mRNA_H-elongata_contig108091.660.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108091.660.1
Unique NamemRNA_H-elongata_contig108091.660.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig108091.660.1 vs. uniprot
Match: D7FHC8_ECTSI (Coatomer subunit gamma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHC8_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 2.560e-47
Identity = 88/98 (89.80%), Postives = 95/98 (96.94%), Query Frame = 1 
Query:   10 QMFLSSVKPALKFGTMRTLSDVAAKYPMSIIKCNTDMEVLISDPNRSIATLAITTLLKTGSESSVDRLMKQISSFMNEIADEFKIVVVKAIRQVTWRF 303
            QMFL+SVKPALKFGTMRTLS+VAAKYPMSI+KCN+DMEVLISDPNRSIATLAITTLLKTGSE SVDRLMKQISSFMNEIADEFKIVVVKAIRQ+  ++
Sbjct:  182 QMFLTSVKPALKFGTMRTLSEVAAKYPMSILKCNSDMEVLISDPNRSIATLAITTLLKTGSEGSVDRLMKQISSFMNEIADEFKIVVVKAIRQLCLKY 279
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BLAST of mRNA_H-elongata_contig108091.660.1 vs. uniprot
Match: A0A836CC02_9STRA (Coatomer subunit gamma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC02_9STRA)

HSP 1 Score: 147 bits (372), Expect = 3.770e-39
Identity = 75/98 (76.53%), Postives = 86/98 (87.76%), Query Frame = 1 
Query:   10 QMFLSSVKPALKFGTMRTLSDVAAKYPMSIIKCNTDMEVLISDPNRSIATLAITTLLKTGSESSVDRLMKQISSFMNEIADEFKIVVVKAIRQVTWRF 303
            Q+FLSS KP L+FG MRTLSDVA  +PM+I+KCN +ME LISD NRSIATLAITTLLKTG+E SVDRLMKQIS+FMNEIADEFKI+VV AIRQ+  R+
Sbjct:  316 QLFLSSPKPTLRFGAMRTLSDVAGTHPMAIVKCNEEMETLISDANRSIATLAITTLLKTGTEGSVDRLMKQISTFMNEIADEFKIIVVHAIRQLCLRY 413
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BLAST of mRNA_H-elongata_contig108091.660.1 vs. uniprot
Match: A0A7S3YI27_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YI27_HETAK)

HSP 1 Score: 139 bits (349), Expect = 4.860e-37
Identity = 67/98 (68.37%), Postives = 85/98 (86.73%), Query Frame = 1 
Query:   10 QMFLSSVKPALKFGTMRTLSDVAAKYPMSIIKCNTDMEVLISDPNRSIATLAITTLLKTGSESSVDRLMKQISSFMNEIADEFKIVVVKAIRQVTWRF 303
            Q+FLSS KP L+F  MR LS+VA K+P+S++KCN DME LI+DPNRSIATLAITTLLKTG+E  VDRLMKQIS+FM EIADEF+++VV++IRQ+  ++
Sbjct:  153 QLFLSSPKPTLRFAAMRCLSEVALKHPISVVKCNEDMEALIADPNRSIATLAITTLLKTGTEGGVDRLMKQISAFMGEIADEFRVLVVRSIRQLCLKY 250
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BLAST of mRNA_H-elongata_contig108091.660.1 vs. uniprot
Match: A0A6U1MSQ3_9STRA (Coatomer subunit gamma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MSQ3_9STRA)

HSP 1 Score: 141 bits (356), Expect = 5.440e-37
Identity = 69/98 (70.41%), Postives = 85/98 (86.73%), Query Frame = 1 
Query:   10 QMFLSSVKPALKFGTMRTLSDVAAKYPMSIIKCNTDMEVLISDPNRSIATLAITTLLKTGSESSVDRLMKQISSFMNEIADEFKIVVVKAIRQVTWRF 303
            Q+FLSS KP L+F  MR LS+VA ++P+S++KCN DME LI+DPNRSIATLAITTLLKTGSE SVDRLMKQISSFM EIADEFK++V+ +IRQ+  ++
Sbjct:  320 QLFLSSPKPTLRFVAMRCLSEVAIRHPLSVVKCNEDMEALIADPNRSIATLAITTLLKTGSEGSVDRLMKQISSFMGEIADEFKVIVISSIRQLCLKY 417
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BLAST of mRNA_H-elongata_contig108091.660.1 vs. uniprot
Match: A0A7S2CJE5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CJE5_9STRA)

HSP 1 Score: 132 bits (333), Expect = 6.700e-36
Identity = 66/84 (78.57%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:   10 QMFLSSVKPALKFGTMRTLSDVAAKYPMSIIKCNTDMEVLISDPNRSIATLAITTLLKTGSESSVDRLMKQISSFMNEIADEFK 261
            Q+FLSS KP L++  MR LS+V+ ++PM+I+KCN DME LISDPNRSIATLAITTLLKTGSESSVDRLMKQI+SFMNEIADEFK
Sbjct:  224 QLFLSSPKPTLRYAAMRCLSEVSMRHPMAIVKCNDDMEALISDPNRSIATLAITTLLKTGSESSVDRLMKQINSFMNEIADEFK 307
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BLAST of mRNA_H-elongata_contig108091.660.1 vs. uniprot
Match: A0A452YGG4_AEGTS (Adaptin_N domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452YGG4_AEGTS)

HSP 1 Score: 131 bits (330), Expect = 7.810e-36
Identity = 66/98 (67.35%), Postives = 84/98 (85.71%), Query Frame = 1 
Query:   10 QMFLSSVKPALKFGTMRTLSDVAAKYPMSIIKCNTDMEVLISDPNRSIATLAITTLLKTGSESSVDRLMKQISSFMNEIADEFKIVVVKAIRQVTWRF 303
            Q+FLSS KP L+F  +RTL+ VA+ +P+++  CN DME LISD NRSIATLAITTLLKTG+ESSVDRLMKQ+++FM++IADEFKIVVV+AIR +  +F
Sbjct:   29 QLFLSSSKPVLRFAAVRTLNKVASTHPLAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQMTNFMSDIADEFKIVVVEAIRSLCLKF 126
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BLAST of mRNA_H-elongata_contig108091.660.1 vs. uniprot
Match: A0A803PHN8_CANSA (Adaptin_N domain-containing protein n=2 Tax=rosids TaxID=71275 RepID=A0A803PHN8_CANSA)

HSP 1 Score: 136 bits (342), Expect = 1.170e-35
Identity = 69/98 (70.41%), Postives = 84/98 (85.71%), Query Frame = 1 
Query:   10 QMFLSSVKPALKFGTMRTLSDVAAKYPMSIIKCNTDMEVLISDPNRSIATLAITTLLKTGSESSVDRLMKQISSFMNEIADEFKIVVVKAIRQVTWRF 303
            Q+FLSS KP L+F  +RTL+ VA  +PM++  CN DME LISDPNRSIATLAITTLLKTG+ESSVDRLMKQI++FM++IADEFKIVVV+AIR +  +F
Sbjct:  298 QLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDPNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKF 395
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BLAST of mRNA_H-elongata_contig108091.660.1 vs. uniprot
Match: S8FZ63_TOXGM (Coatomer gamma subunit n=1 Tax=Toxoplasma gondii (strain ATCC 50611 / Me49) TaxID=508771 RepID=S8FZ63_TOXGM)

HSP 1 Score: 130 bits (327), Expect = 4.710e-35
Identity = 64/101 (63.37%), Postives = 85/101 (84.16%), Query Frame = 1 
Query:    1 SIGQMFLSSVKPALKFGTMRTLSDVAAKYPMSIIKCNTDMEVLISDPNRSIATLAITTLLKTGSESSVDRLMKQISSFMNEIADEFKIVVVKAIRQVTWRF 303
            S+ Q+F SS KPAL+F  +RTL+ V+ K+P ++  CN D+E LI+D NRSIATLAITTLLKTG+ESSV+RLMKQIS+F+NEI+DEFK+VV++AIR +  R+
Sbjct:  155 SVLQLFCSSPKPALRFAAVRTLNKVSVKHPQAVTSCNVDLEQLITDQNRSIATLAITTLLKTGAESSVERLMKQISTFVNEISDEFKVVVIEAIRSLCSRY 255
[Close]
BLAST of mRNA_H-elongata_contig108091.660.1 vs. uniprot
Match: W9R165_9ROSA (Coatomer subunit gamma n=3 Tax=Rosales TaxID=3744 RepID=W9R165_9ROSA)

HSP 1 Score: 135 bits (341), Expect = 5.660e-35
Identity = 69/98 (70.41%), Postives = 84/98 (85.71%), Query Frame = 1 
Query:   10 QMFLSSVKPALKFGTMRTLSDVAAKYPMSIIKCNTDMEVLISDPNRSIATLAITTLLKTGSESSVDRLMKQISSFMNEIADEFKIVVVKAIRQVTWRF 303
            Q+FLSS KP L+F  +RTL+ VA  +PM++  CN D+E LISDPNRSIATLAITTLLKTG+ESSVDRLMKQI++FM+EIADEFKIVVV+AIR +  +F
Sbjct:  318 QLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDIESLISDPNRSIATLAITTLLKTGNESSVDRLMKQITNFMSEIADEFKIVVVEAIRSLCLKF 415
[Close]
BLAST of mRNA_H-elongata_contig108091.660.1 vs. uniprot
Match: A0A445E3K4_ARAHY (Uncharacterized protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A445E3K4_ARAHY)

HSP 1 Score: 135 bits (340), Expect = 8.040e-35
Identity = 69/98 (70.41%), Postives = 84/98 (85.71%), Query Frame = 1 
Query:   10 QMFLSSVKPALKFGTMRTLSDVAAKYPMSIIKCNTDMEVLISDPNRSIATLAITTLLKTGSESSVDRLMKQISSFMNEIADEFKIVVVKAIRQVTWRF 303
            Q+FLSS KP L+F  +RTL+ VA K+PM++  CN DME LISD NRSIATLAITTLLKTG+ESSVDRLMKQI++FM++IADEFKIVVV+AIR +  +F
Sbjct: 1179 QLFLSSSKPVLRFAAVRTLNKVAMKHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKF 1276
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108091.660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHC8_ECTSI2.560e-4789.80Coatomer subunit gamma n=2 Tax=Ectocarpus TaxID=28... [more]
A0A836CC02_9STRA3.770e-3976.53Coatomer subunit gamma n=1 Tax=Tribonema minus Tax... [more]
A0A7S3YI27_HETAK4.860e-3768.37Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6U1MSQ3_9STRA5.440e-3770.41Coatomer subunit gamma n=1 Tax=Fibrocapsa japonica... [more]
A0A7S2CJE5_9STRA6.700e-3678.57Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A452YGG4_AEGTS7.810e-3667.35Adaptin_N domain-containing protein n=1 Tax=Aegilo... [more]
A0A803PHN8_CANSA1.170e-3570.41Adaptin_N domain-containing protein n=2 Tax=rosids... [more]
S8FZ63_TOXGM4.710e-3563.37Coatomer gamma subunit n=1 Tax=Toxoplasma gondii (... [more]
W9R165_9ROSA5.660e-3570.41Coatomer subunit gamma n=3 Tax=Rosales TaxID=3744 ... [more]
A0A445E3K4_ARAHY8.040e-3570.41Uncharacterized protein n=1 Tax=Arachis hypogaea T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108091contigH-elongata_contig108091:759..1886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue6.6e-39
Seed eggNOG ortholog2880.D7FHC8
Preferred nameCOPG
KEGG koko:K17267
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0005829,GO:0005886,GO:0005911,GO:0009506,GO:0009507,GO:0009536,GO:0012505,GO:0012506,GO:0016020,GO:0030054,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0048475,GO:0055044,GO:0071944,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5240@1,KOG1078@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size291
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108091.660.1prot_H-elongata_contig108091.660.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108091 759..1874 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929609.37129-CDS-H-elongata_contig108091:758..9151622929609.37129-CDS-H-elongata_contig108091:758..915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108091 759..915 -
1691679090.306806-CDS-H-elongata_contig108091:758..9151691679090.306806-CDS-H-elongata_contig108091:758..915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108091 759..915 -
1622929609.3870425-CDS-H-elongata_contig108091:1740..18741622929609.3870425-CDS-H-elongata_contig108091:1740..1874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108091 1741..1874 -
1691679090.3187122-CDS-H-elongata_contig108091:1740..18741691679090.3187122-CDS-H-elongata_contig108091:1740..1874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108091 1741..1874 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929609.3982306-UTR-H-elongata_contig108091:1874..18861622929609.3982306-UTR-H-elongata_contig108091:1874..1886Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108091 1875..1886 -
1691679090.3294656-UTR-H-elongata_contig108091:1874..18861691679090.3294656-UTR-H-elongata_contig108091:1874..1886Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108091 1875..1886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108091.660.1

>prot_H-elongata_contig108091.660.1 ID=prot_H-elongata_contig108091.660.1|Name=mRNA_H-elongata_contig108091.660.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MFLSSVKPALKFGTMRTLSDVAAKYPMSIIKCNTDMEVLISDPNRSIATL
AITTLLKTGSESSVDRLMKQISSFMNEIADEFKIVVVKAIRQVTWRF
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mRNA from alignment at H-elongata_contig108091:759..1886-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108091.660.1 ID=mRNA_H-elongata_contig108091.660.1|Name=mRNA_H-elongata_contig108091.660.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1128bp|location=Sequence derived from alignment at H-elongata_contig108091:759..1886- (Himanthalia elongata Himel1 dioecious)
TCTATTGGGCAGATGTTCCTCTCATCCGTCAAGCCCGCACTCAAGTTTGG
TACCATGCGAACCCTCAGCGACGTGGCCGCAAAGTATCCCATGAGCATCA
TCAAGTGCAACACCGACATGGAGGTCCTCATCTCGGACCCTAACAGGTGC
GCCAATCCCATTTCATCCCATCTCGTCCCATTTCCTTGAGGAGATAAAGT
TTCGCTGCTAACACAACGGAATATGTAATGAGTTGAGCCTCGATTGTCGT
GTCCCGCCCCCCACCTCCCCTATACCGGGTTAAAATTCATCGAAGGGACG
GGGAGTTGAGGAAGTATCCCCGGGTTGGGGAAGGGATCGCATGTCGTCCC
ATCCCATGTCGTCCCACTCCTCGGGTTCGGGAAAACAGCACTCATTGCAT
TGTAGGGATTTTCGGTTAGTGTAATCCATATAGCAGAGTATCGTCATCAC
ATGTCGCAGAGTATGAATGAGCCAAATTATTAGTGTAATTCATGGATGTT
TAGAAAAAAAGTGGTATCTAAGAGGTGGGGGCGTACTTAATTTTTTATTG
TTAGACCAATTTACCACGCGTCCTCGGAAGAACGAATGTATCATTGCTCC
TACATCCGGGGGGGGGGTTATCTAGGGGTCTTGATGGGGTGGTTTGGATG
TTTTAGTTGTTTGACCAATTTTCCACCCGACCTCGGGAGGGTGAGGGGAG
ATTTGCTCCTGTACTTGGTATTAGTATCGATAAATATATTGGCACCATGA
CCGCGGAAAAGGCGTTATCGAAGGGGGGACGTACTAATTTTTGGATACCT
TACTGTTAGACGATTGACATTGCTCCTACCTGATAGGCCGTCGATGTACC
ATTACTTATCCTCGGCAGGATACACACCGTTTTTCGCCGTTTCGGTGAAA
CCGCAACATGGAAAAATGCAAATAAGGACTTACCATAGAAACCCCTTCAC
GTATTCTGGTTCACTCGTCAGGTCTATTGCTACCTTGGCGATAACGACAT
TGCTCAAGACAGGCTCGGAGAGCTCTGTGGATCGTCTCATGAAGCAGATC
TCGTCCTTCATGAACGAGATCGCGGACGAGTTCAAGATCGTGGTGGTGAA
GGCTATTCGTCAGGTGACTTGGAGATTT
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Coding sequence (CDS) from alignment at H-elongata_contig108091:759..1886-

>mRNA_H-elongata_contig108091.660.1 ID=mRNA_H-elongata_contig108091.660.1|Name=mRNA_H-elongata_contig108091.660.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig108091:759..1886- (Himanthalia elongata Himel1 dioecious)
ATGTTCCTCTCATCCGTCAAGCCCGCACTCAAGTTTGGTACCATGCGAAC
CCTCAGCGACGTGGCCGCAAAGTATCCCATGAGCATCATCAAGTGCAACA
CCGACATGGAGGTCCTCATCTCGGACCCTAACAGATGTTCCTCTCATCCG
TCAAGCCCGCACTCAAGTTTGGTACCATGCGAACCCTCAGCGACGTGGCC
GCAAAGTATCCCATGAGCATCATCAAGTGCAACACCGACATGGAGGTCCT
CATCTCGGACCCTAACAGGTCTATTGCTACCTTGGCGATAACGACATTGC
TCAAGACAGGCTCGGAGAGCTCTGTGGATCGTCTCATGAAGCAGATCTCG
TCCTTCATGAACGAGATCGCGGACGAGTTCAAGATCGTGGTGGTGAAGGC
TATTCGTCAGGTGACTTGGAGATTTGTCTATTGCTACCTTGGCGATAACG
ACATTGCTCAAGACAGGCTCGGAGAGCTCTGTGGATCGTCTCATGAAGCA
GATCTCGTCCTTCATGAACGAGATCGCGGACGAGTTCAAGATCGTGGTGG
TGAAGGCTATTCGTCAGGTGACTTGGAGATTT
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