mRNA_H-elongata_contig10807.659.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10807.659.1
Unique NamemRNA_H-elongata_contig10807.659.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10807.659.1 vs. uniprot
Match: A0A6H5JAC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAC5_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.410e-24
Identity = 61/116 (52.59%), Postives = 68/116 (58.62%), Query Frame = 1 
Query:   67 RPRKAFARHVIERLNTNQRISKRDLMSADLSVVVSKPTKKGSPVS-----------SVDATEGDGDILPGEADAASTDPKTWLVLYCGANLIVEKAVASTCDKLKVAWRKEYFSSW 381
            R R    + V+ RLNTNQRISKRDLMSADLSVV  K +  G P S           S D   G           A+ DP+TWLVLYCGAN  VEKAV + CD L V WRKEYFS+W
Sbjct:  216 RVRTDVRKKVLARLNTNQRISKRDLMSADLSVVPGKASPPGVPRSGRVTAAASDMGSPDGVSGGXXXXXXXXXXAAWDPRTWLVLYCGANAKVEKAVETACDDLGVTWRKEYFSAW 331
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BLAST of mRNA_H-elongata_contig10807.659.1 vs. uniprot
Match: D7G8C8_ECTSI (Putative respiratory burst oxidase protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C8_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.500e-22
Identity = 60/128 (46.88%), Postives = 73/128 (57.03%), Query Frame = 1 
Query:    4 EWADKSHRSSAPVTLSGNPGHRPRKAFARHVIERLNTNQRISKRDLMSADLSVVVSK--PTKKGSPVSSVDATEGDGDILPGEADAASTDPKTWLVLYCGANLIVEKAVASTCDKLKVAWRKEYFSSW 381
            +WA     S  P   S +P  +P     R ++ RLNT QRISKRDLM ADL+VV S    +KK S VS V   +     +P        D K+WLVLYCGAN  VE+AV +  + L VAWRKEYFS W
Sbjct:  796 QWAPPVD-SRPPAPSSSSPRQQPTAGGLRQMLTRLNTGQRISKRDLMEADLTVVDSSLAKSKKPSSVSGVTGFDMPNSDIPNNGSVGCVDEKSWLVLYCGANGKVEQAVQTASEGLNVAWRKEYFSKW 922
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BLAST of mRNA_H-elongata_contig10807.659.1 vs. uniprot
Match: D7G8C4_ECTSI (Putative respiratory burst oxidase homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C4_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 2.280e-21
Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:   94 VIERLNTNQRISKRDLMSADLSVVVSKPTKKGSP----VSSVDATEGDGDILPGE---ADAASTDPKTWLVLYCGANLIVEKAVASTCDKLKVAWRKEYFSSW 381
            V+ RLNTNQRISKRDLMSADLSVV  K +    P    V++  +  G  D + G    A  A+ D +TWLVLYCGAN  VE+AV + CD L V WRKEYFS+W
Sbjct:  549 VLARLNTNQRISKRDLMSADLSVVPGKASPPRVPRSGRVTAAASDMGSPDGVGGXXXXASGAAWDARTWLVLYCGANAKVEEAVETACDDLCVTWRKEYFSAW 651
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BLAST of mRNA_H-elongata_contig10807.659.1 vs. uniprot
Match: A0A6H5JHI2_9PHAE (FAD-binding FR-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI2_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 3.530e-17
Identity = 49/100 (49.00%), Postives = 58/100 (58.00%), Query Frame = 1 
Query:   88 RHVIERLNTNQRISKRDLMSADLSVVVSK--PTKKGSPVSSVDATEGDGDILPGEADAASTDPKTWLVLYCGANLIVEKAVASTCDKLKVAWRKEYFSSW 381
            R ++ RLNT QRISKRDLM ADL+VV      +KK S  S V   +               D K+WLVLYCGAN  VE+AV +  + L V WRKEYFS W
Sbjct:  838 RQMLTRLNTGQRISKRDLMEADLTVVNCSLAKSKKPSSTSGVSGFDMPNSDTANNGSVGCVDEKSWLVLYCGANGKVEQAVQTASEGLNVTWRKEYFSKW 937
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10807.659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JAC5_9PHAE1.410e-2452.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8C8_ECTSI1.500e-2246.88Putative respiratory burst oxidase protein n=1 Tax... [more]
D7G8C4_ECTSI2.280e-2155.34Putative respiratory burst oxidase homolog n=1 Tax... [more]
A0A6H5JHI2_9PHAE3.530e-1749.00FAD-binding FR-type domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10807contigH-elongata_contig10807:2847..4798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue2.2e-11
Seed eggNOG ortholog2880.D7G8C4
EggNOG free text desc.oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
EggNOG OGsKOG0039@1,KOG0039@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size480
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10807.659.1prot_H-elongata_contig10807.659.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10807 3191..4702 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929609.2443821-UTR-H-elongata_contig10807:2846..29241622929609.2443821-UTR-H-elongata_contig10807:2846..2924Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10807 2847..2924 +
1691679090.2456825-UTR-H-elongata_contig10807:2846..29241691679090.2456825-UTR-H-elongata_contig10807:2846..2924Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10807 2847..2924 +
1622929609.2578373-UTR-H-elongata_contig10807:3127..31901622929609.2578373-UTR-H-elongata_contig10807:3127..3190Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10807 3128..3190 +
1691679090.2634084-UTR-H-elongata_contig10807:3127..31901691679090.2634084-UTR-H-elongata_contig10807:3127..3190Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10807 3128..3190 +
1622929609.330406-UTR-H-elongata_contig10807:4702..47981622929609.330406-UTR-H-elongata_contig10807:4702..4798Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10807 4703..4798 +
1691679090.2953575-UTR-H-elongata_contig10807:4702..47981691679090.2953575-UTR-H-elongata_contig10807:4702..4798Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10807 4703..4798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929609.2723124-CDS-H-elongata_contig10807:3190..32351622929609.2723124-CDS-H-elongata_contig10807:3190..3235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10807 3191..3235 +
1691679090.2725267-CDS-H-elongata_contig10807:3190..32351691679090.2725267-CDS-H-elongata_contig10807:3190..3235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10807 3191..3235 +
1622929609.2983038-CDS-H-elongata_contig10807:3601..37331622929609.2983038-CDS-H-elongata_contig10807:3601..3733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10807 3602..3733 +
1691679090.2805579-CDS-H-elongata_contig10807:3601..37331691679090.2805579-CDS-H-elongata_contig10807:3601..3733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10807 3602..3733 +
1622929609.317773-CDS-H-elongata_contig10807:4636..47021622929609.317773-CDS-H-elongata_contig10807:4636..4702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10807 4637..4702 +
1691679090.2877789-CDS-H-elongata_contig10807:4636..47021691679090.2877789-CDS-H-elongata_contig10807:4636..4702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10807 4637..4702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10807.659.1

>prot_H-elongata_contig10807.659.1 ID=prot_H-elongata_contig10807.659.1|Name=mRNA_H-elongata_contig10807.659.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MSADLSVVVSKPTKKGSPVSSVDATEGDGDILPGEADAASTDPKTWLVLY
CGANLIVEKAVASTCDKLKVAWRKEYFSSW*
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mRNA from alignment at H-elongata_contig10807:2847..4798+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10807.659.1 ID=mRNA_H-elongata_contig10807.659.1|Name=mRNA_H-elongata_contig10807.659.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1952bp|location=Sequence derived from alignment at H-elongata_contig10807:2847..4798+ (Himanthalia elongata Himel1 dioecious)
CCCGAGTGGGCCGATAAATCCCATAGATCATCAGCGCCAGTGACCTTGAG
TGGAAACCCCGGTCACCGTCCTCGAAAGGTGACATTTTTTCGTATACATA
CCTCTGTACTGAGCGATCGGGTTGCCATGATCTACGCTCGTGTGAGTTTC
GTCATTTCTGCGCGGTCATCGTAGTCGATTCTTCGGGAAAAATTGCGAGT
CTGTAGCTTTTATGGCGCGTCGCACCACTTAAGCTTTCGATTATAGTTTA
GACCCCCCTTTGTCTCCTCTGCTCGTCGCAGGCCTTCGCTAGGCATGTGA
TCGAACGCCTCAACACAAATCAGCGCATCTCCAAGAGGGATCTCATGAGC
GCAGACTTGTCCGTCGTCGTCTCCAAACCCACAAAGAAGGTACTATTACC
ACACTCACAAACAGCAGTCGCAAACTTACCCTGCACCCATAATTAGCTTT
GTATAGAACTGTGTTGAAAAACGAACGCATCTTATCCAAAATTAACAAGG
CTTCGTAAACGGACGCATGCACGCAGCACGCACTATTGACATATGTGGAA
TTCCAACTTCTCGATAAACTCATGCCGCGGTAAATCTCAGCAAGATTTCC
CTCCACCGCTTTACCTTTTCTTGTCCCCATTATTTAGCTCCTAGAACACG
AATTCCTGTGTTGGGTGCACAATTTGCATCACGCGGTATGTAGCCCTTGC
TTCGTGATATGCTCCCCTTCCTACCACTAACATAGCAATATACCTTGGCG
CGTAGGGATCCCCTGTCTCGAGCGTGGATGCGACCGAAGGCGACGGAGAC
ATTCTACCTGGGGAAGCTGATGCTGCATCAACCGACCCTAAAACGTGGCT
GGTCCTCTACTGCGGAGCTAACTTGATAGTCGAAAAGGTGAGGAACACAG
GATCGACGGCGAGGAGCTAAAATGAGCTAAGCTCTAGCCTAAGAATTCCT
GCCTGGTGGTGCTGTTAGTTTCAGAATGTTACGAAGCCGCTTTTGAATCG
AGGGATTCAGATATGAGGATCCGTGCCGCTATACTCCGAGATTTAAAAAT
GTTTGGGTTTGGAGAGAGATATTTAATAAAACTATTAGATGTAGGTCACT
AGCGTTTCTAAGTACTTTTCGGTAGGGTGTTTTATTCTTTGCCGGGGCCG
CACGGTGGCAATGAGGCGGCTGCCCCACCCCCTGAAGCTGCGGACCCATA
AGGATTGGGAAAACGATGCGTGATATTTACATATCAGAGTCAGGACCAGC
CGAATTTCATTGCCTCCTGGTTGTGGCCAGCTGAAAATAAAATAAAATAT
ATGCTCCCCGCCCTCGTCGTACCTGATAATTTTGTCTCGCGGGACGGGTT
CGGCAGTCCCGTCACGCGTCAGCCTGCCCATTCTCTTAACCCTGGCTAAA
TCTGCTGCGTACTCCCGGGATCCTCTCGATCCTCTTGCTTTCCGCGACGG
CATCCATCTCTACCGTCAACCGTCATCGGACTAATCCCGAGTTCGTCACG
TCACATAATTGTGTACCGATAGCGTTTACCACCGAGAATCCGCTGGCACT
GAGCCAGCAGTTCGAAAGATAGATTAAGTAACGAATGCAGCCTATGCAGG
TAACCCCATGGACCAATTAGTTTAGGCCGGCGATGCAATGATGTGAATTG
GTACCGTCTCCGAAACAAACTCACCTCGTACTGGAGCGGTGCATCCGCAT
ATGAACTATATAAGTATATCTATGTCGCTCAGGCTCGCTCCCTACCCCAT
GCCGGTTCCTTTTTTTTGTTTTCCATTCTCGTGGTGCAAGGCCGTGGCCT
CAACATGCGACAAGCTGAAGGTTGCCTGGAGGAAGGAATATTTCTCCTCG
TGGTAATTATTTATAATTTCACCAAAAGGGAGGGGCGGGTAGCAACAATG
CTGCTCGAGTACCATTGTTCTATCTACTAGATCAGAACTAAACGTATGTG
GT
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Coding sequence (CDS) from alignment at H-elongata_contig10807:2847..4798+

>mRNA_H-elongata_contig10807.659.1 ID=mRNA_H-elongata_contig10807.659.1|Name=mRNA_H-elongata_contig10807.659.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig10807:2847..4798+ (Himanthalia elongata Himel1 dioecious)
ATGAGCGCAGACTTGTCCGTCGTCGTCTCCAAACCCACAAAGAAGATGAG
CGCAGACTTGTCCGTCGTCGTCTCCAAACCCACAAAGAAGGGATCCCCTG
TCTCGAGCGTGGATGCGACCGAAGGCGACGGAGACATTCTACCTGGGGAA
GCTGATGCTGCATCAACCGACCCTAAAACGTGGCTGGTCCTCTACTGCGG
AGCTAACTTGATAGTCGAAAAGGGATCCCCTGTCTCGAGCGTGGATGCGA
CCGAAGGCGACGGAGACATTCTACCTGGGGAAGCTGATGCTGCATCAACC
GACCCTAAAACGTGGCTGGTCCTCTACTGCGGAGCTAACTTGATAGTCGA
AAAGGCCGTGGCCTCAACATGCGACAAGCTGAAGGTTGCCTGGAGGAAGG
AATATTTCTCCTCGTGGTAAGCCGTGGCCTCAACATGCGACAAGCTGAAG
GTTGCCTGGAGGAAGGAATATTTCTCCTCGTGGTAA
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