mRNA_H-elongata_contig108333.681.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108333.681.1
Unique NamemRNA_H-elongata_contig108333.681.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig108333.681.1 vs. uniprot
Match: UPI00103F0D66 (uncharacterized protein LOC114362197 n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103F0D66)

HSP 1 Score: 49.7 bits (117), Expect = 3.670e-5
Identity = 29/93 (31.18%), Postives = 47/93 (50.54%), Query Frame = 1 
Query:    4 VQGAKSPGEAWSKLVQHYHASGLKERRRLTVDFYTMKMELGDNPRKRFLQVDQIVKELERVERPVAPKDVDIVILSGLTPQYDADVRMLESSS 282
            ++ AKS  EAW+ L + Y   GL  R  L    +  K+    +      ++ +I  +L  +E P+  + V ++ILSGLT  YD  +  +E SS
Sbjct:   71 IRTAKSAHEAWTILQKTYEGRGLSRRLGLLRSLFNTKLSECSSMEVYLNKIKEISHQLSEIESPLDDELVAVIILSGLTDDYDPLIMAIEHSS 163
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BLAST of mRNA_H-elongata_contig108333.681.1 vs. uniprot
Match: A0A2H1VB05_SPOFR (SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1VB05_SPOFR)

HSP 1 Score: 48.9 bits (115), Expect = 4.540e-5
Identity = 27/93 (29.03%), Postives = 47/93 (50.54%), Query Frame = 1 
Query:    4 VQGAKSPGEAWSKLVQHYHASGLKERRRLTVDFYTMKMELGDNPRKRFLQVDQIVKELERVERPVAPKDVDIVILSGLTPQYDADVRMLESSS 282
            ++ AKS  EAW  L + Y   GL  R  L    ++ K+    +      ++ +I  +L  +E P+  + V +++LSGLT  YD  +  +E S+
Sbjct:   43 IRTAKSAHEAWKILQKAYEGRGLSRRLGLLRSLFSTKLSENSSMEVYLNKIKEISHQLNEIESPLDDEFVAVIMLSGLTDDYDPLIMAIEHST 135
[Close]
BLAST of mRNA_H-elongata_contig108333.681.1 vs. uniprot
Match: UPI00103FEA55 (uncharacterized protein LOC114361313 n=2 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103FEA55)

HSP 1 Score: 49.7 bits (117), Expect = 7.730e-5
Identity = 29/93 (31.18%), Postives = 47/93 (50.54%), Query Frame = 1 
Query:    4 VQGAKSPGEAWSKLVQHYHASGLKERRRLTVDFYTMKMELGDNPRKRFLQVDQIVKELERVERPVAPKDVDIVILSGLTPQYDADVRMLESSS 282
            ++ AKS  EAW+ L + Y   GL  R  L    +  K+    +      ++ +I  +L  +E P+  + V ++ILSGLT  YD  +  +E SS
Sbjct:   71 IRTAKSAHEAWTILQKTYEGRGLSRRLGLLRSLFNTKLSECSSMEVYLNKIKEISHQLSEIESPLDDELVAVIILSGLTDDYDPLIMAIEHSS 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108333.681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI00103F0D663.670e-531.18uncharacterized protein LOC114362197 n=1 Tax=Ostri... [more]
A0A2H1VB05_SPOFR4.540e-529.03SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugip... [more]
UPI00103FEA557.730e-531.18uncharacterized protein LOC114361313 n=2 Tax=Ostri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108333contigH-elongata_contig108333:205..489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929611.924551-CDS-H-elongata_contig108333:204..4891622929611.924551-CDS-H-elongata_contig108333:204..489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108333 205..489 +
1691679091.1100562-CDS-H-elongata_contig108333:204..4891691679091.1100562-CDS-H-elongata_contig108333:204..489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108333 205..489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108333.681.1prot_H-elongata_contig108333.681.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108333 205..489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108333.681.1

>prot_H-elongata_contig108333.681.1 ID=prot_H-elongata_contig108333.681.1|Name=mRNA_H-elongata_contig108333.681.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
IVQGAKSPGEAWSKLVQHYHASGLKERRRLTVDFYTMKMELGDNPRKRFL
QVDQIVKELERVERPVAPKDVDIVILSGLTPQYDADVRMLESSSD
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mRNA from alignment at H-elongata_contig108333:205..489+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108333.681.1 ID=mRNA_H-elongata_contig108333.681.1|Name=mRNA_H-elongata_contig108333.681.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=285bp|location=Sequence derived from alignment at H-elongata_contig108333:205..489+ (Himanthalia elongata Himel1 dioecious)
ATCGTCCAAGGAGCTAAGTCGCCCGGGGAAGCGTGGTCAAAGCTCGTGCA
GCACTACCACGCCAGCGGCCTCAAGGAACGACGCCGCCTTACTGTGGACT
TCTATACAATGAAGATGGAACTTGGCGACAATCCGCGCAAACGTTTCCTG
CAAGTGGACCAGATAGTCAAGGAACTGGAAAGGGTGGAGCGACCGGTGGC
CCCGAAGGATGTGGACATCGTAATTCTGAGCGGCCTCACCCCCCAGTACG
ACGCCGACGTTCGAATGCTGGAGAGCTCATCGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig108333:205..489+

>mRNA_H-elongata_contig108333.681.1 ID=mRNA_H-elongata_contig108333.681.1|Name=mRNA_H-elongata_contig108333.681.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig108333:205..489+ (Himanthalia elongata Himel1 dioecious)
ATCGTCCAAGGAGCTAAGTCGCCCGGGGAAGCGTGGTCAAAGCTCGTGCA
GCACTACCACGCCAGCGGCCTCAAGGAACGACGCCGCCTTACTGTGGACT
TCTATACAATGAAGATGGAACTTGGCGACAATCCGCGCAAACGTTTCCTG
CAAGTGGACCAGATAGTCAAGGAACTGGAAAGGGTGGAGCGACCGGTGGC
CCCGAAGGATGTGGACATCGTAATTCTGAGCGGCCTCACCCCCCAGTACG
ACGCCGACGTTCGAATGCTGGAGAGCTCATCGGACATCGTCCAAGGAGCT
AAGTCGCCCGGGGAAGCGTGGTCAAAGCTCGTGCAGCACTACCACGCCAG
CGGCCTCAAGGAACGACGCCGCCTTACTGTGGACTTCTATACAATGAAGA
TGGAACTTGGCGACAATCCGCGCAAACGTTTCCTGCAAGTGGACCAGATA
GTCAAGGAACTGGAAAGGGTGGAGCGACCGGTGGCCCCGAAGGATGTGGA
CATCGTAATTCTGAGCGGCCTCACCCCCCAGTACGACGCCGACGTTCGAA
TGCTGGAGAGCTCATCGGAC
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