mRNA_H-elongata_contig108234.669.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig108234.669.1 vs. uniprot
Match: D8LJW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW1_ECTSI) HSP 1 Score: 209 bits (531), Expect = 8.400e-59 Identity = 123/208 (59.13%), Postives = 142/208 (68.27%), Query Frame = 1
Query: 1 RFCPYLGSPTVPAPADDPPTSNGGSLPLSPVTPMRFPREGASP---AATRGGVHASPGAAAAARAINEEIAAAGHKVTVNPSRLTPTRQRSKGAGVGEEWSGSGNT--ENKGMLSFVCFSMGGLIARSALLEPAMVPYLSNLRCFVTLACPHLGQTSTPMSFFKTGAWAVRKLTGLRVLHELDLDDAENIHETTLYRLSLSPGLEKFR 609
RFCPYL + VP PA PT N GS+PLSP A+T V A PG+AAAAR I+EE+ A TPTR G ++KGMLSFVCFS+GGL+ARSALLEPAMVPYL++++CFVTLACPHLGQTSTP+SFFKTGAWAVRKLTGL+VLHELDLDDA++ ET LYRLSLSPGLE+FR
Sbjct: 1010 RFCPYLENAFVPVPAPGGPTPNAGSVPLSPXXXXXXXXXXXXXXNLASTA--VCAPPGSAAAARTISEELRA---------GMGTPTRPPKGGXXXXXXXXXXXXXVPQSKGMLSFVCFSLGGLVARSALLEPAMVPYLTSMQCFVTLACPHLGQTSTPLSFFKTGAWAVRKLTGLQVLHELDLDDADDPRETALYRLSLSPGLERFR 1206
BLAST of mRNA_H-elongata_contig108234.669.1 vs. uniprot
Match: A0A6H5K5M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M7_9PHAE) HSP 1 Score: 197 bits (502), Expect = 6.140e-55 Identity = 115/207 (55.56%), Postives = 135/207 (65.22%), Query Frame = 1
Query: 1 RFCPYLGSPTVPAPADDPPTSNGGSLPLSPVTPMRFPREGASPAATRGGVHAS----PGAAAAARAINEEIAAAGHKVTVNPSRLTPTRQRSKGAGVGEEWSGSGNTENKGMLSFVCFSMGGLIARSALLEPAMVPYLSNLRCFVTLACPHLGQTSTPMSFFKTGAWAVRKLTGLRVLHELDLDDAENIHETTLYRLSLSPGLEKFR 609
RFCPYL + VP PA PT GS+PLSP PG+AA AR I+EE+ A +P+R P ++KGMLSFVCFS+GGL+ARSALLEPAMVPYL++++CFVTLACPHLGQTSTP+SFFKTGAWAVRKLTGL+VLHELDLDDA++ ET LYRLSLSPGLE+FR
Sbjct: 807 RFCPYLENAFVPVPATGAPTPKAGSVPLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXPGSAATARTISEELRAG----MGSPTR--PXXXXXXXXXXXXXXXXXXVPQSKGMLSFVCFSLGGLVARSALLEPAMVPYLTSMQCFVTLACPHLGQTSTPLSFFKTGAWAVRKLTGLQVLHELDLDDADDPRETALYRLSLSPGLERFR 1007
BLAST of mRNA_H-elongata_contig108234.669.1 vs. uniprot
Match: A0A6V1VCI1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VCI1_HETAK) HSP 1 Score: 93.6 bits (231), Expect = 1.250e-19 Identity = 49/101 (48.51%), Postives = 65/101 (64.36%), Query Frame = 1
Query: 307 TENKGMLSFVCFSMGGLIARSALLEPAMVPYLSNLRCFVTLACPHLGQTSTPMSFFKTGAWAVRKLTGLRVLHELDLDDAENIHETTLYRLSLSPGLEKFR 609
T +G LSFV +SMG L+ R+AL A+ +L L F++L+ PHLG + KTG WA+R +RVL EL+L DAE+ ETTLY+LS +PGL FR
Sbjct: 74 TRPRGRLSFVGYSMGSLVIRAALASRALSLFLPRLHAFLSLSSPHLGCPYSASGLIKTGMWALRTFMKVRVLEELELKDAEHPTETTLYKLSQTPGLGLFR 174
BLAST of mRNA_H-elongata_contig108234.669.1 vs. uniprot
Match: A0A446SW56_TRITD (DUF676 domain-containing protein n=2 Tax=Poaceae TaxID=4479 RepID=A0A446SW56_TRITD) HSP 1 Score: 82.4 bits (202), Expect = 2.290e-15 Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 1
Query: 325 LSFVCFSMGGLIARSALLEPAMVPYLSNLRCFVTLACPHLGQTSTPMSFFKTGAWAVRKLTGLRVLHELDLDDAENIHETTLYRLSLSPGLEKFR 609
LSFV S+G +I R+AL EPA+ PYL NL +++++ PHLG + S F +G W ++KL G + +H+L D ++ T YRL S LE F+
Sbjct: 88 LSFVGHSIGNIIIRTALAEPALQPYLKNLFTYMSISGPHLGYWYSSNSLFNSGLWLLKKLKGAQCIHQLTFSDDQDPQNTFFYRLCKSKTLENFK 182
BLAST of mRNA_H-elongata_contig108234.669.1 vs. uniprot
Match: A0A804P7S0_MAIZE (DUF676 domain-containing protein n=3 Tax=Zea mays TaxID=4577 RepID=A0A804P7S0_MAIZE) HSP 1 Score: 81.6 bits (200), Expect = 2.390e-15 Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 1
Query: 325 LSFVCFSMGGLIARSALLEPAMVPYLSNLRCFVTLACPHLGQTSTPMSFFKTGAWAVRKLTGLRVLHELDLDDAENIHETTLYRLSLSPGLEKFR 609
LSFV S+G +I RSAL EPA+ PYL NL +++++ PHLG + S F +G W ++KL + +H+L D ++ H T Y+L LE F+
Sbjct: 46 LSFVGHSIGNIIIRSALAEPALQPYLKNLYTYMSISGPHLGHWYSSNSLFNSGLWLLKKLKNAQCIHQLTFSDDQDPHNTYFYKLCKLKTLENFK 140
BLAST of mRNA_H-elongata_contig108234.669.1 vs. uniprot
Match: A0A453K8P0_AEGTS (DUF676 domain-containing protein n=5 Tax=BOP clade TaxID=359160 RepID=A0A453K8P0_AEGTS) HSP 1 Score: 82.8 bits (203), Expect = 3.820e-15 Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 1
Query: 325 LSFVCFSMGGLIARSALLEPAMVPYLSNLRCFVTLACPHLGQTSTPMSFFKTGAWAVRKLTGLRVLHELDLDDAENIHETTLYRLSLSPGLEKFR 609
LSFV S+G +I R+AL EPA+ PYL NL +++++ PHLG + S F +G W ++KL G + +H+L D ++ T YRL S LE F+
Sbjct: 175 LSFVGHSIGNIIIRTALAEPALQPYLKNLYTYMSISGPHLGYWYSSNSLFNSGLWLLKKLKGAQCIHQLTFSDDQDPQNTFFYRLCKSKTLENFK 269
BLAST of mRNA_H-elongata_contig108234.669.1 vs. uniprot
Match: A0A1D6GGK1_MAIZE (Putative serine esterase family protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6GGK1_MAIZE) HSP 1 Score: 81.6 bits (200), Expect = 5.700e-15 Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 1
Query: 325 LSFVCFSMGGLIARSALLEPAMVPYLSNLRCFVTLACPHLGQTSTPMSFFKTGAWAVRKLTGLRVLHELDLDDAENIHETTLYRLSLSPGLEKFR 609
LSFV S+G +I RSAL EPA+ PYL NL +++++ PHLG + S F +G W ++KL + +H+L D ++ H T Y+L LE F+
Sbjct: 110 LSFVGHSIGNIIIRSALAEPALQPYLKNLYTYMSISGPHLGHWYSSNSLFNSGLWLLKKLKNAQCIHQLTFSDDQDPHNTYFYKLCKLKTLENFK 204
BLAST of mRNA_H-elongata_contig108234.669.1 vs. uniprot
Match: A0A453K8G7_AEGTS (DUF676 domain-containing protein n=7 Tax=Triticeae TaxID=147389 RepID=A0A453K8G7_AEGTS) HSP 1 Score: 82.8 bits (203), Expect = 6.670e-15 Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 1
Query: 325 LSFVCFSMGGLIARSALLEPAMVPYLSNLRCFVTLACPHLGQTSTPMSFFKTGAWAVRKLTGLRVLHELDLDDAENIHETTLYRLSLSPGLEKFR 609
LSFV S+G +I R+AL EPA+ PYL NL +++++ PHLG + S F +G W ++KL G + +H+L D ++ T YRL S LE F+
Sbjct: 460 LSFVGHSIGNIIIRTALAEPALQPYLKNLYTYMSISGPHLGYWYSSNSLFNSGLWLLKKLKGAQCIHQLTFSDDQDPQNTFFYRLCKSKTLENFK 554
BLAST of mRNA_H-elongata_contig108234.669.1 vs. uniprot
Match: M8BSC6_AEGTA (DUF676 domain-containing protein n=6 Tax=Aegilops tauschii TaxID=37682 RepID=M8BSC6_AEGTA) HSP 1 Score: 82.8 bits (203), Expect = 7.040e-15 Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 1
Query: 325 LSFVCFSMGGLIARSALLEPAMVPYLSNLRCFVTLACPHLGQTSTPMSFFKTGAWAVRKLTGLRVLHELDLDDAENIHETTLYRLSLSPGLEKFR 609
LSFV S+G +I R+AL EPA+ PYL NL +++++ PHLG + S F +G W ++KL G + +H+L D ++ T YRL S LE F+
Sbjct: 639 LSFVGHSIGNIIIRTALAEPALQPYLKNLYTYMSISGPHLGYWYSSNSLFNSGLWLLKKLKGAQCIHQLTFSDDQDPQNTFFYRLCKSKTLENFK 733
BLAST of mRNA_H-elongata_contig108234.669.1 vs. uniprot
Match: C4IYS4_MAIZE (DUF676 domain-containing protein n=4 Tax=Zea mays TaxID=4577 RepID=C4IYS4_MAIZE) HSP 1 Score: 81.3 bits (199), Expect = 9.260e-15 Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 1
Query: 325 LSFVCFSMGGLIARSALLEPAMVPYLSNLRCFVTLACPHLGQTSTPMSFFKTGAWAVRKLTGLRVLHELDLDDAENIHETTLYRLSLSPGLEKFR 609
LSFV S+G +I RSAL EPA+ PYL NL +++++ PHLG + S F +G W ++KL + +H+L D ++ H T Y+L LE F+
Sbjct: 126 LSFVGHSIGNIIIRSALAEPALQPYLKNLYTYMSISGPHLGYWYSSNSLFNSGLWLLKKLKNAQCIHQLTFSDDQDPHNTYFYKLCKLKTLENFK 220 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108234.669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig108234.669.1 >prot_H-elongata_contig108234.669.1 ID=prot_H-elongata_contig108234.669.1|Name=mRNA_H-elongata_contig108234.669.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp RFCPYLGSPTVPAPADDPPTSNGGSLPLSPVTPMRFPREGASPAATRGGVback to top mRNA from alignment at H-elongata_contig108234:137..2108+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig108234.669.1 ID=mRNA_H-elongata_contig108234.669.1|Name=mRNA_H-elongata_contig108234.669.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1972bp|location=Sequence derived from alignment at H-elongata_contig108234:137..2108+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig108234:137..2108+ >mRNA_H-elongata_contig108234.669.1 ID=mRNA_H-elongata_contig108234.669.1|Name=mRNA_H-elongata_contig108234.669.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1224bp|location=Sequence derived from alignment at H-elongata_contig108234:137..2108+ (Himanthalia elongata Himel1 dioecious)back to top |