mRNA_H-elongata_contig108283.675.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108283.675.1
Unique NamemRNA_H-elongata_contig108283.675.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig108283.675.1 vs. uniprot
Match: D7FT23_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT23_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.780e-17
Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 2 
Query:   74 SNSSTAPADLTTLTTMINSHLKNHHERSAEACQALMGNVAANLEGLMDRHFSFNAEPSRVSEMLLFHIMFSG 289
            S+ S+  A L  +   IN HL++HH R+++ CQA+M  V  +LEGL+D+HFS +AEPSRVSEMLLFH+MFSG
Sbjct:   10 SSDSSEEASLEGVMEKINRHLRDHHARTSDECQAVMSTVERSLEGLVDKHFSVDAEPSRVSEMLLFHVMFSG 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108283.675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT23_ECTSI1.780e-1756.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108283contigH-elongata_contig108283:60..351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size292
Cds size291
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929611.3805952-UTR-H-elongata_contig108283:59..601622929611.3805952-UTR-H-elongata_contig108283:59..60Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108283 60..60 +
1691679090.9284797-UTR-H-elongata_contig108283:59..601691679090.9284797-UTR-H-elongata_contig108283:59..60Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108283 60..60 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929611.394945-CDS-H-elongata_contig108283:60..3511622929611.394945-CDS-H-elongata_contig108283:60..351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108283 61..351 +
1691679090.942428-CDS-H-elongata_contig108283:60..3511691679090.942428-CDS-H-elongata_contig108283:60..351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108283 61..351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108283.675.1prot_H-elongata_contig108283.675.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108283 61..351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108283.675.1

>prot_H-elongata_contig108283.675.1 ID=prot_H-elongata_contig108283.675.1|Name=mRNA_H-elongata_contig108283.675.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MNDHLISLGTQDISLRERRVESTRSNSSTAPADLTTLTTMINSHLKNHHE
RSAEACQALMGNVAANLEGLMDRHFSFNAEPSRVSEMLLFHIMFSG*
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mRNA from alignment at H-elongata_contig108283:60..351+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108283.675.1 ID=mRNA_H-elongata_contig108283.675.1|Name=mRNA_H-elongata_contig108283.675.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=292bp|location=Sequence derived from alignment at H-elongata_contig108283:60..351+ (Himanthalia elongata Himel1 dioecious)
CATGAATGACCACCTAATCTCTCTGGGAACCCAAGATATTTCTCTAAGAG
AGAGAAGAGTGGAATCCACACGTTCCAACAGCTCTACAGCACCAGCTGAT
CTCACGACTCTCACGACTATGATCAACTCACACTTGAAGAACCACCATGA
ACGGAGTGCTGAGGCGTGCCAGGCCCTTATGGGCAACGTAGCGGCTAACC
TCGAGGGGCTCATGGACAGACATTTCAGCTTTAACGCTGAACCTTCGCGA
GTATCGGAGATGCTGCTGTTCCACATAATGTTCTCGGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig108283:60..351+

>mRNA_H-elongata_contig108283.675.1 ID=mRNA_H-elongata_contig108283.675.1|Name=mRNA_H-elongata_contig108283.675.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig108283:60..351+ (Himanthalia elongata Himel1 dioecious)
ATGAATGACCACCTAATCTCTCTGGGAACCCAAGATATTTCTCTAAGAGA
GAGAAGAGTGGAATCCACACGTTCCAACAGCTCTACAGCACCAGCTGATC
TCACGACTCTCACGACTATGATCAACTCACACTTGAAGAACCACCATGAA
CGGAGTGCTGAGGCGTGCCAGGCCCTTATGGGCAACGTAGCGGCTAACCT
CGAGGGGCTCATGGACAGACATTTCAGCTTTAACGCTGAACCTTCGCGAG
TATCGGAGATGCTGCTGTTCCACATAATGTTCTCGGGGTGAATGAATGAC
CACCTAATCTCTCTGGGAACCCAAGATATTTCTCTAAGAGAGAGAAGAGT
GGAATCCACACGTTCCAACAGCTCTACAGCACCAGCTGATCTCACGACTC
TCACGACTATGATCAACTCACACTTGAAGAACCACCATGAACGGAGTGCT
GAGGCGTGCCAGGCCCTTATGGGCAACGTAGCGGCTAACCTCGAGGGGCT
CATGGACAGACATTTCAGCTTTAACGCTGAACCTTCGCGAGTATCGGAGA
TGCTGCTGTTCCACATAATGTTCTCGGGGTGA
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