contig108420:1846..1879Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108420 1847..1879 +
1691679091.3647757-UTR-H-elongata_contig108420:1846..18791691679091.3647757-UTR-H-elongata_contig108420:1846..1879Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108420 1847..1879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108420.687.1

>prot_H-elongata_contig108420.687.1 ID=prot_H-elongata_contig108420.687.1|Name=mRNA_H-elongata_contig108420.687.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
VYTIPCDYARGTFSYHPHDHGSTALQTGGGDVSGADQGRSTCDRRRAFQH
HLHLEVTSTCGDKVDGLDRP*
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mRNA from alignment at H-elongata_contig108420:1285..1879+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108420.687.1 ID=mRNA_H-elongata_contig108420.687.1|Name=mRNA_H-elongata_contig108420.687.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=595bp|location=Sequence derived from alignment at H-elongata_contig108420:1285..1879+ (Himanthalia elongata Himel1 dioecious)
GTGTACACCATTCCGTGTGATTACGCGAGAGGGACCTTCTCGTACCACCC
ACACGACCACGGCTCCACGGCCCTGCAGACTGGCGGAGGTGCCATGGGAG
TTCTAATCATAAAAGACAGGCCCGACGTTCACGGAATACCGGACCTGTAG
TCGGACATGCCAGAGCTAGTGGTGGCAATTCAAGCGAGCATTAACTCTGC
GGAGTCGGTTTTATACATATACTAAATAATATACTAGAAATGATATACTA
GTAACAGACTATCAAAGAGAAAACAGGCGTTGTGAGGGACCGCAGTTTTG
ATTGTGGTTTTGTTAAGCTTTTGCCTCCTCTGAAAAACTACGGAGACCTT
TAAAAAATATTCGTGAGAGCGCGTTGTATGCGTGTACCTTGGCATTTTAT
GTTGTGACGTCAATCTGCTGCCGGCGGGTCTCTTCAGGAGATGTATCCGG
AGCTGATCAAGGCAGATCGACATGCGACCGGAGGAGAGCTTTTCAACACC
ACCTCCACCTCGAGGTAACCTCGACTTGTGGTGACAAGGTTGATGGGCTC
GATAGACCCTGAGGATCGACTATTTTCCTTCTGGTTTTGGTTGAT
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Coding sequence (CDS) from alignment at H-elongata_contig108420:1285..1879+

>mRNA_H-elongata_contig108420.687.1 ID=mRNA_H-elongata_contig108420.687.1|Name=mRNA_H-elongata_contig108420.687.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig108420:1285..1879+ (Himanthalia elongata Himel1 dioecious)
GTGTACACCATTCCGTGTGATTACGCGAGAGGGACCTTCTCGTACCACCC
ACACGACCACGGCTCCACGGCCCTGCAGACTGGCGGAGGTGTACACCATT
CCGTGTGATTACGCGAGAGGGACCTTCTCGTACCACCCACACGACCACGG
CTCCACGGCCCTGCAGACTGGCGGAGGAGATGTATCCGGAGCTGATCAAG
GCAGATCGACATGCGACCGGAGGAGAGCTTTTCAACACCACCTCCACCTC
GAGGTAACCTCGACTTGTGGTGACAAGGTTGATGGGCTCGATAGACCCTG
AGAGATGTATCCGGAGCTGATCAAGGCAGATCGACATGCGACCGGAGGAG
AGCTTTTCAACACCACCTCCACCTCGAGGTAACCTCGACTTGTGGTGACA
AGGTTGATGGGCTCGATAGACCCTGA
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