mRNA_H-elongata_contig108373.682.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108373.682.1
Unique NamemRNA_H-elongata_contig108373.682.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig108373.682.1 vs. uniprot
Match: D7G7L6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L6_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 3.510e-11
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:   10 ADNRPLNAGGGTESSWVPPSEFPPGHDDFPTAKSMTTED-EKETVSKKHVDPVGESAGSGGTGR--TEYMQALGPLKIRDEADPFSVDKG 270
            +++RPL  GG  + +WVPPSEFPPG +D P ++    +   K+  ++  VD  G+   S G     +EYM ALG +K+R+EADPFS+D G
Sbjct: 1020 SEDRPLTGGG--KGAWVPPSEFPPGQEDGPVSRGDGGDALVKKASAESVVDAPGQGNDSAGDEAVSSEYMTALGFVKVREEADPFSMDLG 1107
[Close]
BLAST of mRNA_H-elongata_contig108373.682.1 vs. uniprot
Match: A0A6H5L4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T0_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 6.570e-11
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:   10 ADNRPLNAGGGTESSWVPPSEFPPGHDDFPTAKSMTTEDEKETVSKKH-----VDPVGESAGSGGTGR--TEYMQALGPLKIRDEADPFSVDKG 270
            +++RPL  GG  + +WVPPSEFPPG +D P        D  + + KK      VD  G+   S G     +EYM ALG +K+R+EADPFS+D G
Sbjct:  659 SEDRPLTGGG--KGAWVPPSEFPPGEEDGPVGSG----DGGDVLVKKASAGSVVDAAGQEKDSAGDEAVSSEYMTALGFVKVREEADPFSMDLG 746
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108373.682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7L6_ECTSI3.510e-1143.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4T0_9PHAE6.570e-1143.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108373contigH-elongata_contig108373:586..1155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929611.9645715-CDS-H-elongata_contig108373:585..8061622929611.9645715-CDS-H-elongata_contig108373:585..806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108373 586..806 +
1691679091.1241448-CDS-H-elongata_contig108373:585..8061691679091.1241448-CDS-H-elongata_contig108373:585..806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108373 586..806 +
1622929611.976489-CDS-H-elongata_contig108373:1097..11551622929611.976489-CDS-H-elongata_contig108373:1097..1155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108373 1098..1155 +
1691679091.1344316-CDS-H-elongata_contig108373:1097..11551691679091.1344316-CDS-H-elongata_contig108373:1097..1155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108373 1098..1155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108373.682.1prot_H-elongata_contig108373.682.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108373 586..1155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108373.682.1

>prot_H-elongata_contig108373.682.1 ID=prot_H-elongata_contig108373.682.1|Name=mRNA_H-elongata_contig108373.682.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
AENADNRPLNAGGGTESSWVPPSEFPPGHDDFPTAKSMTTEDEKETVSKK
HVDPVGESAGSGGTGRTEYMQALGPLKIRDEADPFSVDKGVTE
back to top

mRNA from alignment at H-elongata_contig108373:586..1155+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108373.682.1 ID=mRNA_H-elongata_contig108373.682.1|Name=mRNA_H-elongata_contig108373.682.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=570bp|location=Sequence derived from alignment at H-elongata_contig108373:586..1155+ (Himanthalia elongata Himel1 dioecious)
GCAGAAAACGCGGACAACCGACCCTTGAACGCGGGGGGCGGAACGGAATC
GTCATGGGTGCCGCCAAGCGAGTTCCCGCCTGGACACGATGATTTTCCAA
CAGCGAAGAGCATGACTACAGAGGACGAGAAGGAAACGGTGTCGAAGAAG
CATGTCGATCCTGTCGGGGAATCAGCTGGCTCCGGCGGAACTGGACGTAC
CGAGTACATGCAGGCACTTGGGTGCGTCGTTTTTTGCTGCTTGCAGTGGT
ATCGCTAGTAATGATGACAGCCTATGGCACGCCCTCGCTGTCACTCCACT
ATGGGTAAATGCATGCGACTCGCGCAACGGGGCCGTTAGAGGTTTCCATT
GACACGTGGCATGTTTTGTGTGTTAGTTTAATAAAGTACGGTGCTGGTTT
ATTTTATTTTTTGGTGAGTGATAGCTCGACATGTCTAGTGGTACCAACGT
GTTCATAAATTCAGTGCTGAACGCGACAGCTTGATAACACTTCACTTATC
TCCGACGGCCAGGCCCCTCAAGATTCGGGACGAGGCAGACCCTTTCTCGG
TGGACAAGGGTGTGACAGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig108373:586..1155+

>mRNA_H-elongata_contig108373.682.1 ID=mRNA_H-elongata_contig108373.682.1|Name=mRNA_H-elongata_contig108373.682.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig108373:586..1155+ (Himanthalia elongata Himel1 dioecious)
GCAGAAAACGCGGACAACCGACCCTTGAACGCGGGGGGCGGAACGGAATC
GTCATGGGTGCCGCCAAGCGAGTTCCCGCCTGGACACGATGATTTTCCAA
CAGCGAAGAGCATGACTACAGAGGACGAGAAGGAAACGGTGTCGAAGAAG
CATGTCGATCCTGTCGGGGAATCAGCTGGCTCCGGCGGAACTGGACGTAC
CGAGTACATGCAGGCACTTGGGCAGAAAACGCGGACAACCGACCCTTGAA
CGCGGGGGGCGGAACGGAATCGTCATGGGTGCCGCCAAGCGAGTTCCCGC
CTGGACACGATGATTTTCCAACAGCGAAGAGCATGACTACAGAGGACGAG
AAGGAAACGGTGTCGAAGAAGCATGTCGATCCTGTCGGGGAATCAGCTGG
CTCCGGCGGAACTGGACGTACCGAGTACATGCAGGCACTTGGGCCCCTCA
AGATTCGGGACGAGGCAGACCCTTTCTCGGTGGACAAGGGTGTGACAGAG
GCCCCTCAAGATTCGGGACGAGGCAGACCCTTTCTCGGTGGACAAGGGTG
TGACAGAG
back to top