mRNA_H-elongata_contig108206.667.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig108206.667.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE) HSP 1 Score: 135 bits (341), Expect = 3.270e-36 Identity = 62/75 (82.67%), Postives = 69/75 (92.00%), Query Frame = 1
Query: 7 AEFGIKLSDLAGGTTDSGPDVKAMCVNFLLLLHKIYWDWCECHLADKAAENAFGTSADPQKSKNKGARQVIQLMI 231
AE+GIKLSDLAGGTTDSG DVKAMCVN LL LHKI+WDWC+CHLADK+AEN FGTSADPQ+SKNK AR VI+L+I
Sbjct: 286 AEYGIKLSDLAGGTTDSGSDVKAMCVNILLGLHKIWWDWCDCHLADKSAENTFGTSADPQQSKNKIARDVIKLVI 360
BLAST of mRNA_H-elongata_contig108206.667.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE) HSP 1 Score: 137 bits (344), Expect = 4.810e-36 Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 1
Query: 1 MKAEFGIKLSDLAGGTTDSGPDVKAMCVNFLLLLHKIYWDWCECHLADKAAENAFGTSADPQKSKNKGARQVIQLMI 231
+ AEFGIKLSDLAGGTTDSG D+KAMC NFLL H +YWDWC CHLAD+AAE AFGTSADPQKSKNK ARQV+ L+I
Sbjct: 108 LLAEFGIKLSDLAGGTTDSGSDIKAMCTNFLLAQHNVYWDWCVCHLADRAAEAAFGTSADPQKSKNKDARQVVSLII 184
BLAST of mRNA_H-elongata_contig108206.667.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE) HSP 1 Score: 129 bits (325), Expect = 3.090e-33 Identity = 59/74 (79.73%), Postives = 64/74 (86.49%), Query Frame = 1
Query: 10 EFGIKLSDLAGGTTDSGPDVKAMCVNFLLLLHKIYWDWCECHLADKAAENAFGTSADPQKSKNKGARQVIQLMI 231
EFG+K+SDLAGGTTDSG DVKAMCVNFLL HK WDWC CHLAD+AAE AFGTSADPQK KNK AR V+QL+I
Sbjct: 306 EFGVKISDLAGGTTDSGSDVKAMCVNFLLAQHKGSWDWCVCHLADRAAEQAFGTSADPQKPKNKDARGVVQLVI 379
BLAST of mRNA_H-elongata_contig108206.667.1 vs. uniprot
Match: A0A6H5KS21_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS21_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 3.640e-20 Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 1
Query: 10 EFGIKLSDLAGGTTDSGPDVKAMCVNFLLLLHKIYWDWCECHLADKAAENAFGTSADPQKSKNKGARQVIQLMI 231
EFG++ SDLA GTTDSG DVK++ VN L + + W+WC CHL KAAE+AFGT DPQKSKN R++++ +I
Sbjct: 236 EFGLRASDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCCCHLMVKAAEDAFGTHPDPQKSKNPEGRKMLKNVI 309
BLAST of mRNA_H-elongata_contig108206.667.1 vs. uniprot
Match: A0A6H5KEE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE6_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 6.380e-20 Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1
Query: 10 EFGIKLSDLAGGTTDSGPDVKAMCVNFLLLLHKIYWDWCECHLADKAAENAFGTSADPQKSKNKGARQVIQLMI 231
EFG++ SDLA GTTDSG DVK+ VN L + + W+WC CHL KAAE+ FGT DPQKSKN AR +++ +I
Sbjct: 39 EFGLRPSDLASGTTDSGSDVKSASVNGLYPQYGVLWNWCFCHLMVKAAEDGFGTHVDPQKSKNPEARDMLKNVI 112
BLAST of mRNA_H-elongata_contig108206.667.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 8.450e-20 Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 1
Query: 10 EFGIKLSDLAGGTTDSGPDVKAMCVNFLLLLHKIYWDWCECHLADKAAENAFGTSADPQKSKNKGARQVIQLMI 231
EFG++ SDLA GTTDSG DVK++ VN L + + W+WC CHL KAAE+AFGT DPQ SKN AR +++ +I
Sbjct: 71 EFGLRPSDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCYCHLMVKAAEDAFGTRPDPQMSKNPEARNMLKNLI 144
BLAST of mRNA_H-elongata_contig108206.667.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 3.550e-19 Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1
Query: 10 EFGIKLSDLAGGTTDSGPDVKAMCVNFLLLLHKIYWDWCECHLADKAAENAFGTSADPQKSKNKGARQVIQLMI 231
EFG + SDLA GTTDSG DVK++ VN L + + W+WC CHL KAAE+AFGT DPQKSKN A +++ +I
Sbjct: 79 EFGRRPSDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCYCHLMIKAAEDAFGTHPDPQKSKNPEAHNMLKNLI 152
BLAST of mRNA_H-elongata_contig108206.667.1 vs. uniprot
Match: A0A6H5L8D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D8_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 4.620e-19 Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 1
Query: 10 EFGIKLSDLAGGTTDSGPDVKAMCVNFLLLLHKIYWDWCECHLADKAAENAFGTSADPQKSKNKGARQVIQLMI 231
EFG++ SDLA GT DSG DVK++ N L + W+WC CHL KAAE+ FGT DPQKSKN AR +++ +I
Sbjct: 90 EFGLRTSDLASGTADSGSDVKSVSFNGLHPQFGVLWNWCFCHLMVKAAEDGFGTHVDPQKSKNPEARDMLKKLI 163
BLAST of mRNA_H-elongata_contig108206.667.1 vs. uniprot
Match: A0A6H5JWR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR2_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 8.410e-19 Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 1
Query: 10 EFGIKLSDLAGGTTDSGPDVKAMCVNFLLLLHKIYWDWCECHLADKAAENAFGTSADPQKSKNKGARQVIQLMI 231
EFG++ SD+A GTTDSG DVK++ +N L + + W+WC CHL K AE+ FGT DPQKSKN AR +++ +I
Sbjct: 136 EFGLRPSDIASGTTDSGSDVKSVSINGLHPHYGVLWNWCFCHLMVKTAEDGFGTHVDPQKSKNPEARDMLKNVI 209
BLAST of mRNA_H-elongata_contig108206.667.1 vs. uniprot
Match: A0A6H5JTT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT2_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 2.120e-16 Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 1
Query: 10 EFGIKLSDLAGGTTDSGPDVKAMCVNFLLLLHKIYWDWCECHLADKAAENAFGTSADPQKSKNKGARQVIQLMI 231
EFG++ SDLA GTTDSG DVK++ VN L + W+ C HL KAAE+ FGT DPQKSKN AR +++ +I
Sbjct: 47 EFGLRPSDLASGTTDSGLDVKSVSVNGLHPQFGVLWNCCFYHLMVKAAEDGFGTHVDPQKSKNPKARDMLKKLI 120 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108206.667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig108206.667.1 >prot_H-elongata_contig108206.667.1 ID=prot_H-elongata_contig108206.667.1|Name=mRNA_H-elongata_contig108206.667.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp MKAEFGIKLSDLAGGTTDSGPDVKAMCVNFLLLLHKIYWDWCECHLADKAback to top mRNA from alignment at H-elongata_contig108206:77..310+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig108206.667.1 ID=mRNA_H-elongata_contig108206.667.1|Name=mRNA_H-elongata_contig108206.667.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig108206:77..310+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig108206:77..310+ >mRNA_H-elongata_contig108206.667.1 ID=mRNA_H-elongata_contig108206.667.1|Name=mRNA_H-elongata_contig108206.667.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig108206:77..310+ (Himanthalia elongata Himel1 dioecious)back to top |