mRNA_H-elongata_contig108132.662.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108132.662.1
Unique NamemRNA_H-elongata_contig108132.662.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Match: A0A2I4CWC1_9TELE (crooked neck-like protein 1 n=1 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4CWC1_9TELE)

HSP 1 Score: 123 bits (308), Expect = 1.610e-34
Identity = 52/78 (66.67%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   28 EMRSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERWMEWEPEDNAWSAYVKFEMRQEEPTKAR 261
            EM+S+  NHARN+WDRA+ +LPRV+QFWYKY+YMEEMLGN A  R +FERWMEWEPE+ AW +Y+ FE+R +E  KAR
Sbjct:    2 EMKSRQVNHARNIWDRAITILPRVNQFWYKYTYMEEMLGNVAGCRQVFERWMEWEPEEQAWHSYINFELRYKEVDKAR 79          
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Match: A0A2G9HXZ8_9LAMI (Cell cycle control protein (Crooked neck) n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HXZ8_9LAMI)

HSP 1 Score: 122 bits (306), Expect = 1.520e-30
Identity = 51/79 (64.56%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    1 TVWLRYAEFEMRSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERWMEWEPEDNAWSAYVKFEMR 237
            T+WL+YA+FEM++KF NHARN+WDRA  LLP VDQ WYK  +MEEMLGN A AR I+ERWM+W P+   W +Y+KFE+R
Sbjct:  100 TLWLKYADFEMKNKFVNHARNIWDRATELLPTVDQLWYKSIHMEEMLGNVAGARQIYERWMKWMPDPQGWLSYIKFELR 178          
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Match: A0A183KDF0_9TREM (Uncharacterized protein n=1 Tax=Schistosoma curassoni TaxID=6186 RepID=A0A183KDF0_9TREM)

HSP 1 Score: 120 bits (300), Expect = 8.710e-30
Identity = 53/78 (67.95%), Postives = 63/78 (80.77%), Query Frame = 1
Query:   28 EMRSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERWMEWEPEDNAWSAYVKFEMRQEEPTKAR 261
            EMR K  NHARN+WDRAV L+PR +QFWYKY+YMEE LGN A AR IFERWMEW+PE+ AW AY+ FE+R +E  +AR
Sbjct:    2 EMRHKQVNHARNLWDRAVTLMPRANQFWYKYTYMEETLGNVAGARQIFERWMEWQPEEQAWHAYINFELRYKEMDRAR 79          
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Match: UPI000719E0EE (crooked neck-like protein 1 n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719E0EE)

HSP 1 Score: 117 bits (293), Expect = 8.980e-29
Identity = 48/72 (66.67%), Postives = 60/72 (83.33%), Query Frame = 1
Query:   31 MRSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERWMEWEPEDNAWSAYVKFEMRQEE 246
            M++K  NH RN+WDRA+ +LPR +QFWYKY+YMEEMLGN A AR +FERWMEWEPE+ AW  Y+KFE+R +E
Sbjct:    1 MKNKQVNHTRNIWDRAITILPRANQFWYKYTYMEEMLGNVAGARQVFERWMEWEPEEQAWQTYIKFELRYKE 72          
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Match: G1RFP5_NOMLE (Uncharacterized protein n=1 Tax=Nomascus leucogenys TaxID=61853 RepID=G1RFP5_NOMLE)

HSP 1 Score: 115 bits (289), Expect = 3.510e-28
Identity = 48/69 (69.57%), Postives = 60/69 (86.96%), Query Frame = 1
Query:    1 TVWLRYAEFEMRSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERWMEWEPEDNA 207
            T+WL+YAE EM+++  NHARN+WDRA+  LPRV+QFWYKY+YMEEMLGN A AR +FERWMEW+PE+ A
Sbjct:  254 TLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWMEWQPEEQA 322          
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Match: A0A1B6HCS7_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6HCS7_9HEMI)

HSP 1 Score: 112 bits (279), Expect = 6.260e-28
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    7 WLRYAEFEMRSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERWMEWEPEDNA 207
            WL+Y E EMR++  NHARN+WDRAV +LPR +QFWYKY+YMEEMLGN A AR +FERWMEWEP++ A
Sbjct:   22 WLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLGNIAGARQVFERWMEWEPDEQA 88          
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Match: A0A0M3IR76_ASCLU (Uncharacterized protein n=1 Tax=Ascaris lumbricoides TaxID=6252 RepID=A0A0M3IR76_ASCLU)

HSP 1 Score: 109 bits (272), Expect = 1.200e-27
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 1
Query:   34 RSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERWMEWEPEDNAWSAYVKFEMRQEEPTKAR 261
            R+K  NHARN+WDRAV +LPR  QFW KYSYMEE++GN   AR +FERW+EWEP + AW  Y+ FE+R +E  +AR
Sbjct:   71 RNKQVNHARNIWDRAVTILPRATQFWLKYSYMEELIGNLPGARQVFERWIEWEPPEQAWQTYINFELRYKETDRAR 146          
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Match: A0A1S3F8C7_DIPOR (LOW QUALITY PROTEIN: crooked neck-like protein 1 n=1 Tax=Dipodomys ordii TaxID=10020 RepID=A0A1S3F8C7_DIPOR)

HSP 1 Score: 111 bits (278), Expect = 9.570e-27
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 1
Query:    4 VWLRYAEFEMRSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERWMEWEPEDNA 207
            +WL+YAE EM+++  NHARNVWDRA+  LPRV QFWYKY+YMEE+LGN A  R +FERWMEW+PE+ A
Sbjct:   56 LWLKYAEMEMKNRQANHARNVWDRAITALPRVSQFWYKYTYMEELLGNMAGPRQVFERWMEWQPEEQA 123          
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Match: A0A3P6FYJ1_BRAOL (Uncharacterized protein n=1 Tax=Brassica oleracea TaxID=3712 RepID=A0A3P6FYJ1_BRAOL)

HSP 1 Score: 104 bits (260), Expect = 1.010e-26
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1
Query:   31 MRSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERWMEWEPEDNAWSAYVKFEMRQEE 246
            M++KF N AR+VWDRAV LLPRVD  WYKYS+MEEMLGN A AR IFERWM W P+   W ++ KFE+R  E
Sbjct:    1 MKNKFVNSARHVWDRAVYLLPRVDLLWYKYSHMEEMLGNIAGARQIFERWMNWSPDQQGWLSFAKFELRYNE 72          
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Match: A0A834LRJ6_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834LRJ6_RHOSS)

HSP 1 Score: 106 bits (264), Expect = 7.700e-25
Identity = 45/69 (65.22%), Postives = 58/69 (84.06%), Query Frame = 1
Query:    1 TVWLRYAEFEMRSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERWMEWEPEDNA 207
            T++LRYA FEMR++F +HARNVWDRAV++ PRVDQ WYKY++MEEM+GN   AR +F+RWM WEP+  A
Sbjct:   67 TLFLRYAAFEMRNEFLSHARNVWDRAVSVFPRVDQLWYKYAHMEEMIGNFPGARRVFDRWMRWEPDQEA 135          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108132.662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2I4CWC1_9TELE1.610e-3466.67crooked neck-like protein 1 n=1 Tax=Austrofundulus... [more]
A0A2G9HXZ8_9LAMI1.520e-3064.56Cell cycle control protein (Crooked neck) n=1 Tax=... [more]
A0A183KDF0_9TREM8.710e-3067.95Uncharacterized protein n=1 Tax=Schistosoma curass... [more]
UPI000719E0EE8.980e-2966.67crooked neck-like protein 1 n=1 Tax=Priapulus caud... [more]
G1RFP5_NOMLE3.510e-2869.57Uncharacterized protein n=1 Tax=Nomascus leucogeny... [more]
A0A1B6HCS7_9HEMI6.260e-2870.15Uncharacterized protein (Fragment) n=1 Tax=Homalod... [more]
A0A0M3IR76_ASCLU1.200e-2760.53Uncharacterized protein n=1 Tax=Ascaris lumbricoid... [more]
A0A1S3F8C7_DIPOR9.570e-2767.65LOW QUALITY PROTEIN: crooked neck-like protein 1 n... [more]
A0A3P6FYJ1_BRAOL1.010e-2665.28Uncharacterized protein n=1 Tax=Brassica oleracea ... [more]
A0A834LRJ6_RHOSS7.700e-2565.22Uncharacterized protein n=1 Tax=Rhododendron simsi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108132contigH-elongata_contig108132:1412..2090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score100.9
Seed ortholog evalue2.8e-19
Seed eggNOG ortholog79684.XP_005365550.1
Preferred nameCRNKL1
KEGG koko:K12869
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0000974,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0008380,GO:0009719,GO:0009987,GO:0010033,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0021537,GO:0021543,GO:0021987,GO:0022607,GO:0022613,GO:0022618,GO:0030900,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034097,GO:0034622,GO:0034641,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048513,GO:0048731,GO:0048856,GO:0050896,GO:0051716,GO:0060322,GO:0065003,GO:0070013,GO:0070848,GO:0070887,GO:0071007,GO:0071010,GO:0071011,GO:0071012,GO:0071013,GO:0071014,GO:0071310,GO:0071345,GO:0071363,GO:0071495,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990089,GO:1990090,GO:1990416,GO:1990823,GO:1990830,GO:1990904
EggNOG free text desc.Crooked neck-like protein 1
EggNOG OGs35M0I@314146,38FN1@33154,3BEIY@33208,3CVXY@33213,3J9QT@40674,48780@7711,493Y2@7742,4PUMC@9989,KOG1915@1,KOG1915@2759
COG Functional cat.D
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108132.662.1prot_H-elongata_contig108132.662.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108132 1442..2090 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929609.607889-UTR-H-elongata_contig108132:1411..14411622929609.607889-UTR-H-elongata_contig108132:1411..1441Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108132 1412..1441 +
1691679090.3543754-UTR-H-elongata_contig108132:1411..14411691679090.3543754-UTR-H-elongata_contig108132:1411..1441Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108132 1412..1441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929609.8013372-CDS-H-elongata_contig108132:1441..15431622929609.8013372-CDS-H-elongata_contig108132:1441..1543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108132 1442..1543 +
1691679090.3649397-CDS-H-elongata_contig108132:1441..15431691679090.3649397-CDS-H-elongata_contig108132:1441..1543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108132 1442..1543 +
1622929609.8201077-CDS-H-elongata_contig108132:1958..20901622929609.8201077-CDS-H-elongata_contig108132:1958..2090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108132 1959..2090 +
1691679090.3727741-CDS-H-elongata_contig108132:1958..20901691679090.3727741-CDS-H-elongata_contig108132:1958..2090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108132 1959..2090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108132.662.1

>prot_H-elongata_contig108132.662.1 ID=prot_H-elongata_contig108132.662.1|Name=mRNA_H-elongata_contig108132.662.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MRSKFPNHARNVWDRAVALLPRVDQFWYKYSYMEEMLGNPAKARAIFERW
MEWEPEDNAWSAYVKFEMRQEEPTKAR*
back to top

mRNA from alignment at H-elongata_contig108132:1412..2090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108132.662.1 ID=mRNA_H-elongata_contig108132.662.1|Name=mRNA_H-elongata_contig108132.662.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=679bp|location=Sequence derived from alignment at H-elongata_contig108132:1412..2090+ (Himanthalia elongata Himel1 dioecious)
ACCGTCTGGCTGCGCTACGCGGAGTTCGAGATGCGGAGCAAGTTTCCCAA CCATGCTCGGAACGTGTGGGACCGCGCCGTAGCGCTGCTTCCACGGGTGG ACCAATTTTGGTACAAGTATAGCTACATGGAGGTGGGTGCGGATAGTACA GCGAAAGGTGCCTTCAGCGGATAGCACCTCCCGCAGAAGCCGCATATAAA GGTCGCAAAGTGTGTGTCTTCACGTCTATAACATTTTTCGTGTGGCCGGC CGTCCAAACGGGAGATGTGAAGGCTGTTTTTTCGCAGGCATGGACCTTCG TGCCACCATTGGGCCGCGGCCGTCGGAAACTAGCGTAGGCGGCTTGTTGC GTTTCTGTCTGGTTTGATGTGGATGACGTCGGCCGCAGCTGCCGCCGGAG AAGGAGACTTCTTACTCTGTTCAAGTTTAGCGTACGGGCTCTTGTGTGGT GTTTGTTGATTGAGTTGGACGCGGCTGTTGTGGCGCTCCACCGATCGTTC TGTTCATTTGGCATGATGATTGCCCTCGGTTCTGAAAAATGCGACAGGAG ATGCTGGGAAACCCCGCGAAGGCACGCGCAATCTTCGAGCGGTGGATGGA GTGGGAGCCGGAGGACAACGCCTGGAGCGCGTACGTGAAGTTCGAGATGC GTCAGGAAGAACCCACCAAAGCTCGGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig108132:1412..2090+

>mRNA_H-elongata_contig108132.662.1 ID=mRNA_H-elongata_contig108132.662.1|Name=mRNA_H-elongata_contig108132.662.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig108132:1412..2090+ (Himanthalia elongata Himel1 dioecious)
ATGCGGAGCAAGTTTCCCAACCATGCTCGGAACGTGTGGGACCGCGCCGT
AGCGCTGCTTCCACGGGTGGACCAATTTTGGTACAAGTATAGCTACATGG
AGATGCGGAGCAAGTTTCCCAACCATGCTCGGAACGTGTGGGACCGCGCC
GTAGCGCTGCTTCCACGGGTGGACCAATTTTGGTACAAGTATAGCTACAT
GGAGGAGATGCTGGGAAACCCCGCGAAGGCACGCGCAATCTTCGAGCGGT
GGATGGAGTGGGAGCCGGAGGACAACGCCTGGAGCGCGTACGTGAAGTTC
GAGATGCGTCAGGAAGAACCCACCAAAGCTCGGTGAGAGATGCTGGGAAA
CCCCGCGAAGGCACGCGCAATCTTCGAGCGGTGGATGGAGTGGGAGCCGG
AGGACAACGCCTGGAGCGCGTACGTGAAGTTCGAGATGCGTCAGGAAGAA
CCCACCAAAGCTCGGTGA
back to top