mRNA_H-elongata_contig108250.671.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig108250.671.1 vs. uniprot
Match: D7FWE2_ECTSI (WD40 repeat protein flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWE2_ECTSI) HSP 1 Score: 210 bits (535), Expect = 3.660e-60 Identity = 130/141 (92.20%), Postives = 134/141 (95.04%), Query Frame = 1
Query: 13 SNLSMNQTLEGHEGSVVCVTWNAAYSKLTTCDENGLIIVWMLHKGLWFEEMINNRNKSAVRDMKWTSDGQKICIIYADGAVIVGSVDGNRLWGKELEFGLQNVVXXXXXXXXXXXXXXXXXXXXXXXXXXLRVMTLPKGAE 435
SNLSMNQTLEGHEGSVVCVTWNA YSKLTTCDE GLIIVWMLHKGLWFEEMINNR+KSAVRDMKWTS+GQKICIIYADGAVIVGSVDGNRLWGKEL+ GLQN XXXXXXXXXXXXXXXXXXXXXXXXXX R MTLP+GAE
Sbjct: 77 SNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDEQGLIIVWMLHKGLWFEEMINNRHKSAVRDMKWTSNGQKICIIYADGAVIVGSVDGNRLWGKELDMGLQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAMTLPEGAE 217
BLAST of mRNA_H-elongata_contig108250.671.1 vs. uniprot
Match: A0A7S3Y5Z0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5Z0_HETAK) HSP 1 Score: 187 bits (476), Expect = 2.460e-58 Identity = 88/103 (85.44%), Postives = 91/103 (88.35%), Query Frame = 1
Query: 13 SNLSMNQTLEGHEGSVVCVTWNAAYSKLTTCDENGLIIVWMLHKGLWFEEMINNRNKSAVRDMKWTSDGQKICIIYADGAVIVGSVDGNRLWGKELEFGLQNV 321
SNLSMNQTLEGH GSV CVTWNA Y KLTT D+NGLIIVWMLHKG+WFEEMINNRNKS V DMKWTSDGQKICIIY DGAVIVGSVDGNRLWGKEL+ L V
Sbjct: 5 SNLSMNQTLEGHNGSVCCVTWNANYRKLTTSDQNGLIIVWMLHKGMWFEEMINNRNKSVVNDMKWTSDGQKICIIYEDGAVIVGSVDGNRLWGKELDINLSFV 107
BLAST of mRNA_H-elongata_contig108250.671.1 vs. uniprot
Match: A0A7S2BR82_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BR82_9STRA) HSP 1 Score: 186 bits (471), Expect = 1.290e-57 Identity = 85/100 (85.00%), Postives = 91/100 (91.00%), Query Frame = 1
Query: 13 SNLSMNQTLEGHEGSVVCVTWNAAYSKLTTCDENGLIIVWMLHKGLWFEEMINNRNKSAVRDMKWTSDGQKICIIYADGAVIVGSVDGNRLWGKELEFGL 312
SNLSMNQTL+GH G VVCVTWNA Y KLTT DE+GLIIVWMLHKG+WFEEMINNRNKS V+DMKWT+DG KICI+YADGAVIVGSVDGNRLWGKELE L
Sbjct: 57 SNLSMNQTLDGHHGKVVCVTWNALYRKLTTSDESGLIIVWMLHKGMWFEEMINNRNKSVVKDMKWTADGSKICIVYADGAVIVGSVDGNRLWGKELEMQL 156
BLAST of mRNA_H-elongata_contig108250.671.1 vs. uniprot
Match: A0A2J7ZHB6_9CHLO (WD repeat domain-containing protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZHB6_9CHLO) HSP 1 Score: 179 bits (453), Expect = 2.790e-54 Identity = 82/100 (82.00%), Postives = 89/100 (89.00%), Query Frame = 1
Query: 1 GTGGSNLSMNQTLEGHEGSVVCVTWNAAYSKLTTCDENGLIIVWMLHKGLWFEEMINNRNKSAVRDMKWTSDGQKICIIYADGAVIVGSVDGNRLWGKEL 300
G G NLS+NQTLEGH G+VVCV WN A+ KLTT DE GLIIVWMLHKG+WFEEMINNRNKS V+DMKWTS+G+KICIIY DGAVIVGSVDGNRLWGKEL
Sbjct: 58 GAAGGNLSLNQTLEGHNGAVVCVCWNNAFQKLTTSDEFGLIIVWMLHKGMWFEEMINNRNKSVVKDMKWTSNGEKICIIYEDGAVIVGSVDGNRLWGKEL 157
BLAST of mRNA_H-elongata_contig108250.671.1 vs. uniprot
Match: A0A7S0WI31_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WI31_9CHLO) HSP 1 Score: 178 bits (452), Expect = 3.090e-54 Identity = 84/104 (80.77%), Postives = 88/104 (84.62%), Query Frame = 1
Query: 1 GTGGSNLSMNQTLEGHEGSVVCVTWNAAYSKLTTCDENGLIIVWMLHKGLWFEEMINNRNKSAVRDMKWTSDGQKICIIYADGAVIVGSVDGNRLWGKELEFGL 312
G SNLSMNQTLEGH GSV+ V WN Y KLTT D+ GLIIVWMLHKG+WFEEMINNRNKS VRDMKWTSDGQKICI+Y DGAVIVGSVDGNRLWGKEL L
Sbjct: 57 GPAASNLSMNQTLEGHNGSVMVVNWNENYRKLTTSDQYGLIIVWMLHKGMWFEEMINNRNKSVVRDMKWTSDGQKICIVYEDGAVIVGSVDGNRLWGKELALSL 160
BLAST of mRNA_H-elongata_contig108250.671.1 vs. uniprot
Match: A0A7S0HEY4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HEY4_9EUKA) HSP 1 Score: 177 bits (449), Expect = 2.640e-53 Identity = 83/103 (80.58%), Postives = 89/103 (86.41%), Query Frame = 1
Query: 13 SNLSMNQTLEGHEGSVVCVTWNAAYSKLTTCDENGLIIVWMLHKGLWFEEMINNRNKSAVRDMKWTSDGQKICIIYADGAVIVGSVDGNRLWGKELEFGLQNV 321
SNLSMNQTLEGH GSV+CV WN Y KLTT D+ GLIIVWMLHKG+WFEEMINNRNKS VR MKWT DGQ+ICIIY DGAVIVGSVDGNRLWGKEL+ L +V
Sbjct: 70 SNLSMNQTLEGHNGSVMCVCWNENYRKLTTSDQYGLIIVWMLHKGMWFEEMINNRNKSTVRGMKWTPDGQRICIIYEDGAVIVGSVDGNRLWGKELKMQLAHV 172
BLAST of mRNA_H-elongata_contig108250.671.1 vs. uniprot
Match: A0A835YIA3_9STRA (WD40 repeat protein flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIA3_9STRA) HSP 1 Score: 191 bits (484), Expect = 2.710e-53 Identity = 88/104 (84.62%), Postives = 96/104 (92.31%), Query Frame = 1
Query: 10 GSNLSMNQTLEGHEGSVVCVTWNAAYSKLTTCDENGLIIVWMLHKGLWFEEMINNRNKSAVRDMKWTSDGQKICIIYADGAVIVGSVDGNRLWGKELEFGLQNV 321
GS+LSMNQTLEGH GSV+CVTWN+ YSKLTT DENGLIIVWMLHKG+W+EEMINNR KS VRDMKWTSDGQKICI+Y DGAVIVGSVDGNRLWGKEL+ LQ+V
Sbjct: 56 GSDLSMNQTLEGHNGSVMCVTWNSNYSKLTTSDENGLIIVWMLHKGMWYEEMINNRGKSVVRDMKWTSDGQKICIVYEDGAVIVGSVDGNRLWGKELDIYLQHV 159
BLAST of mRNA_H-elongata_contig108250.671.1 vs. uniprot
Match: A0A7S0LYC8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LYC8_9CRYP) HSP 1 Score: 178 bits (451), Expect = 6.470e-53 Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = 1
Query: 7 GGSNLSMNQTLEGHEGSVVCVTWNAAYSKLTTCDENGLIIVWMLHKGLWFEEMINNRNKSAVRDMKWTSDGQKICIIYADGAVIVGSVDGNRLWGKELEFGLQNV 321
G SNL+MNQTLEGH V+C WN A+ KLTT DE+GLIIVWMLHKGLWFEEMINNRNKS VRDMKW +DGQKICI+Y DGAVIVGSVDGNRLWGK+L+ LQ V
Sbjct: 57 GTSNLTMNQTLEGHSEPVICAAWNEAFKKLTTSDESGLIIVWMLHKGLWFEEMINNRNKSVVRDMKWNADGQKICIVYEDGAVIVGSVDGNRLWGKDLKMQLQYV 161
BLAST of mRNA_H-elongata_contig108250.671.1 vs. uniprot
Match: F0XVP7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVP7_AURAN) HSP 1 Score: 187 bits (476), Expect = 3.230e-52 Identity = 87/103 (84.47%), Postives = 93/103 (90.29%), Query Frame = 1
Query: 13 SNLSMNQTLEGHEGSVVCVTWNAAYSKLTTCDENGLIIVWMLHKGLWFEEMINNRNKSAVRDMKWTSDGQKICIIYADGAVIVGSVDGNRLWGKELEFGLQNV 321
SNLSMNQTLEGH GSV+CVTWNA Y KLTT D+NGLIIVWMLHKG+WFEEMINNRNKS VR MKWT+DGQKICI+Y DGAVIVGSVDGNRLWGK+L GL NV
Sbjct: 83 SNLSMNQTLEGHHGSVMCVTWNANYRKLTTSDQNGLIIVWMLHKGVWFEEMINNRNKSVVRAMKWTADGQKICIVYEDGAVIVGSVDGNRLWGKDLTCGLTNV 185
BLAST of mRNA_H-elongata_contig108250.671.1 vs. uniprot
Match: A0A813B5A4_9DINO (WDR35 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B5A4_9DINO) HSP 1 Score: 174 bits (441), Expect = 1.290e-51 Identity = 82/100 (82.00%), Postives = 87/100 (87.00%), Query Frame = 1
Query: 13 SNLSMNQTLEGHEGSVVCVTWNAAYSKLTTCDENGLIIVWMLHKGLWFEEMINNRNKSAVRDMKWTSDGQKICIIYADGAVIVGSVDGNRLWGKELEFGL 312
SNLSMNQTLEGH G V+ VTWNA + KLTT D+ GLIIVWMLHKG WFEEMINNRNKS VRDMKWTSDG KICIIY DGAVIVGSVDGNR+WGKEL+ L
Sbjct: 59 SNLSMNQTLEGHNGGVMVVTWNAQHKKLTTSDQYGLIIVWMLHKGTWFEEMINNRNKSVVRDMKWTSDGLKICIIYEDGAVIVGSVDGNRVWGKELKTNL 158 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108250.671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig108250.671.1 >prot_H-elongata_contig108250.671.1 ID=prot_H-elongata_contig108250.671.1|Name=mRNA_H-elongata_contig108250.671.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp MNQTLEGHEGSVVCVTWNAAYSKLTTCDENGLIIVWMLHKGLWFEEMINNback to top mRNA from alignment at H-elongata_contig108250:158..1826- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig108250.671.1 ID=mRNA_H-elongata_contig108250.671.1|Name=mRNA_H-elongata_contig108250.671.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1669bp|location=Sequence derived from alignment at H-elongata_contig108250:158..1826- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig108250:158..1826- >mRNA_H-elongata_contig108250.671.1 ID=mRNA_H-elongata_contig108250.671.1|Name=mRNA_H-elongata_contig108250.671.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig108250:158..1826- (Himanthalia elongata Himel1 dioecious)back to top |