mRNA_H-elongata_contig10801.655.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10801.655.1
Unique NamemRNA_H-elongata_contig10801.655.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10801.655.1 vs. uniprot
Match: D7FUJ5_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ5_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 4.940e-5
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 2 
Query:    2 IKRPSYGVVGSQKAEYCTVHALEGMINVVNKRCSRDGCFKLA 127
            +K+PSYG  G +KAE+C  HAL+GM +VV+KRC   GC KL+
Sbjct:    1 MKKPSYGKDGGKKAEFCVRHALQGMFDVVSKRCGHPGCTKLS 42
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10801.655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUJ5_ECTSI4.940e-557.14EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10801contigH-elongata_contig10801:2560..4522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1724
Cds size882
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10801.655.1prot_H-elongata_contig10801.655.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10801 3568..4449 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929608.789907-UTR-H-elongata_contig10801:2559..27741622929608.789907-UTR-H-elongata_contig10801:2559..2774Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10801 2560..2774 -
1691679089.9852529-UTR-H-elongata_contig10801:2559..27741691679089.9852529-UTR-H-elongata_contig10801:2559..2774Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10801 2560..2774 -
1622929608.8029377-UTR-H-elongata_contig10801:3013..35671622929608.8029377-UTR-H-elongata_contig10801:3013..3567Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10801 3014..3567 -
1691679089.995435-UTR-H-elongata_contig10801:3013..35671691679089.995435-UTR-H-elongata_contig10801:3013..3567Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10801 3014..3567 -
1622929608.838183-UTR-H-elongata_contig10801:4449..45221622929608.838183-UTR-H-elongata_contig10801:4449..4522Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10801 4450..4522 -
1691679090.0148616-UTR-H-elongata_contig10801:4449..45221691679090.0148616-UTR-H-elongata_contig10801:4449..4522Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10801 4450..4522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929608.8186412-CDS-H-elongata_contig10801:3567..44491622929608.8186412-CDS-H-elongata_contig10801:3567..4449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10801 3568..4449 -
1691679090.0050786-CDS-H-elongata_contig10801:3567..44491691679090.0050786-CDS-H-elongata_contig10801:3567..4449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10801 3568..4449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10801.655.1

>prot_H-elongata_contig10801.655.1 ID=prot_H-elongata_contig10801.655.1|Name=mRNA_H-elongata_contig10801.655.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=294bp
MINVVNKRCSRDGCFKLASYGVAGSKKAEYCAVHALEGMVDVVNKRCASD
ECFKRATFGVAGSKKAEYCAVHALEGMMNVRKKRCASEGCFKQPSYSVAD
SKITEYCGVHALKGMINIKNKRCASDVCLHQSNGMASSKKAKHCAVHALE
GMVKFMNKICESDECLQYPSYGVADSKKAHYCAVHALEGMIHVYNKGCAS
DGCIKRPSYGIAGSKKYCALHPLEGMTDITIKTCDGDISAAQNQARTIKR
VPEISAREVSTLEREITTKFQRPCYNALSDAVSVKTEMSLSMS*
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mRNA from alignment at H-elongata_contig10801:2560..4522-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10801.655.1 ID=mRNA_H-elongata_contig10801.655.1|Name=mRNA_H-elongata_contig10801.655.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1963bp|location=Sequence derived from alignment at H-elongata_contig10801:2560..4522- (Himanthalia elongata Himel1 dioecious)
TATTAAGCGTCCGAGTTATGGCGTAGTCGGCAGCCAAAAAGCGGAATACT
GCACGGTTCATGCTTTGGAAGGGATGATCAACGTCGTGAACAAAAGGTGT
TCAAGGGATGGATGCTTTAAGCTTGCAAGTTATGGCGTGGCCGGCAGCAA
GAAAGCGGAATACTGCGCGGTGCATGCCTTGGAAGGGATGGTTGACGTTG
TGAACAAGAGGTGTGCAAGTGATGAATGCTTTAAGCGTGCAACTTTTGGC
GTGGCCGGAAGCAAGAAAGCGGAATACTGCGCGGTGCATGCTTTGGAAGG
AATGATGAACGTTAGGAAGAAGAGGTGTGCAAGTGAAGGATGCTTCAAGC
AACCGAGTTATAGTGTGGCCGACAGCAAGATAACAGAATACTGCGGGGTG
CATGCTTTGAAAGGGATGATCAACATTAAAAACAAGAGGTGTGCAAGTGA
TGTATGCTTGCATCAGAGTAACGGCATGGCCAGCAGCAAAAAAGCAAAAC
ACTGCGCAGTTCATGCTTTGGAGGGGATGGTCAAATTTATGAACAAAATA
TGTGAAAGTGATGAGTGCTTACAGTATCCGAGTTATGGCGTGGCCGACAG
CAAAAAAGCGCATTACTGCGCGGTGCATGCGTTGGAAGGGATGATTCATG
TTTATAACAAGGGGTGTGCTAGCGATGGATGCATTAAGCGTCCGAGTTAT
GGCATAGCCGGCAGCAAAAAGTATTGCGCGTTGCACCCTTTGGAAGGGAT
GACCGACATTACGATTAAGACTTGTGATGGTGATATTTCGGCTGCACAAA
ATCAGGCTAGGACCATAAAGAGAGTGCCCGAGATTAGTGCAAGAGAAGTA
TCTACTTTAGAGAGAGAAATTACGACTAAGTTTCAACGCCCCTGTTATAA
CGCATTATCAGATGCAGTAAGCGTAAAAACTGAGATGTCCCTATCTATGT
CATAGTGTATAATGATTTCGATGTTAAAGGTTGGAAAGAATATACTGGAG
ATCATACGGGGCTTTTGCGCTCCGGGGTTACCATACCTCCGAAGTGGTCT
CAGTTCGCATGTTGCAACAAGCAGTGGACAGGGAGGTTTGTTTGTTATAT
CTGGTAAAAGGTAAAAAAAATGAAATGCCAAACTTTGTTCTACTTGGTAC
ATTTTGTTTTTTTTACGTGTGCGCGGAAAGCTCAGTTCGTAAGACCATAT
CGATCCGGTACGTGCAAAGAGGCTGCAACGGACACAAACACCCGCACTAC
TACAAACCTTTTATGAAGGATGTAACATTCCTTTCTCTTGACTGCCTCGA
AGAGGCACCCGCTACAATGTATGTTTTGAATGCACGGTAGAGTTCATCTC
GTTAAAGGAAATGTTTTTAGTACAGGGGGGCGATCAATATTTACGTCGCG
GTTCCCATCTGCGACATCGTTCTTGCTTCTTCTCGGTTTCTTTGTCACTG
CGTATTCGTGATCGGCGATTGGCAAGCAACCATCCCCCGTCTTGGAAGAA
AGGCGTTCGGCAATGGACAATATGCCCCCCGTCTCGGATAAACAACCTAC
CCAGGCTAGAGTTCACCAACTTCTCTTGGTATCTAAACTTTAGGGGGGGG
GGTTAATAGTGACGCCGAGGTTCATCCGCGCAATGCGAATATGGCTCGTT
TTCTGTTCTTCACCGTTTTCATACTTAGCACCAGCGCGACTCGTCCCAAA
GAGGCACACTTCCACTCTCGCCCAACGATGAAGCATAACAACGTCGAGGT
TTAAGCGTACGTGGATTCATCTGAGGTGGACTTCGGCAATGGTTGAGGTG
TCACAAATACCCGATAAAATACCCAGGCGGTCGAGTACGAATTTAAACGA
CACTGGAGGCTCAGGCAAGGCACGTGCAGACACTTGCCTTGGTGGAAGCA
TCATGTCAGCGACTTTCCCATGGTGGCGAGACTAGCTCGCCGTGTGCTAG
CTATTCTTGCCAT
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Coding sequence (CDS) from alignment at H-elongata_contig10801:2560..4522-

>mRNA_H-elongata_contig10801.655.1 ID=mRNA_H-elongata_contig10801.655.1|Name=mRNA_H-elongata_contig10801.655.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1764bp|location=Sequence derived from alignment at H-elongata_contig10801:2560..4522- (Himanthalia elongata Himel1 dioecious)
ATGATCAACGTCGTGAACAAAAGGTGTTCAAGGGATGGATGCTTTAAGCT
TGCAAGTTATGGCGTGGCCGGCAGCAAGAAAGCGGAATACTGCGCGGTGC
ATGCCTTGGAAGGGATGGTTGACGTTGTGAACAAGAGGTGTGCAAGTGAT
GAATGCTTTAAGCGTGCAACTTTTGGCGTGGCCGGAAGCAAGAAAGCGGA
ATACTGCGCGGTGCATGCTTTGGAAGGAATGATGAACGTTAGGAAGAAGA
GGTGTGCAAGTGAAGGATGCTTCAAGCAACCGAGTTATAGTGTGGCCGAC
AGCAAGATAACAGAATACTGCGGGGTGCATGCTTTGAAAGGGATGATCAA
CATTAAAAACAAGAGGTGTGCAAGTGATGTATGCTTGCATCAGAGTAACG
GCATGGCCAGCAGCAAAAAAGCAAAACACTGCGCAGTTCATGCTTTGGAG
GGGATGGTCAAATTTATGAACAAAATATGTGAAAGTGATGAGTGCTTACA
GTATCCGAGTTATGGCGTGGCCGACAGCAAAAAAGCGCATTACTGCGCGG
TGCATGCGTTGGAAGGGATGATTCATGTTTATAACAAGGGGTGTGCTAGC
GATGGATGCATTAAGCGTCCGAGTTATGGCATAGCCGGCAGCAAAAAGTA
TTGCGCGTTGCACCCTTTGGAAGGGATGACCGACATTACGATTAAGACTT
GTGATGGTGATATTTCGGCTGCACAAAATCAGGCTAGGACCATAAAGAGA
GTGCCCGAGATTAGTGCAAGAGAAGTATCTACTTTAGAGAGAGAAATTAC
GACTAAGTTTCAACGCCCCTGTTATAACGCATTATCAGATGCAGTAAGCG
TAAAAACTGAGATGTCCCTATCTATGTCATAGATGATCAACGTCGTGAAC
AAAAGGTGTTCAAGGGATGGATGCTTTAAGCTTGCAAGTTATGGCGTGGC
CGGCAGCAAGAAAGCGGAATACTGCGCGGTGCATGCCTTGGAAGGGATGG
TTGACGTTGTGAACAAGAGGTGTGCAAGTGATGAATGCTTTAAGCGTGCA
ACTTTTGGCGTGGCCGGAAGCAAGAAAGCGGAATACTGCGCGGTGCATGC
TTTGGAAGGAATGATGAACGTTAGGAAGAAGAGGTGTGCAAGTGAAGGAT
GCTTCAAGCAACCGAGTTATAGTGTGGCCGACAGCAAGATAACAGAATAC
TGCGGGGTGCATGCTTTGAAAGGGATGATCAACATTAAAAACAAGAGGTG
TGCAAGTGATGTATGCTTGCATCAGAGTAACGGCATGGCCAGCAGCAAAA
AAGCAAAACACTGCGCAGTTCATGCTTTGGAGGGGATGGTCAAATTTATG
AACAAAATATGTGAAAGTGATGAGTGCTTACAGTATCCGAGTTATGGCGT
GGCCGACAGCAAAAAAGCGCATTACTGCGCGGTGCATGCGTTGGAAGGGA
TGATTCATGTTTATAACAAGGGGTGTGCTAGCGATGGATGCATTAAGCGT
CCGAGTTATGGCATAGCCGGCAGCAAAAAGTATTGCGCGTTGCACCCTTT
GGAAGGGATGACCGACATTACGATTAAGACTTGTGATGGTGATATTTCGG
CTGCACAAAATCAGGCTAGGACCATAAAGAGAGTGCCCGAGATTAGTGCA
AGAGAAGTATCTACTTTAGAGAGAGAAATTACGACTAAGTTTCAACGCCC
CTGTTATAACGCATTATCAGATGCAGTAAGCGTAAAAACTGAGATGTCCC
TATCTATGTCATAG
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