mRNA_H-elongata_contig10806.658.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10806.658.1
Unique NamemRNA_H-elongata_contig10806.658.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig10806.658.1 vs. uniprot
Match: A0A6H5JZH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH5_9PHAE)

HSP 1 Score: 473 bits (1217), Expect = 2.960e-143
Identity = 430/1136 (37.85%), Postives = 561/1136 (49.38%), Query Frame = 1 
Query:   16 IDALEAAVSNSLDHWEPLQRGHVTLMEKLEEQTLRHDGMLKTFERDLTALGDIPLHPSLA----------WNPEEDAVVVAAAEEERGERSPLASGPTDAGWEAGATPPSSGGRGRNSQGSISRDPL--SLKQQQE-----AGRRVK-LLDCVPVEREHKLLESCRTSQRRFGQEGKAVAQKYAAVKRGIEEQRADPVSRDGKVNDLLRQAKKVCEEQESLTAELRKNYSESFQLASKETWADDQEKQDAIRRMTELMATQENIVPTMRDNDLRVRATVVEIARAKAAMSHTLRRRLREVSRLQTDIGKIQKHQELVRITKKKKAKQFEHLGKVAKMPAAYKAFLREVVRRRRYHQVAEGKIEEFCGAMSVLRSAEMSARESFRETHLGILPPVFVEMAPGLRNMSPVFTPPRVTPLQPGELPEI--ELVELEDVIETRKEPQSEEQSAPTATAPDVSAIVAVAGVGSVELHVETVQASVGATT---------------------------AVKEAA----------------AVATQTEE----AIPEGGCDKGKSSARDHLNTAQGGNQGGVVEENQPAPEEAMGVENDGAGDRKGKDEAVKATVDREETHPAQEEKGTQSTL--LESENARLAAELAEARARLEELEHEARARAAPGVTSAATPAKRAEEACVNLSAGDGDEAMTSPVDAVGARDEQDNTAETEASTMRNAATDVVEGGDVATVLRRRGRSGAKGSSDVTAGGE--RRRRSVSDEVV-GDGRDSAKPAS------------DRRGSGLSR---EATQKQLIAYRTGLSMLVKLCNQLVAXXXXXXXXXXXXXXXXXXXXATRADAGINQVASTGPRRAPEGTRPGXXXXXXXXXXXXXMVTNDEPQADAATTTGPTDVSAVAKSEGVSEDAA------------------AAARRPQGLVSG-DTDTXXXNSKVAVEGRRGXXXXXXXXXXXXXXXAATPLKTSDDPSPQEASPVETTLVDGTSGADEGARAGPREAAVVRSASRGVDKIKRAAEHVAAHIRLSHLLAFEAMASVPRISMCSFSVQDIALFLPTMVSTPEGS-GGTVFLAFHVNCPNRYLSEESIGIARQGLGSSPAFILGRIIMIEQHVATE 3102
            + AL+AAVSNSLDHW+PLQR +  L EKL EQ LRH+ ML+TFE+D+  LG IP+HP+LA                              S L SG  D  +     PP     G    G + R+    S++Q +E     +GR  K LLDC+PVERE +LLESCRTSQRRF QE + VAQK+A +++GI EQR DPV+ +  V +LL +A+++C +QES  AEL  NY ESF LA KE+  DD EKQ+AI R+T+L+   E +VP M+DND +  A  +EIA AKA++   LR+RLREVSRLQTDIGKIQKHQELV +   +K +QFEHLGKVA+MPAAY AFLREV+R+RR+H+  E  + +FC +M+ LRS+E+ +R+ F +THLG LPPVF+EMAPGLRNM P F P  +TPL+PGELPE+  +    ++ ++   E  S+E     + A  V+                                                     A   AA                AV TQTE        EG   +G   +    +   GG       E+         VE  G GD         A V+  E   A +E G   ++  LE+ENARLA ELA+AR+RLEEL     A  AP + SA + A+RA                  P  + G                       VEG D A + R               GGE  R RRS SD VV G GR  +  A             + RG+G  R   + T+ QL AYR GL+MLVKL +Q                     XX      G  +  + G  RA    R                  +  P +D  T     D  A A   G   DAA                  A    P   +S  + D     +K AV                    + +    ++  SP+ A+    +   G +  +    AG    A    +  GV++I+RAA++VA H++ +H     A+A+VPRISMCSFSVQDIALFLPTMV +P+GS GG VFLAFHVNCPNRYLSEESI  AR+ LG+SPA+ILGRII++EQHVA+E
Sbjct:  291 VMALDAAVSNSLDHWDPLQRAYNGLKEKLGEQALRHEKMLETFEQDVATLGTIPVHPALAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRLGSGRID--YSISEEPPLDPTAG----GGLMREKRLPSVRQGEEEEVGGSGRGGKTLLDCIPVEREQRLLESCRTSQRRFQQEAENVAQKFATIEKGILEQRGDPVTVNDAVQELLERARRLCRDQESKRAELEANYLESFNLA-KESGTDDAEKQNAINRLTQLILESEKLVPMMKDNDQQTMAIAMEIATAKASLLTNLRQRLREVSRLQTDIGKIQKHQELVGMAWGQKEEQFEHLGKVARMPAAYNAFLREVLRQRRFHEDFEATVSDFCNSMAALRSSEIVSRQEFIQTHLGNLPPVFLEMAPGLRNMPPTFNPGPITPLRPGELPEVYPDPAAADEEVDGGGESASKEAGGAGSVAGSVTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAXXXXXXXXXXXXXXXXAVGTQTERDWLRPTNEGRSVEGDGGSGGTDDDVGGGRADAAAAES---------VEARGEGD---------APVESVEERAAGQESGVARSISALEAENARLADELAKARSRLEELG--TAAAGAPALESAPSEAERA---------------AIEPDRSPGTTAXXXXXXXXXXXXXXVVVPGAVEGEDPAPMPR-------------GVGGEFARPRRSYSDVVVSGSGRRESAIAXXXXXXXXXXXXXEVRGTGARRGSSKETKNQLAAYRAGLTMLVKLTDQHKLADQQRGGAAVGVASASAAXXXXXVQPGAMEDPAVG-TRATVTARTAAAEDPASPSSPTDSEGHPSPGSDRPTPATAVDGQATAGGGGDVGDAASPDVKEASERESTTVPDRAQEAHPAAAISAVEVDKDHATAKPAVAEATAPPEDRQGGARPAGEDSCSSPDHNEAASPERAATTPASTATGGTAVE---TAGGGLVARPSGSLGGVERIRRAADYVATHLQYNH-----ALAAVPRISMCSFSVQDIALFLPTMVGSPDGSSGGPVFLAFHVNCPNRYLSEESINNARETLGASPAYILGRIILVEQHVASE 1362
[Close]
BLAST of mRNA_H-elongata_contig10806.658.1 vs. uniprot
Match: D7FIX1_ECTSI (Autophagy-related protein 11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX1_ECTSI)

HSP 1 Score: 433 bits (1114), Expect = 7.230e-130
Identity = 427/1189 (35.91%), Postives = 550/1189 (46.26%), Query Frame = 1 
Query:   16 IDALEAAVSNSLDHWEPLQRGHVTLMEKLEEQTLRHDGMLKTFERDLTALGDIPLHPSLA----------WNPEEDAVVVAAAEEERGERSPLASGPTD--AGWEAGATPPSSGGRGRNSQGSISRDPLSLKQQQEAGRRVK---------LLDCVPVEREHKLLESCRTSQRRFGQEGKAVAQKYAAVKRGIEEQRADPVSRDGKVNDLLRQAKKVCEEQESLTAELRKNYSESFQLASKETWADDQEKQDAIRRMTELMATQENIVPTMRDNDLRVRATVVEIARAKAAMSHTLRRRLREVSRLQTDIGKIQKHQELVRITKKKKAKQFEHLGKVAKMPAAYKAFLREVVRRRRYHQVAEGKIEEFCGAMSVLRSAEMSARESFRETHLGILPPVFVEMAPGLRNMSPVFTPPRVTPLQPGELPEIELVELEDVIETRKEPQSEEQSAPTATAPDVSAIVAVAGVGSVELHVETVQASVGATTAVKE------AAAVATQTEEAIPEG----------------------------------------------------------------------------------GCDKGKSSARDHL-------NTAQGGNQGGVVEENQPAPEE---AMGVENDGAGDRKGKDEAVKATVDREETHPAQEEKGTQSTL--LESENARLAAELAEARARLEELEHEARARAAPGVTSAATPAKRAEEACVNLSAGDGDEAMTSPVDAVGARDEQDNTAETEASTMRNAATDVVEGGDVATVLRRRGRSGAKGSSDVTAGGE--RRRRSVSDEVV-GDGRDSAKPAS------------DRRGSGLSR---EATQKQLIAYRTGLSMLVKLCNQ--------------LVAXXXXXXXXXXXXXXXXXXXXATRADAGINQVASTGPRRAPEGTRPGXXXXXXXXXXXXXMVTNDEPQADAATTTGPTDVSAVAK---SEGVSEDAAAAARRPQGLVSGDTDTXXXNSKVAVEGRRGXXXXXXXXXXXXXXXAATPLKTSDDPSPQEASPVE---TTLVDGTSGADEGARAGPREAAVVRSASRGVDKIKRAAEHVAAHIRLSHLLAFEAMASVPRISMCSFSVQDIALFLPTMVSTPEGS-GGTVFLAFHVNCPNRYLSEESIGIARQGLGSSPAFILGRIIMIEQHVATE 3102
            + AL+AAVSNSLDHW+PLQR +  L EKL EQ LRH+ ML+TF++D+  LG IPLHP+LA                              S L SG  D     E    P + GG  R  +       L   QQ E               LLDC+PVERE +LLESCRTSQRRF QE + VAQKYAA++ GI EQR DPV+ +  V +LL +A+++C +QES  AEL  NY ESF LA KE   DD EKQ+AI R+T+L+   E +VP M+DND +  A V+EIARAKA++   LRRRLREVSRLQTDIGKI+KHQELV +   +K +QFEHLGKVA+MPAAY AFLREV+R+RR+HQ  E  + +FC +++ LRS+EM +R+ F + HLG LPP F+EMAPGLRNM P F P  +TPL+PGELPE+      D     ++     +SA             VAG G+  +  E   A V A T          +AA++TQT  A  +G                                                                                  G   G  + RD L       +    G +GG+ ++      +   A  VE  G G+         A V R E   A  E     ++  LE+ENARL+ ELA+AR+RLEEL       AA G  + A PA  +  +   L+A + D+   +                             VEG D A + R               GGE  R RRS SD VV G GR  + PA             + RG+G  R   + T+ QL AYR GL+MLVKL +Q              + A                     TRA A    VA+  P        P                T  + QA A    G  DV   A     E    ++     R Q        T     K     +                       +S  P  +EA   E   TT V   +G      AG    A   ++  GV++I+RAA++VA H++ +H     A+A+VPRISMCSFSVQ           +PEGS GG V L FHVN PNRYLSE+SI  AR+ LG+SPA+ILGRII++EQHVA+E
Sbjct:   77 VKALDAAVSNSLDHWDPLQRAYSGLKEKLGEQALRHEKMLETFDQDVATLGTIPLHPALAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLGSGRIDYSISEEPPLDPTAGGGLMRGGR-------LPSVQQGEXXXXXXXXXXXGGKTLLDCIPVEREQRLLESCRTSQRRFQQEAENVAQKYAAIENGILEQRGDPVTANDAVQELLERARRLCRDQESKRAELEANYLESFNLA-KENGTDDAEKQNAINRLTKLILESEKLVPMMKDNDQQTMAIVMEIARAKASLLTNLRRRLREVSRLQTDIGKIRKHQELVGMAWGQKEEQFEHLGKVARMPAAYNAFLREVLRQRRFHQDFEATVSDFCTSVAALRSSEMVSRQEFIQAHLGNLPPAFLEMAPGLRNMPPTFNPGPITPLRPGELPEV----YPDPAAAGEDEDGGGESAIKEAG--------VAGSGARSVTPEAAAAVVXADTXXXXXXXXTGSAAISTQTTAAAVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGAAVGTQTERDGLRPRNEGESVVGDGGRGGIDDDVSRGTADVAAAESVEARGEGN---------APVKRVEERTAGPEVAVDRSISALEAENARLSEELAKARSRLEEL-----GTAAAGEPAGA-PALESTPSAAELAAIEPDQRPGTTAXXXXXXXXXXXXXXXXXXXXVAVVPGAVEGEDPAPMPR-------------GVGGEFARPRRSYSDVVVSGTGRRESAPAXXXXXXXXXXXXXEVRGTGGRRGSSKETKNQLAAYRAGLTMLVKLTDQHKLADQQRGGAAVGVAAAAAAEVASAVQPAMIEDPAGGTRATATARTVAAEDP------ASPSSDYHPSPGSDRPSPTTAVDGQATAG---GGGDVGGAASPDAKEASERESTTVPERAQETHPAPAITAVKVDKDHATAKPAAAEATAPGEDRQGGARPAGEDSSSSPDHKEAVSPEREATTAVSTATGGTAVETAGGGLVARPSASLGGVERIRRAADYVATHLQYNH-----ALAAVPRISMCSFSVQG---------GSPEGSSGGPVVLGFHVNWPNRYLSEDSINNAREALGASPAYILGRIILVEQHVASE 1194
[Close]
BLAST of mRNA_H-elongata_contig10806.658.1 vs. uniprot
Match: A0A7S1D9L6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D9L6_CYCTE)

HSP 1 Score: 84.3 bits (207), Expect = 7.370e-13
Identity = 103/418 (24.64%), Postives = 174/418 (41.63%), Query Frame = 1 
Query:   22 ALEAAVSNSLDHWEPLQRGHVTLMEKLEEQTLRHDGMLKTFERDLTALGDIPLHPSLAWNPEEDAVVVAAAEEERGERSPLASGPTDAGWEAGATPPSSGGRGRNSQGSISRDPLSLKQQQEAGRRVK-LLDCVPVEREHKLLESCRTSQRR-----------FGQEGKAVAQKYAAVKRGIEEQRADPVSRDGKVNDLLRQAKKVCEEQESLTAELRKNYSESFQLASKETWADDQEKQDAIRRMTELMATQENIVPTMRDNDLRVRATVVEIARAKAAMSHTLRRRLREVSRLQTDIGKIQKHQELVRITKKKKAKQFEHLGKVAKMPAAYKAFLREVVRRRRYHQVAEGKIEEFCGAMSVLRSAEMSARESFRETHLGILPPVFVEM-APGLRNMSPVFTPPRVTPLQPGELPEI 1236
            AL AAVSN   H+    R       + + +T  H  +L+ FE  L  LG IPLHP+L        V VA A                                                   AGR ++ LLD VPVE E      C+T+ +R           FGQ G   +++  A +    E     + ++     +    +K+ + Q     +L  ++ E  ++       D  +   AI  + +   +  ++VP+M+ +D  ++  +  +A +K      ++ RLREVS+ Q+ I ++     +++   K++ +   HL  VA++P +Y+ FL E+ RRR Y +            ++ LRS E+ +RE+F       L P FVE+ AP L    P+FTP     ++   LP++
Sbjct:  164 ALRAAVSNLSVHFNGALRLRSEFTAEFQAKTAAHTHLLQKFESLLAHLGTIPLHPAL--------VSVARA---------------------------------------------------AGRVMETLLDTVPVESERAWAGQCQTAHQRLHAMFSELEAGFGQLGTTSSREEEARQDAQAETEIQALWKE-----VAEAGQKIRDRQSQRLEKLTTDHGEVVKVVRNAISGDSAQASFAI--LEQKAKSSADLVPSMQVDDEILKQLMDRLAASKTRAMKRMKVRLREVSKAQSAIQRVNSSVGVLKDALKQQNENMVHLEHVAELPRSYRDFLSEIRRRRAYGEAVSSSSSSMMERLATLRSDEVKSRENFLRGSGRHLMPAFVEIFAPTLATPPPLFTPQLPAVVEMDALPDV 515
[Close]
BLAST of mRNA_H-elongata_contig10806.658.1 vs. uniprot
Match: A0A329S4M2_9STRA (ATG11 domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S4M2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.390e-10
Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 1 
Query: 2875 RISMCSFSVQDIALFLPTMVSTPEGSGGTVFLAFHVNCPNRYLSEESIGIARQGLGSSPAFILGRIIMIEQHVATE 3102
            +IS  SFSV D+ALFLPT  S P      V+LAFH+ CP+R+LSEESI          P +++GRI++I++  ATE
Sbjct:  122 KISFRSFSVNDLALFLPT--SAPGSDAQRVYLAFHLGCPHRFLSEESISSFSNDGQRYPDYVVGRIVLIDEQTATE 195
[Close]
BLAST of mRNA_H-elongata_contig10806.658.1 vs. uniprot
Match: A0A067CYA5_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CYA5_SAPPC)

HSP 1 Score: 77.0 bits (188), Expect = 1.470e-10
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 1 
Query: 2869 VPRISMCSFSVQDIALFLPTMVSTPEGSGGTVFLAFHVNCPNRYLSEESIGIARQGLGSSPAFILGRIIMIEQHVATE 3102
            V +I+  SFS  D+ALFLPT   + + S   ++LAFH+ CPNR+LS+ESI +  Q     P +ILGRI+ I++  ATE
Sbjct:  757 VSKIAFRSFSYDDLALFLPTFAPS-DASAAKIYLAFHLGCPNRFLSDESIAMFHQAQNRYPEYILGRIVFIDEREATE 833
[Close]
BLAST of mRNA_H-elongata_contig10806.658.1 vs. uniprot
Match: A0A397E0U3_9STRA (ATG11 domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E0U3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.310e-10
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 1 
Query: 2875 RISMCSFSVQDIALFLPTMVSTPEGSGGTVFLAFHVNCPNRYLSEESIGIARQGLGSSPAFILGRIIMIEQHVATE 3102
            +I+  SFS  D+ALFLPT   T + +   ++LAFH+ CPNR+LS+ESI    Q     P +ILGRI+ I++ VA++
Sbjct:  151 KIAFRSFSYNDLALFLPTFAPT-DAAAAKIYLAFHLGCPNRFLSDESITTFYQMHNRYPEYILGRIVFIDERVASD 225
[Close]
BLAST of mRNA_H-elongata_contig10806.658.1 vs. uniprot
Match: A0A0P1AVE8_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AVE8_PLAHL)

HSP 1 Score: 73.9 bits (180), Expect = 1.450e-9
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 1 
Query: 2875 RISMCSFSVQDIALFLPTMVSTPEGSGGTVFLAFHVNCPNRYLSEESIGIARQGLGSSPAFILGRIIMIEQHVATE 3102
            +IS  SFSV D+ALFLPT  S P      V+LAFH+ CP+R+LSEESI          P +++GRI++I++ +ATE
Sbjct:  812 KISFRSFSVNDLALFLPT--SAPGSEAQRVYLAFHLGCPHRFLSEESISSFSHDGQRYPDYVVGRIVLIDEQIATE 885
[Close]
BLAST of mRNA_H-elongata_contig10806.658.1 vs. uniprot
Match: A0A1V9Y798_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y798_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.620e-9
Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 1 
Query: 2875 RISMCSFSVQDIALFLPTMVSTPEGSGGTVFLAFHVNCPNRYLSEESIGIARQGLGSSPAFILGRIIMIEQHVATE 3102
            +I+  SF   D+ALFLPT   + + S   V+LAFH+ CPNR+LS+ESI    Q     P +ILGRI+ I++ VATE
Sbjct:  999 KIAFRSFEFDDLALFLPTFAPS-DVSAPKVYLAFHLGCPNRFLSDESISTFYQTQNQYPEYILGRIVFIDERVATE 1073
[Close]
BLAST of mRNA_H-elongata_contig10806.658.1 vs. uniprot
Match: V9FBB8_PHYPR (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora parasitica P1569 TaxID=1317065 RepID=V9FBB8_PHYPR)

HSP 1 Score: 72.8 bits (177), Expect = 2.840e-9
Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 1 
Query: 2875 RISMCSFSVQDIALFLPTMVSTPEGSGGTVFLAFHVNCPNRYLSEESIGIARQGLGSSPAFILGRIIMIEQHVATE 3102
            +IS  SFSV D+ALFLPT  S P      V+LAFH+ CP+R+LSEESI          P +++GRI++I++  ATE
Sbjct:  702 KISFRSFSVNDLALFLPT--SAPGSDAQRVYLAFHLGCPHRFLSEESISSFSNDGQRYPDYVVGRIVLIDEQTATE 775
[Close]
BLAST of mRNA_H-elongata_contig10806.658.1 vs. uniprot
Match: A0A3R7K0T3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K0T3_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.890e-9
Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 1 
Query: 2875 RISMCSFSVQDIALFLPTMVSTPEGSGGTVFLAFHVNCPNRYLSEESIGIARQGLGSSPAFILGRIIMIEQHVATE 3102
            +IS  SFSV D+ALFLPT  S P      V+LAFH+ CP+R+LSEESI          P +++GRI++I++  ATE
Sbjct:  724 KISFRSFSVNDLALFLPT--SAPGSDAQRVYLAFHLGCPHRFLSEESISSFSNDGQRYPDYVVGRIVLIDEQTATE 797
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10806.658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZH5_9PHAE2.960e-14337.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIX1_ECTSI7.230e-13035.91Autophagy-related protein 11 n=1 Tax=Ectocarpus si... [more]
A0A7S1D9L6_CYCTE7.370e-1324.64Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A329S4M2_9STRA1.390e-1048.68ATG11 domain-containing protein n=1 Tax=Phytophtho... [more]
A0A067CYA5_SAPPC1.470e-1047.44Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A397E0U3_9STRA4.310e-1046.05ATG11 domain-containing protein (Fragment) n=2 Tax... [more]
A0A0P1AVE8_PLAHL1.450e-948.68Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A1V9Y798_9STRA2.620e-948.68Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
V9FBB8_PHYPR2.840e-948.68Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A3R7K0T3_9STRA2.890e-948.68Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10806contigH-elongata_contig10806:279..9068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue2.5e-14
Seed eggNOG ortholog2850.Phatr44229
KEGG koko:K08330
KEGG TC9.A.15.1
KEGG Pathwayko04136,ko04138,ko04139,map04136,map04138,map04139
EggNOG free text desc.Autophagy-related protein 11
EggNOG OGs28MXS@1,2RRBP@2759,2XG9K@2836
Ec32 ortholog descriptionAutophagy-related protein 11
Ec32 orthologEc-07_007840.1
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03029,ko04131
Hectar predicted targeting categoryother localisation
Exons11
Model size3102
Cds size3102
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929609.03878-CDS-H-elongata_contig10806:278..4161622929609.03878-CDS-H-elongata_contig10806:278..416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 279..416 +
1691679090.111611-CDS-H-elongata_contig10806:278..4161691679090.111611-CDS-H-elongata_contig10806:278..416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 279..416 +
1622929609.0601184-CDS-H-elongata_contig10806:993..13801622929609.0601184-CDS-H-elongata_contig10806:993..1380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 994..1380 +
1691679090.1324773-CDS-H-elongata_contig10806:993..13801691679090.1324773-CDS-H-elongata_contig10806:993..1380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 994..1380 +
1622929609.080242-CDS-H-elongata_contig10806:2494..26571622929609.080242-CDS-H-elongata_contig10806:2494..2657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 2495..2657 +
1691679090.1428504-CDS-H-elongata_contig10806:2494..26571691679090.1428504-CDS-H-elongata_contig10806:2494..2657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 2495..2657 +
1622929609.0963652-CDS-H-elongata_contig10806:3397..35071622929609.0963652-CDS-H-elongata_contig10806:3397..3507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 3398..3507 +
1691679090.1520722-CDS-H-elongata_contig10806:3397..35071691679090.1520722-CDS-H-elongata_contig10806:3397..3507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 3398..3507 +
1622929609.1151152-CDS-H-elongata_contig10806:4057..41961622929609.1151152-CDS-H-elongata_contig10806:4057..4196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 4058..4196 +
1691679090.1610782-CDS-H-elongata_contig10806:4057..41961691679090.1610782-CDS-H-elongata_contig10806:4057..4196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 4058..4196 +
1622929609.1300905-CDS-H-elongata_contig10806:4548..46401622929609.1300905-CDS-H-elongata_contig10806:4548..4640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 4549..4640 +
1691679090.1770184-CDS-H-elongata_contig10806:4548..46401691679090.1770184-CDS-H-elongata_contig10806:4548..4640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 4549..4640 +
1622929609.1453626-CDS-H-elongata_contig10806:5268..53911622929609.1453626-CDS-H-elongata_contig10806:5268..5391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 5269..5391 +
1691679090.190814-CDS-H-elongata_contig10806:5268..53911691679090.190814-CDS-H-elongata_contig10806:5268..5391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 5269..5391 +
1622929609.1580088-CDS-H-elongata_contig10806:5879..73111622929609.1580088-CDS-H-elongata_contig10806:5879..7311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 5880..7311 +
1691679090.1997998-CDS-H-elongata_contig10806:5879..73111691679090.1997998-CDS-H-elongata_contig10806:5879..7311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 5880..7311 +
1622929609.1706727-CDS-H-elongata_contig10806:7500..77571622929609.1706727-CDS-H-elongata_contig10806:7500..7757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 7501..7757 +
1691679090.2120411-CDS-H-elongata_contig10806:7500..77571691679090.2120411-CDS-H-elongata_contig10806:7500..7757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 7501..7757 +
1622929609.1825192-CDS-H-elongata_contig10806:8362..84251622929609.1825192-CDS-H-elongata_contig10806:8362..8425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 8363..8425 +
1691679090.2224648-CDS-H-elongata_contig10806:8362..84251691679090.2224648-CDS-H-elongata_contig10806:8362..8425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 8363..8425 +
1622929609.1995213-CDS-H-elongata_contig10806:8870..90681622929609.1995213-CDS-H-elongata_contig10806:8870..9068Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 8871..9068 +
1691679090.230661-CDS-H-elongata_contig10806:8870..90681691679090.230661-CDS-H-elongata_contig10806:8870..9068Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10806 8871..9068 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10806.658.1prot_H-elongata_contig10806.658.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10806 279..9068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10806.658.1

>prot_H-elongata_contig10806.658.1 ID=prot_H-elongata_contig10806.658.1|Name=mRNA_H-elongata_contig10806.658.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1034bp
RQFEQIDALEAAVSNSLDHWEPLQRGHVTLMEKLEEQTLRHDGMLKTFER
DLTALGDIPLHPSLAWNPEEDAVVVAAAEEERGERSPLASGPTDAGWEAG
ATPPSSGGRGRNSQGSISRDPLSLKQQQEAGRRVKLLDCVPVEREHKLLE
SCRTSQRRFGQEGKAVAQKYAAVKRGIEEQRADPVSRDGKVNDLLRQAKK
VCEEQESLTAELRKNYSESFQLASKETWADDQEKQDAIRRMTELMATQEN
IVPTMRDNDLRVRATVVEIARAKAAMSHTLRRRLREVSRLQTDIGKIQKH
QELVRITKKKKAKQFEHLGKVAKMPAAYKAFLREVVRRRRYHQVAEGKIE
EFCGAMSVLRSAEMSARESFRETHLGILPPVFVEMAPGLRNMSPVFTPPR
VTPLQPGELPEIELVELEDVIETRKEPQSEEQSAPTATAPDVSAIVAVAG
VGSVELHVETVQASVGATTAVKEAAAVATQTEEAIPEGGCDKGKSSARDH
LNTAQGGNQGGVVEENQPAPEEAMGVENDGAGDRKGKDEAVKATVDREET
HPAQEEKGTQSTLLESENARLAAELAEARARLEELEHEARARAAPGVTSA
ATPAKRAEEACVNLSAGDGDEAMTSPVDAVGARDEQDNTAETEASTMRNA
ATDVVEGGDVATVLRRRGRSGAKGSSDVTAGGERRRRSVSDEVVGDGRDS
AKPASDRRGSGLSREATQKQLIAYRTGLSMLVKLCNQLVAAAATTTTVTT
GGERGDGGGGATRADAGINQVASTGPRRAPEGTRPGSPPEKSRSAEPPLM
VTNDEPQADAATTTGPTDVSAVAKSEGVSEDAAAAARRPQGLVSGDTDTD
ADNSKVAVEGRRGAARARAEGVGISATAAATPLKTSDDPSPQEASPVETT
LVDGTSGADEGARAGPREAAVVRSASRGVDKIKRAAEHVAAHIRLSHLLA
FEAMASVPRISMCSFSVQDIALFLPTMVSTPEGSGGTVFLAFHVNCPNRY
LSEESIGIARQGLGSSPAFILGRIIMIEQHVATE
back to top

mRNA from alignment at H-elongata_contig10806:279..9068+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10806.658.1 ID=mRNA_H-elongata_contig10806.658.1|Name=mRNA_H-elongata_contig10806.658.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=8790bp|location=Sequence derived from alignment at H-elongata_contig10806:279..9068+ (Himanthalia elongata Himel1 dioecious)
CGCCAATTCGAGCAGATCGACGCCCTTGAAGCGGCCGTTTCGAATTCCCT
GGACCACTGGGAGCCGCTGCAGCGTGGGCACGTCACACTTATGGAAAAGC
TCGAGGAGCAGACATTACGACACGATGGTATGCTCAAGGTACGTGAGAGC
CCTTTTAAAAAATGACCGCCGTAGGATGAATGGGGGAGGGAGAGGGGCTA
GAGAGAAGAGGGCCAAGTTATTGCCGCGGGTTGTGTACCCTGAAAACGAA
GGCGTGTAGATGGAGGTGGAAAAGGATGGACGTAAACAGATAGAACAGAG
ACCAACCAAGAGTATTTGATGCAAGCCATGAGCGTTTTTTGTGGGACTCG
CGGGGCAGCACGTCATGTAGCCTACTAATAACAAGGTAAGAAGGCGTGGA
GTTCGAAGGGTTCTAATAAGTTCAAGTTTTTTTTTTTATAAAAAGGCTCT
TCTAGGAGGCAGTGGAGGCCGGCACAAGTTTCTTCCGAAAAAAGGAAAAA
GTAGAAAACATGCACAATAAATCATCAAAACCTTTTTTGTGTCTTGTCCC
GTAAAAAAACTCAACCTCTCAAAAAGGCTTCCCTGTCAGCATGCACGCCG
GTCTTAGTCCTCTTCTCTGCCCCTTCGAGTCTAACCTGTGTTGAGTGACT
GCCTGTTTTTAAGTATTTTTAAGTATTTGCCTTTTTTTATCGCTTATTCG
CATGTCCGTTCGCAGACGTTCGAGCGAGACCTTACCGCGTTGGGCGACAT
CCCGCTCCACCCTTCGCTGGCTTGGAACCCGGAGGAGGACGCGGTTGTTG
TTGCCGCCGCGGAAGAAGAAAGAGGAGAACGTTCTCCTTTGGCAAGCGGC
CCAACCGATGCCGGTTGGGAGGCAGGTGCAACACCCCCATCTAGTGGCGG
CCGCGGCCGCAACAGCCAGGGATCAATTTCAAGGGATCCCTTGAGCTTAA
AACAGCAGCAGGAGGCGGGAAGGAGGGTTAAACTGCTGGATTGCGTGCCG
GTGGAGCGGGAGCATAAGCTTCTCGAGTCGTGCCGCACGAGCCAGCGGAG
GTTTGGACAAGAGGGGAAGGCGGTAGCGCAGAAATACGCCGCCGTCAAGA
GGGTGAGTTTTTTTTTATTTGAAGACACTTTTTGGTATCATTTAAAAGCT
AGCTTAGCCTTTTCTAATATTGTTTTAGCTCTCTCTGAATTTGAGCTAAA
AATTGTTAACTGAGAACCTGCCTTCTGTAAAACTTATGTTGCTTTTTCTA
ATTTTAAATACGCTAGTACAGAATATAACCCGATAAACTCGTTATGCGGA
ACACAATTTCTCACGAGCTGTAATACAGTCTGAAACCAATCGAGATATAT
ATATATGCATAATGTAACCATGTGCTTTACTGACCTATATACTTGAGTGT
GACGATTTTGTGCTCAAAGGTAGTAATGCATACATTCGAACCCGACGATA
GTTAGTTCCCTGGATGGCACCTCTCACGGCGCTAAGGTGTGAATGTTCGG
AGGGTTGGAATGAGTTCAATGTTTCTTTAATAAAAACCTTATATCTGCTG
CCGAATTATCTGTGTACAATCCGCGAAAGAGGCTTTTGTCTAAAAATATA
CGAAGTATATATTATAATTCGTTCTTTCCATCTAATTTTGCATATCATCA
AACGCTTGCCTCGACTATTTATTTATATTTTTTATGAACCGCGGGGTATA
GAGCCCAAATATCAATTATCAATTATCGATGCGATACCTTCTACTCGCCA
TATATATGTATGTATGTTGTGTTTATTCTCCAAATATTGCGCTTTGCGAA
GAATATATACATAATATTTAATTCAGCCGCACTTTATACTCTTTCCCCGC
TGACTGCGTTGGAAATATTTGCCCCGGTGCTGCGCCACGGGGGTTGCCAA
CCGCACTAAATGCGCTTGATTGCGCAGCCCTCAGACCCACTGCTTGATGC
TCGATCCTGGATACTGTGACGCTTCTTTGATTTAGACAAAGCTTACCTGG
TATATCGCAACCGAAAGATAAGGCCAAAAATGCCTTCTTGGTTTTAACTC
CTTGAGAGCCACCGCCCGTCCCGTCCCTTGTCTCCGGTCTAAAACATCCA
CGGCGGAGATGCGCTTAAGTATCCCCCCCCCCTTCCCAAAAACTACGGCC
ATACGTACCCTTATACTAATGCTAGTACAAATATTTATGGTGGGCGTCCA
TGGCGTCCGGCTGCAGGGCATCGAAGAGCAGCGCGCGGACCCCGTGTCGA
GGGACGGCAAGGTTAATGACCTCTTGCGGCAGGCGAAGAAAGTCTGCGAG
GAACAAGAAAGCCTCACGGCGGAACTCCGGAAGAACTACTCAGAGTCTTT
CCAGCTCGCTTCCAAAGAAACCTGGGCGGGTACGTTATAGACTATGCCAA
CATAGGCTTTAGAAAATAATAATAATAATAATAATAACGAAAACAGTCGT
GTGTGGCATGCTCTAGTTAGCCCCTTTTGTGTTTAGTGGAGCCTGTTCCG
TGAAGGGCGTCACTATACAATACTGCGATGAAGACAATTGTGCTACAGTG
CTGTTTTCTGTTTCCATGGAGTCTCCCTCTCCGGTGTGTGCTGTCGCGTA
GCGTGGTTGGATACACCTTAACATGTGGGGTATCGATCGATGACAAGGTT
TTGTATGCGCTTGTTGTAAGATGCGCAGGCTTTTCGAAAGGAACATCGCT
TTTTCCCTTGGCCGTCAGGGTAGGCGCGTCGACTGAGACCCGGTAATATT
TTTGCCTCTCCCCGTTCGCGCCGAAGACAAGAAAGCACTCGAGCGAGCGC
ACGTCTCCTGTGCTTTGCTGTGTTGTGCTTTGATGTCCATTTCCGTTTCT
GTTACGTTCGAATACAAGATGTTTGCTTTATTTGATTTTTTAACTTGATC
TTGATTTCTTTCTTTTGTTTTTGGTTTTCTTTAAAACATCCTGAACTCGT
TTTGTTTCATATGTACTGTATTATTTTTTAGAGAAGAGTTTTCTTGTTTT
TGGTTTTCTTTCCCATATATATATTTATATCTATATATACCTGGTATATA
TTACTTTTTAGACAAGAGTTTTCTTTTTTTTCGTTTTCTTTCCCCTTCAA
ATACGACCCGCGCTTACAGACGACCAGGAAAAGCAAGACGCGATCCGGCG
CATGACTGAGCTGATGGCGACCCAGGAAAACATCGTTCCCACGATGCGGG
ACAACGATCTTCGAGTCAGGGCCACAGTGGTGAGTTTTTGACCTTGGTCG
TTCGACACGAAAACGCGTCCCCGGTAAAAAAACACACACACACACACACA
CATCCGAGTCGAGAGTGTCACGTTACTGCTTTGGTTGAGAGGAGCACGCG
ATCTGTGGCGGCACGCCCAGAATTAAATGCATCACGAAAGCGTTCCAGTG
CGTCTGTGTTCGGGACTTCGAGCGGTACACATCTCGACCCTGAAGGGGGA
AGGCGTCGTATACTCATGTTTTGCATGTCTTCGATGTTAGACCGCATGTG
ACCACGCGTCCTCGGGAGGAAGGCGCATTGTTCGCACATGATCGATCACC
CGCCAATGTGATGAAGCATTCATTGCTGCTTGGCGAAAGAATGGTTCAAT
TAAAAAAAGAAAATCGAAGGGGGCGGAGGGGCGAAACAAAAACAGCTGCA
TTCGTTTTAAAAGACGCCACATTTTCTTGGGGGGTTTTTGTGTGTGCACG
AATTATCTCTTTTTCTGTATTCATCTCTCTATTTCCCTCTATCTCTCTCT
CTCTCTACATTGTGTACATACGACTACAGGTAGAAATCGCGCGCGCGAAG
GCAGCCATGTCCCACACACTTCGAAGACGCCTCCGAGAGGTTTCCAGGCT
GCAGACCGACATCGGGAAGATTCAGAAGCACCAAGAGCTCGTGAGGATAA
CAAAAAAAAAAAAGGCAAGTCGGTTTTATGATGAGTTTTTTCTCTCTTGA
ACAGTACGAGCAGAACTTCTATGGCTCCACGCTAGACTGCTCCACGTCCT
CCTTGTACTCTACTATTGTGTTGTCGACGAAGCCGCGGCTATAACGCGGC
GTATCCCCTGACGGTTGGAGCGTTTGGTTCCTGGCGTTTCTGACCTCTTG
CTTGACTGCCTGCTGATACAGCGAGCTATATATATATATATGTATATTTA
TATATACACACAAAATATAAACAAAGTCACGGTACGCAGAATGAGATGGT
AACCATCCGCTTTGGGTGCGCCCTGTGTTCCCCTTCTTGTGGCGATGCAC
TGTTGTTCGACTTCAGGAAGAGCAGTTTGAGCACCTCGGAAAGGTGGCTA
AAATGCCGGCAGCTTACAAGGCGTTCCTTCGAGAGGTGGTGCGGCGGAGG
CGATACCACCAGGTGATTGGGACGGGACCTCCTGGCACCTGACTGCAGCA
AAACCCTCTCCCTGAGAACCACGCCCGACTGTCATCAAATCTAGCCTTTT
TTCCTAATTAAAAATGAAAGCAGGAAAAATATTTTTCTGAAGAAGTTTTT
CGTAGGATGTAAATATTTTAAGCGCAGCTCTGATTGAGGTTTTTATTCCC
TTGTCACGGATACGAACAGGGGGGTTGAGGAAAAAGAGGGAGGAGGGGGG
TTCTTTCAGGCACTTACATAATGGCATGATTCAGTTATTTTTCTTGATGA
GATCGATCGCTCTCGCTAATACATTTATTTCGTCATCACCCTATGTCTTC
GGACGCGGGGGTTGTTTTCGAGTGTGTGTGTTTTTGGGGTGCCTATAACT
AACTGTAGGTGGTAACGGTGTCGTACGCACTAAAGCTATTCATATCCTAT
CAAAAGGTTGATAATGTTTGCGCTCTTGAAAGCTTTTTCAAAGTGTATCG
TGAGGGGAGCGATAAAAATCCTTGAGCTGATGTTTTTGGTAATGTGTACG
TATTTGTGCGTGCTCTGTGTTGCTTTTTCGATCGTAACTGTTTTATTTTG
CCGACGTTTGACAATCGCGATCGACCGACGACACGAACAGGTCGCCGAGG
GAAAAATTGAGGAGTTCTGCGGCGCCATGTCCGTCCTGCGCTCCGCTGAG
ATGTCGGCGAGGGAAAGCTTCCGAGAGACCCATCTGGGGATCCTGCCTCC
CGTGTTCGTCGAGGTGAAGAGCGCGTGCTGTATGCTAGCTCTTTTTCGTA
AAATAGAACGCCCGCAGTAGGGGCGTTGAAGAAAAAACACACACACACCA
GAGATCAACCGACGCGTCATATCTCTCTTGAATCATTTTTACAATTCGCC
AAGGAATGAAAGCAAAGTGTTATTGTGGTGTGGTGGTGTCTCGCTAGATA
GGCGGCTTTTGTGTTTGCTTTTTCTTGGAATTATCTTACCTTCTAGGAAG
AGGCTTTTACAGCGCCTCAAGAGCTACAAGCTCTTTCAAACGCCATTGGT
TGAATAAAGTGTGTACCGTCGAAACCTGAACCGCGGAGAAAATGATTTTG
TGGGCATTCCCTCTCGACACCAAGGCCGGGATTGTTAAAATAAATAATGA
AGCACTTTACTTGGCTTCGTCGAGAAACACAAACGGTAGGTCGGTCTTAC
ACTAGCCACCTACCCCTACTCCGCTCCCCGCCGAAAACAATATCGTCATA
GATGGCCCCAGGCCTCCGAAACATGTCCCCGGTATTCACGCCTCCCCGGG
TGACACCGCTGCAGCCGGGTGAACTTCCTGAAATCGAACTGGTCGAACTC
GAGGACGTAATCGAGACGCGGAAGGAACCGCAGTCTGAAGAGCAGTCCGC
GCCTACAGCTACGGCGCCGGACGTTTCAGCGATAGTCGCTGTCGCTGGTG
TGGGCAGTGTAGAGCTACACGTGGAAACAGTGCAGGCCTCGGTAGGAGCA
ACAACCGCGGTAAAGGAGGCGGCAGCGGTGGCGACCCAAACGGAGGAAGC
GATCCCAGAGGGCGGGTGCGATAAAGGTAAGAGCAGCGCGCGTGATCATT
TGAACACCGCCCAGGGGGGAAATCAAGGCGGCGTCGTCGAAGAAAATCAA
CCCGCGCCGGAGGAAGCGATGGGGGTAGAAAATGACGGGGCGGGGGATAG
AAAGGGAAAAGACGAAGCGGTGAAGGCGACGGTGGATCGGGAGGAGACCC
ACCCGGCGCAAGAGGAGAAAGGTACGCAGTCGACCCTGCTCGAGTCCGAA
AACGCCCGTCTTGCCGCAGAACTCGCTGAGGCTCGGGCGCGACTCGAGGA
GCTCGAGCACGAGGCCCGAGCGAGAGCAGCGCCGGGGGTAACGTCAGCTG
CAACACCGGCCAAGAGGGCGGAGGAGGCATGTGTGAACCTTTCGGCCGGG
GACGGTGACGAAGCGATGACGTCACCGGTGGATGCGGTCGGTGCTCGTGA
TGAGCAAGACAACACGGCGGAGACGGAGGCATCTACGATGAGGAACGCGG
CAACAGACGTGGTCGAAGGCGGAGACGTTGCGACCGTGCTGAGGAGAAGG
GGTCGGTCGGGGGCAAAGGGCAGCAGCGACGTTACCGCGGGGGGCGAGAG
GAGACGTCGGAGCGTCAGCGACGAAGTGGTCGGTGACGGCCGGGATTCGG
CGAAGCCCGCGTCGGACAGACGGGGCTCGGGTTTGTCAAGGGAAGCGACC
CAGAAGCAGCTGATCGCGTATCGGACTGGCCTCTCGATGTTGGTCAAGCT
CTGCAACCAGCTGGTGGCGGCGGCAGCGACAACAACAACAGTCACGACCG
GTGGTGAGAGGGGTGACGGAGGTGGAGGCGCTACCCGAGCCGATGCGGGA
ATTAATCAAGTGGCCTCGACTGGGCCTCGCCGTGCGCCCGAAGGAACGCG
GCCAGGATCCCCCCCAGAAAAATCGCGATCCGCGGAACCACCCCTGATGG
TGACTAACGACGAACCCCAAGCTGATGCTGCAACTACCACCGGTCCGACC
GACGTCTCCGCCGTCGCAAAGTCGGAAGGCGTTTCCGAGGATGCCGCTGC
TGCCGCACGAAGGCCGCAGGGTTTAGTTTCTGGAGACACCGATACCGATG
CCGACAATTCGAAGGTGGCAGTGGAGGGGAGACGTGACGACGGCGAGAGC
GAGAAAACAGAGAATACGCAAACGGAAGCGACTGAAGAAGTGGAGTCGCC
CAGAGAGGTTGCGGTAGCGTTAGCGCCAGCGCGCTCGGAGACTCTAGGCG
GTGTTAAATCGTCGACGACGGCGGCAGATGCGGAGAACATCTCGACTGGG
TTGGCGTTGGCAGTGAGAACAGGTGGCGCTGCAAGGGCACGGGCAGAGGG
AGTAGGGATATCCGCGACCGCGGCGGCGACGCCATTGAAGACGTCGGATG
ATCCCTCTCCCCAGGAGGCTTCCCCGGTTGAAACAACCCTCGTTGATGGA
ACATCGGGCGCCGACGAGGGCGCTCGGGCAGGGCCGAGAGAAGCCGCAGT
GGTCCGGTCGGCATCGAGAGGTGTCGACAAGATCAAACGGGCTGCGGAGC
ACGTTGCGGCGCACATTCGGCTAAGTCACGTGAGATTTTGATCCATAGTT
TTCTTCTTATTTAAGTCAGGGAGGGGTAGTGAGGAAGGAGATTTATCTTG
CTAGGTTTTGTTGTCCTCAATCGTTTTTCAACGTGACTTTTTTGCTGGTG
TCGCCGGCCTCGTCGTCGTCGTCGCCACCACTGTAATGGTAACTCAAAAC
GCTCATCGTTGCGTCTCGAACAACGGCTACTGCCCCCCCCACGCGGGGGT
TCGGCTTGCAACGGGTTAGCCAGCATGATTACCGCGCACTCAATATCCCC
GAGGAGCATCCAAAGCGATTGGACTGAGCCCGTGTTGTTGATCCTCTCTC
CTCTAATCTTCCCCCGGTGTCTTTATCTCGCGGGCGCGTCCGGGTTCTCC
TCGTGCAACCAGCCTTGTATTTTTTCTTCTGTCTTTGTAGAACAATACAT
GGTACGCTCATAAATAAAATCAATCGTGGTCTCCCTCTCTCTCTGTGTTC
GGCTGAGCTGTGAGAGCTATGGAAGCTGAGAGTTGAAGCTACGCTTTTCT
TCTCTTTTTTCTATATGTTAGTTTTTATCCCCCCCCCCTCTCCCCATTCC
CTTCCTGCACTGGCGGTAGAGCCGAGTCGAAGAGCTCCTCGCCTTCGAAG
CGATGGCTTCCGTGCCGCGGATCTCGATGTGCTCCTTCAGCGTACAGGTA
AAACAAGGCGCGGATAAGGGGAGGGGAGGGGGGGGGGGCGGGGGCTGTGA
GAGGTTGGTACGGCGCCATGCGCGCGAGGTTGCCAATGACCAGACGAAAC
GAAACCCATCGATGCGAGAACCACAGGAAAAAATATTCCGCGACGCAATC
TCGTTACATTTCGCGGTGGCTTTGGCGTCGAATCGAATCGAGGCGACGGG
TTGCTGCGCACTTAGTGTGTCGAACGGCATTCTTTAAGAGGCGGCTACCA
GGGGGGAGCTATTCTTTTTTACTGTAATTCGTGTTTCTTGTACTCCCTCT
CTCTTCCTATTCAAAAAGAGGAAAAAATAAGATGAAAGATGAACGCCCCC
TCCGCATTTTTGCAAAATAAAATTACGGCGTCACTTATAGCGGCGGCCCC
ATTCGTGCGCCGCAACTCTACTCTCTCTCCGCGAGAGCTTAGGACATCGC
CCTCTTCCTGCCGACAATGGTTAGCACTCCCGAAGGGTCGGGCGGCACCG
TCTTCCTCGCGTTTCACGTTAACTGTCCCAACCGGTACTTGTCGGAGGAG
AGTATCGGCATCGCGCGTCAAGGCCTCGGCTCCTCCCCGGCCTTCATACT
GGGCAGGATCATCATGATCGAGCAGCACGTAGCCACCGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig10806:279..9068+

>mRNA_H-elongata_contig10806.658.1 ID=mRNA_H-elongata_contig10806.658.1|Name=mRNA_H-elongata_contig10806.658.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=6204bp|location=Sequence derived from alignment at H-elongata_contig10806:279..9068+ (Himanthalia elongata Himel1 dioecious)
CGCCAATTCGAGCAGATCGACGCCCTTGAAGCGGCCGTTTCGAATTCCCT
GGACCACTGGGAGCCGCTGCAGCGTGGGCACGTCACACTTATGGAAAAGC
TCGAGGAGCAGACATTACGACACGATGGTATGCTCAAGCGCCAATTCGAG
CAGATCGACGCCCTTGAAGCGGCCGTTTCGAATTCCCTGGACCACTGGGA
GCCGCTGCAGCGTGGGCACGTCACACTTATGGAAAAGCTCGAGGAGCAGA
CATTACGACACGATGGTATGCTCAAGACGTTCGAGCGAGACCTTACCGCG
TTGGGCGACATCCCGCTCCACCCTTCGCTGGCTTGGAACCCGGAGGAGGA
CGCGGTTGTTGTTGCCGCCGCGGAAGAAGAAAGAGGAGAACGTTCTCCTT
TGGCAAGCGGCCCAACCGATGCCGGTTGGGAGGCAGGTGCAACACCCCCA
TCTAGTGGCGGCCGCGGCCGCAACAGCCAGGGATCAATTTCAAGGGATCC
CTTGAGCTTAAAACAGCAGCAGGAGGCGGGAAGGAGGGTTAAACTGCTGG
ATTGCGTGCCGGTGGAGCGGGAGCATAAGCTTCTCGAGTCGTGCCGCACG
AGCCAGCGGAGGTTTGGACAAGAGGGGAAGGCGGTAGCGCAGAAATACGC
CGCCGTCAAGAGGACGTTCGAGCGAGACCTTACCGCGTTGGGCGACATCC
CGCTCCACCCTTCGCTGGCTTGGAACCCGGAGGAGGACGCGGTTGTTGTT
GCCGCCGCGGAAGAAGAAAGAGGAGAACGTTCTCCTTTGGCAAGCGGCCC
AACCGATGCCGGTTGGGAGGCAGGTGCAACACCCCCATCTAGTGGCGGCC
GCGGCCGCAACAGCCAGGGATCAATTTCAAGGGATCCCTTGAGCTTAAAA
CAGCAGCAGGAGGCGGGAAGGAGGGTTAAACTGCTGGATTGCGTGCCGGT
GGAGCGGGAGCATAAGCTTCTCGAGTCGTGCCGCACGAGCCAGCGGAGGT
TTGGACAAGAGGGGAAGGCGGTAGCGCAGAAATACGCCGCCGTCAAGAGG
GGCATCGAAGAGCAGCGCGCGGACCCCGTGTCGAGGGACGGCAAGGTTAA
TGACCTCTTGCGGCAGGCGAAGAAAGTCTGCGAGGAACAAGAAAGCCTCA
CGGCGGAACTCCGGAAGAACTACTCAGAGTCTTTCCAGCTCGCTTCCAAA
GAAACCTGGGCGGGGCATCGAAGAGCAGCGCGCGGACCCCGTGTCGAGGG
ACGGCAAGGTTAATGACCTCTTGCGGCAGGCGAAGAAAGTCTGCGAGGAA
CAAGAAAGCCTCACGGCGGAACTCCGGAAGAACTACTCAGAGTCTTTCCA
GCTCGCTTCCAAAGAAACCTGGGCGGACGACCAGGAAAAGCAAGACGCGA
TCCGGCGCATGACTGAGCTGATGGCGACCCAGGAAAACATCGTTCCCACG
ATGCGGGACAACGATCTTCGAGTCAGGGCCACAGTGACGACCAGGAAAAG
CAAGACGCGATCCGGCGCATGACTGAGCTGATGGCGACCCAGGAAAACAT
CGTTCCCACGATGCGGGACAACGATCTTCGAGTCAGGGCCACAGTGGTAG
AAATCGCGCGCGCGAAGGCAGCCATGTCCCACACACTTCGAAGACGCCTC
CGAGAGGTTTCCAGGCTGCAGACCGACATCGGGAAGATTCAGAAGCACCA
AGAGCTCGTGAGGATAACAAAAAAAAAAAAGGCAAGTAGAAATCGCGCGC
GCGAAGGCAGCCATGTCCCACACACTTCGAAGACGCCTCCGAGAGGTTTC
CAGGCTGCAGACCGACATCGGGAAGATTCAGAAGCACCAAGAGCTCGTGA
GGATAACAAAAAAAAAAAAGGCAAAGCAGTTTGAGCACCTCGGAAAGGTG
GCTAAAATGCCGGCAGCTTACAAGGCGTTCCTTCGAGAGGTGGTGCGGCG
GAGGCGATACCACCAGAGCAGTTTGAGCACCTCGGAAAGGTGGCTAAAAT
GCCGGCAGCTTACAAGGCGTTCCTTCGAGAGGTGGTGCGGCGGAGGCGAT
ACCACCAGGTCGCCGAGGGAAAAATTGAGGAGTTCTGCGGCGCCATGTCC
GTCCTGCGCTCCGCTGAGATGTCGGCGAGGGAAAGCTTCCGAGAGACCCA
TCTGGGGATCCTGCCTCCCGTGTTCGTCGAGGTCGCCGAGGGAAAAATTG
AGGAGTTCTGCGGCGCCATGTCCGTCCTGCGCTCCGCTGAGATGTCGGCG
AGGGAAAGCTTCCGAGAGACCCATCTGGGGATCCTGCCTCCCGTGTTCGT
CGAGATGGCCCCAGGCCTCCGAAACATGTCCCCGGTATTCACGCCTCCCC
GGGTGACACCGCTGCAGCCGGGTGAACTTCCTGAAATCGAACTGGTCGAA
CTCGAGGACGTAATCGAGACGCGGAAGGAACCGCAGTCTGAAGAGCAGTC
CGCGCCTACAGCTACGGCGCCGGACGTTTCAGCGATAGTCGCTGTCGCTG
GTGTGGGCAGTGTAGAGCTACACGTGGAAACAGTGCAGGCCTCGGTAGGA
GCAACAACCGCGGTAAAGGAGGCGGCAGCGGTGGCGACCCAAACGGAGGA
AGCGATCCCAGAGGGCGGGTGCGATAAAGGTAAGAGCAGCGCGCGTGATC
ATTTGAACACCGCCCAGGGGGGAAATCAAGGCGGCGTCGTCGAAGAAAAT
CAACCCGCGCCGGAGGAAGCGATGGGGGTAGAAAATGACGGGGCGGGGGA
TAGAAAGGGAAAAGACGAAGCGGTGAAGGCGACGGTGGATCGGGAGGAGA
CCCACCCGGCGCAAGAGGAGAAAGGTACGCAGTCGACCCTGCTCGAGTCC
GAAAACGCCCGTCTTGCCGCAGAACTCGCTGAGGCTCGGGCGCGACTCGA
GGAGCTCGAGCACGAGGCCCGAGCGAGAGCAGCGCCGGGGGTAACGTCAG
CTGCAACACCGGCCAAGAGGGCGGAGGAGGCATGTGTGAACCTTTCGGCC
GGGGACGGTGACGAAGCGATGACGTCACCGGTGGATGCGGTCGGTGCTCG
TGATGAGCAAGACAACACGGCGGAGACGGAGGCATCTACGATGAGGAACG
CGGCAACAGACGTGGTCGAAGGCGGAGACGTTGCGACCGTGCTGAGGAGA
AGGGGTCGGTCGGGGGCAAAGGGCAGCAGCGACGTTACCGCGGGGGGCGA
GAGGAGACGTCGGAGCGTCAGCGACGAAGTGGTCGGTGACGGCCGGGATT
CGGCGAAGCCCGCGTCGGACAGACGGGGCTCGGGTTTGTCAAGGGAAGCG
ACCCAGAAGCAGCTGATCGCGTATCGGACTGGCCTCTCGATGTTGGTCAA
GCTCTGCAACCAGCTGGTGGCGGCGGCAGCGACAACAACAACAGTCACGA
CCGGTGGTGAGAGGGGTGACGGAGGTGGAGGCGCTACCCGAGCCGATGCG
GGAATTAATCAAGTGGCCTCGACTGGGCCTCGCCGTGCGCCCGAAGGAAC
GCGGCCAGGATCCCCCCCAGAAAAATCGCGATCCGCGGAACCACCCCTGA
TGGTGACTAACGACGAACCCCAAGCTGATGCTGCAACTACCACCGGTCCG
ACCGACGTCTCCGCCGTCGCAAAGTCGGAAGGCGTTTCCGAGGATGCCGC
TGCTGCCGCACGAAGGCCGCAGGGTTTAGTTTCTGGAGACACCGATACCG
ATGCCGACAATTCGAAGGTGGCAGTGGAGGGGAGACATGGCCCCAGGCCT
CCGAAACATGTCCCCGGTATTCACGCCTCCCCGGGTGACACCGCTGCAGC
CGGGTGAACTTCCTGAAATCGAACTGGTCGAACTCGAGGACGTAATCGAG
ACGCGGAAGGAACCGCAGTCTGAAGAGCAGTCCGCGCCTACAGCTACGGC
GCCGGACGTTTCAGCGATAGTCGCTGTCGCTGGTGTGGGCAGTGTAGAGC
TACACGTGGAAACAGTGCAGGCCTCGGTAGGAGCAACAACCGCGGTAAAG
GAGGCGGCAGCGGTGGCGACCCAAACGGAGGAAGCGATCCCAGAGGGCGG
GTGCGATAAAGGTAAGAGCAGCGCGCGTGATCATTTGAACACCGCCCAGG
GGGGAAATCAAGGCGGCGTCGTCGAAGAAAATCAACCCGCGCCGGAGGAA
GCGATGGGGGTAGAAAATGACGGGGCGGGGGATAGAAAGGGAAAAGACGA
AGCGGTGAAGGCGACGGTGGATCGGGAGGAGACCCACCCGGCGCAAGAGG
AGAAAGGTACGCAGTCGACCCTGCTCGAGTCCGAAAACGCCCGTCTTGCC
GCAGAACTCGCTGAGGCTCGGGCGCGACTCGAGGAGCTCGAGCACGAGGC
CCGAGCGAGAGCAGCGCCGGGGGTAACGTCAGCTGCAACACCGGCCAAGA
GGGCGGAGGAGGCATGTGTGAACCTTTCGGCCGGGGACGGTGACGAAGCG
ATGACGTCACCGGTGGATGCGGTCGGTGCTCGTGATGAGCAAGACAACAC
GGCGGAGACGGAGGCATCTACGATGAGGAACGCGGCAACAGACGTGGTCG
AAGGCGGAGACGTTGCGACCGTGCTGAGGAGAAGGGGTCGGTCGGGGGCA
AAGGGCAGCAGCGACGTTACCGCGGGGGGCGAGAGGAGACGTCGGAGCGT
CAGCGACGAAGTGGTCGGTGACGGCCGGGATTCGGCGAAGCCCGCGTCGG
ACAGACGGGGCTCGGGTTTGTCAAGGGAAGCGACCCAGAAGCAGCTGATC
GCGTATCGGACTGGCCTCTCGATGTTGGTCAAGCTCTGCAACCAGCTGGT
GGCGGCGGCAGCGACAACAACAACAGTCACGACCGGTGGTGAGAGGGGTG
ACGGAGGTGGAGGCGCTACCCGAGCCGATGCGGGAATTAATCAAGTGGCC
TCGACTGGGCCTCGCCGTGCGCCCGAAGGAACGCGGCCAGGATCCCCCCC
AGAAAAATCGCGATCCGCGGAACCACCCCTGATGGTGACTAACGACGAAC
CCCAAGCTGATGCTGCAACTACCACCGGTCCGACCGACGTCTCCGCCGTC
GCAAAGTCGGAAGGCGTTTCCGAGGATGCCGCTGCTGCCGCACGAAGGCC
GCAGGGTTTAGTTTCTGGAGACACCGATACCGATGCCGACAATTCGAAGG
TGGCAGTGGAGGGGAGACGTGGCGCTGCAAGGGCACGGGCAGAGGGAGTA
GGGATATCCGCGACCGCGGCGGCGACGCCATTGAAGACGTCGGATGATCC
CTCTCCCCAGGAGGCTTCCCCGGTTGAAACAACCCTCGTTGATGGAACAT
CGGGCGCCGACGAGGGCGCTCGGGCAGGGCCGAGAGAAGCCGCAGTGGTC
CGGTCGGCATCGAGAGGTGTCGACAAGATCAAACGGGCTGCGGAGCACGT
TGCGGCGCACATTCGGCTAAGTCACGTGGCGCTGCAAGGGCACGGGCAGA
GGGAGTAGGGATATCCGCGACCGCGGCGGCGACGCCATTGAAGACGTCGG
ATGATCCCTCTCCCCAGGAGGCTTCCCCGGTTGAAACAACCCTCGTTGAT
GGAACATCGGGCGCCGACGAGGGCGCTCGGGCAGGGCCGAGAGAAGCCGC
AGTGGTCCGGTCGGCATCGAGAGGTGTCGACAAGATCAAACGGGCTGCGG
AGCACGTTGCGGCGCACATTCGGCTAAGTCACCTCCTCGCCTTCGAAGCG
ATGGCTTCCGTGCCGCGGATCTCGATGTGCTCCTTCAGCGTACAGCTCCT
CGCCTTCGAAGCGATGGCTTCCGTGCCGCGGATCTCGATGTGCTCCTTCA
GCGTACAGGACATCGCCCTCTTCCTGCCGACAATGGTTAGCACTCCCGAA
GGGTCGGGCGGCACCGTCTTCCTCGCGTTTCACGTTAACTGTCCCAACCG
GTACTTGTCGGAGGAGAGTATCGGCATCGCGCGTCAAGGCCTCGGCTCCT
CCCCGGCCTTCATACTGGGCAGGATCATCATGATCGAGCAGCACGTAGCC
ACCGAGGACATCGCCCTCTTCCTGCCGACAATGGTTAGCACTCCCGAAGG
GTCGGGCGGCACCGTCTTCCTCGCGTTTCACGTTAACTGTCCCAACCGGT
ACTTGTCGGAGGAGAGTATCGGCATCGCGCGTCAAGGCCTCGGCTCCTCC
CCGGCCTTCATACTGGGCAGGATCATCATGATCGAGCAGCACGTAGCCAC
CGAG
back to top