mRNA_H-elongata_contig108310.678.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108310.678.1
Unique NamemRNA_H-elongata_contig108310.678.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig108310.678.1 vs. uniprot
Match: D7FK97_ECTSI (Zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK97_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 4.340e-8
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:   22 KRLCSFYLKDRCRKGDACTFSHDVERKH 105
            KRLC+FYLK RC KG+ACTFSHDVERK+
Sbjct:  302 KRLCTFYLKGRCDKGEACTFSHDVERKN 329
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BLAST of mRNA_H-elongata_contig108310.678.1 vs. uniprot
Match: A0A6H5JLR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLR5_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 4.340e-8
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:   22 KRLCSFYLKDRCRKGDACTFSHDVERKH 105
            KRLC+FYLK RC KG+ACTFSHDVERK+
Sbjct:  285 KRLCTFYLKGRCDKGEACTFSHDVERKN 312
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BLAST of mRNA_H-elongata_contig108310.678.1 vs. uniprot
Match: R4XL21_TAPDE (C3H1-type domain-containing protein n=1 Tax=Taphrina deformans (strain PYCC 5710 / ATCC 11124 / CBS 356.35 / IMI 108563 / JCM 9778 / NBRC 8474) TaxID=1097556 RepID=R4XL21_TAPDE)

HSP 1 Score: 48.1 bits (113), Expect = 3.130e-5
Identity = 18/32 (56.25%), Postives = 23/32 (71.88%), Query Frame = 1 
Query:   16 RPKRLCSFYLKDRCRKGDACTFSHDVERKHCR 111
            RPKR C ++ + RC +GDACT+SHDV R   R
Sbjct:  280 RPKRPCKYFRQGRCSRGDACTYSHDVNRSEAR 311
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BLAST of mRNA_H-elongata_contig108310.678.1 vs. uniprot
Match: S7W9U8_SPRLO (Zinc finger protein n=1 Tax=Spraguea lophii (strain 42_110) TaxID=1358809 RepID=S7W9U8_SPRLO)

HSP 1 Score: 45.1 bits (105), Expect = 7.870e-5
Identity = 18/38 (47.37%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    1 ETTRDRPKR-LCSFYLKDRCRKGDACTFSHDVERKHCR 111
            E T+ R K+ LC F++   C +GDACT+SHD+E+  C+
Sbjct:   33 EITKPRIKKELCRFFINKACNRGDACTYSHDIEKFLCK 70
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108310.678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FK97_ECTSI4.340e-882.14Zinc finger protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5JLR5_9PHAE4.340e-882.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
R4XL21_TAPDE3.130e-556.25C3H1-type domain-containing protein n=1 Tax=Taphri... [more]
S7W9U8_SPRLO7.870e-547.37Zinc finger protein n=1 Tax=Spraguea lophii (strai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108310contigH-elongata_contig108310:444..563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929611.5626612-CDS-H-elongata_contig108310:443..5631622929611.5626612-CDS-H-elongata_contig108310:443..563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108310 444..563 -
1691679091.005482-CDS-H-elongata_contig108310:443..5631691679091.005482-CDS-H-elongata_contig108310:443..563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108310 444..563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108310.678.1prot_H-elongata_contig108310.678.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108310 444..563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108310.678.1

>prot_H-elongata_contig108310.678.1 ID=prot_H-elongata_contig108310.678.1|Name=mRNA_H-elongata_contig108310.678.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
ETTRDRPKRLCSFYLKDRCRKGDACTFSHDVERKHCRWA*
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mRNA from alignment at H-elongata_contig108310:444..563-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108310.678.1 ID=mRNA_H-elongata_contig108310.678.1|Name=mRNA_H-elongata_contig108310.678.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=120bp|location=Sequence derived from alignment at H-elongata_contig108310:444..563- (Himanthalia elongata Himel1 dioecious)
GAAACGACGCGGGACAGACCCAAGAGGTTGTGCAGCTTCTACTTGAAGGA
TAGATGTCGGAAGGGCGATGCTTGCACCTTCAGCCACGATGTAGAACGCA
AGCACTGCAGGTGGGCCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig108310:444..563-

>mRNA_H-elongata_contig108310.678.1 ID=mRNA_H-elongata_contig108310.678.1|Name=mRNA_H-elongata_contig108310.678.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig108310:444..563- (Himanthalia elongata Himel1 dioecious)
GAAACGACGCGGGACAGACCCAAGAGGTTGTGCAGCTTCTACTTGAAGGA
TAGATGTCGGAAGGGCGATGCTTGCACCTTCAGCCACGATGTAGAACGCA
AGCACTGCAGGTGGGCCTAAGAAACGACGCGGGACAGACCCAAGAGGTTG
TGCAGCTTCTACTTGAAGGATAGATGTCGGAAGGGCGATGCTTGCACCTT
CAGCCACGATGTAGAACGCAAGCACTGCAGGTGGGCCTAA
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