mRNA_H-elongata_contig107887.644.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107887.644.1
Unique NamemRNA_H-elongata_contig107887.644.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig107887.644.1 vs. uniprot
Match: D8LHW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHW4_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.050e-13
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 3 
Query:  114 MAEAAVRDKIYEYKANSNLVLTAENRDRRRGDEGTGEVESLYGRLGKKRMG 266
            MAE AVR+KI+EYKANSNLVLTA+   RRRG+EGTGEVESL+GR+  ++MG
Sbjct:    1 MAEDAVRNKIFEYKANSNLVLTADRDSRRRGEEGTGEVESLHGRMKGQKMG 51
[Close]
BLAST of mRNA_H-elongata_contig107887.644.1 vs. uniprot
Match: A0A8J2SIM1_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIM1_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.370e-10
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 3 
Query:  114 MAEAAVRDKIYEYKANSNLVLTAENRDRRRGDEGTGEVESLYGRLGKKRMG 266
            MAE   R++ YEY+ANSNLVL A+   RRR DE TGEVESL+GR+G +RMG
Sbjct:    1 MAEEFARNRQYEYRANSNLVLEADRETRRRTDEPTGEVESLWGRMGAQRMG 51
[Close]
BLAST of mRNA_H-elongata_contig107887.644.1 vs. uniprot
Match: F0Y9C7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9C7_AURAN)

HSP 1 Score: 64.3 bits (155), Expect = 4.760e-10
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 3 
Query:  114 MAEAAVRDKIYEYKANSNLVLTAENRDRRRGDEGTGEVESLYGRLGKKRMG 266
            MAE   R++ YEY+ANSNLVL A+  +RRR DE TGEVESL+G++G ++MG
Sbjct:    1 MAEEFARNRQYEYRANSNLVLEADRENRRRTDEPTGEVESLFGKMGGQKMG 51
[Close]
BLAST of mRNA_H-elongata_contig107887.644.1 vs. uniprot
Match: A0A835YNN3_9STRA (Sec63 Brl domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN3_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.760e-8
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 3 
Query:  114 MAEAAVRDKIYEYKANSNLVLTAENRDRRRGDEGTGEVESLYGRLGKKRMG 266
            MAE   R++ +EYKANSNLVL AE R +RRG++GTGEVESL+G+    +MG
Sbjct:    1 MAEEHARNRQFEYKANSNLVLQAE-RGKRRGEDGTGEVESLWGKTKHMKMG 50
[Close]
BLAST of mRNA_H-elongata_contig107887.644.1 vs. uniprot
Match: A0A482RM62_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RM62_9ARCH)

HSP 1 Score: 55.1 bits (131), Expect = 1.890e-7
Identity = 30/51 (58.82%), Postives = 34/51 (66.67%), Query Frame = 3 
Query:  114 MAEAAVRDKIYEYKANSNLVLTAENRDRRRGDEGTGEVESLYGRLGKKRMG 266
            MA+  +R K+YEY ANSNLVL AE    RR D G GEVE+L GR    RMG
Sbjct:    1 MADEFLRSKLYEYGANSNLVLEAERDGSRRKDAGKGEVETLRGRTNTFRMG 51
[Close]
BLAST of mRNA_H-elongata_contig107887.644.1 vs. uniprot
Match: A0A7J7JY94_BUGNE (SNRNP200 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JY94_BUGNE)

HSP 1 Score: 53.1 bits (126), Expect = 1.990e-6
Identity = 32/53 (60.38%), Postives = 35/53 (66.04%), Query Frame = 3 
Query:  114 MAEAAVRDKIYEYKANSNLVLTAENR--DRRRGDEGTGEVESLYGRLGKKRMG 266
            MA+AA R   YEYKANSNLVLTA+     RR  DE TGEV SL G +   RMG
Sbjct:    1 MADAAARQLQYEYKANSNLVLTADRSLSSRRDKDEATGEVLSLQGHIRGTRMG 53
[Close]
BLAST of mRNA_H-elongata_contig107887.644.1 vs. uniprot
Match: A0A2C9JJQ4_BIOGL (Uncharacterized protein n=3 Tax=Euthyneura TaxID=216307 RepID=A0A2C9JJQ4_BIOGL)

HSP 1 Score: 53.9 bits (128), Expect = 2.180e-6
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 3 
Query:  114 MAEAAVRDKIYEYKANSNLVLTAENR--DRRRGDEGTGEVESLYGRLGKKRMG 266
            MA+A  R   YEYKANSNLVL+ +    DRR  DE TGEV SL G+L   RMG
Sbjct:    1 MADATARSLQYEYKANSNLVLSVDRTLIDRRARDEATGEVMSLVGKLTNTRMG 53
[Close]
BLAST of mRNA_H-elongata_contig107887.644.1 vs. uniprot
Match: A0A2T7PAU9_POMCA (Uncharacterized protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PAU9_POMCA)

HSP 1 Score: 52.8 bits (125), Expect = 5.560e-6
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 3 
Query:  114 MAEAAVRDKIYEYKANSNLVLTAENR--DRRRGDEGTGEVESLYGRLGKKRMG 266
            MA+A  R   YEYKANSNLVL+ +    DRR  DE TGEV SL G+L   RMG
Sbjct:    1 MADATARSLQYEYKANSNLVLSVDRSLIDRRARDEATGEVMSLTGKLQGTRMG 53
[Close]
BLAST of mRNA_H-elongata_contig107887.644.1 vs. uniprot
Match: A0A1Y2GAS0_9FUNG (Sec63 Brl domain-domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GAS0_9FUNG)

HSP 1 Score: 52.8 bits (125), Expect = 5.560e-6
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 3 
Query:  114 MAEAAVRDKIYEYKANSNLVLTAENRDR-RRGDEGTGEVESLYGRLGKKRMG 266
            MA+   +D+ Y+Y  NSNLVL A   D  RRG+E TGE ESLYGR+  K  G
Sbjct:    1 MADKIAKDQQYQYALNSNLVLQANRSDNPRRGNEPTGEAESLYGRIDPKEFG 52
[Close]
BLAST of mRNA_H-elongata_contig107887.644.1 vs. uniprot
Match: A0A2P6N243_9EUKA (Pre-mRNA-splicing helicase BRR2 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N243_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 7.600e-6
Identity = 27/51 (52.94%), Postives = 33/51 (64.71%), Query Frame = 3 
Query:  114 MAEAAVRDKIYEYKANSNLVLTAENRDRRRGDEGTGEVESLYGRLGKKRMG 266
            M+E + R K+++YKANSNLVL    R  R  D  TGEV SL G+L   RMG
Sbjct:    1 MSEKSARSKLFDYKANSNLVLQQTERGPRENDGATGEVHSLAGKLTGSRMG 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107887.644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LHW4_ECTSI1.050e-1372.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J2SIM1_9STRA1.370e-1064.71Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
F0Y9C7_AURAN4.760e-1060.78Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A835YNN3_9STRA3.760e-860.78Sec63 Brl domain-containing protein n=1 Tax=Tribon... [more]
A0A482RM62_9ARCH1.890e-758.82Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7J7JY94_BUGNE1.990e-660.38SNRNP200 n=1 Tax=Bugula neritina TaxID=10212 RepID... [more]
A0A2C9JJQ4_BIOGL2.180e-658.49Uncharacterized protein n=3 Tax=Euthyneura TaxID=2... [more]
A0A2T7PAU9_POMCA5.560e-658.49Uncharacterized protein n=2 Tax=Pomacea canalicula... [more]
A0A1Y2GAS0_9FUNG5.560e-653.85Sec63 Brl domain-domain-containing protein n=1 Tax... [more]
A0A2P6N243_9EUKA7.600e-652.94Pre-mRNA-splicing helicase BRR2 n=1 Tax=Planoproto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107887contigH-elongata_contig107887:274..1453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog2880.D8LHW4
Preferred namebrr2
KEGG koko:K12854
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
GOsGO:0000375,GO:0000377,GO:0000388,GO:0000393,GO:0000398,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0065003,GO:0070035,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:0140098,GO:1901360,GO:1990904
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0951@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size266
Cds size153
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107887.644.1prot_H-elongata_contig107887.644.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107887 274..1340 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929607.742817-CDS-H-elongata_contig107887:273..3811622929607.742817-CDS-H-elongata_contig107887:273..381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107887 274..381 -
1691679089.5225-CDS-H-elongata_contig107887:273..3811691679089.5225-CDS-H-elongata_contig107887:273..381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107887 274..381 -
1622929607.762146-CDS-H-elongata_contig107887:1295..13401622929607.762146-CDS-H-elongata_contig107887:1295..1340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107887 1296..1340 -
1691679089.5372906-CDS-H-elongata_contig107887:1295..13401691679089.5372906-CDS-H-elongata_contig107887:1295..1340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107887 1296..1340 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929607.778525-UTR-H-elongata_contig107887:1340..14531622929607.778525-UTR-H-elongata_contig107887:1340..1453Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107887 1341..1453 -
1691679089.548425-UTR-H-elongata_contig107887:1340..14531691679089.548425-UTR-H-elongata_contig107887:1340..1453Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107887 1341..1453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107887.644.1

>prot_H-elongata_contig107887.644.1 ID=prot_H-elongata_contig107887.644.1|Name=mRNA_H-elongata_contig107887.644.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
MAEAAVRDKIYEYKANSNLVLTAENRDRRRGDEGTGEVESLYGRLGKKRM
G
back to top

mRNA from alignment at H-elongata_contig107887:274..1453-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107887.644.1 ID=mRNA_H-elongata_contig107887.644.1|Name=mRNA_H-elongata_contig107887.644.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1180bp|location=Sequence derived from alignment at H-elongata_contig107887:274..1453- (Himanthalia elongata Himel1 dioecious)
ATGAGGAAATGTGAGTTGTAGTACCATTGTAAAAGCTCAACCCGGGAGGA
AAAGGAGAAACGAGGCCGTATATCGATCTTTCTCAGTAGAAGTGATAAAA
ACGCGCTACAACCATGGCGGAAGCTGCTGTTCGCGACAAGATCTACGAGT
ACAAAGCTGTGAGTATCCCAGCCACCCTCTCGCGTTTCGCCTTGTCACCA
GGGTGACCCAGTTCAAACCCCTCATTGATCGCACAGCCAATTGCTTCATC
CATGTTGTACCAGCTTTCCCAGTTATCAACGAGTGGACTGTAGATTAGAT
GTACTAGCATATCGCCTAGGTTCTCTGTGTTGGTCTCGTTCGCTATTTCT
GTGCTTGCTATAGTTACAGCTTTGATCGACACGCAACACACAGCAACCAG
CAGCGTGGTCATGATCAATCCACCCGTGTAGATATTACTTAAGTAGGGCT
GCAAGTAGGACTGCAAGTAGGGCTGCAATGATGTGGCATTGGATCACCCC
TGCCATCACACAGCTCCTGTCGCGTCGTAGCTTTTTTTACGGTAAGCGTC
CACACGGGGTTTGTAAGCGTGGGAGCTTGCCCTTCGCATCCGCTACATTC
TGCAACGTACAGCCCACAACAGTAGCAGTAGTTTTCGACACTAATATCAA
GAGTAATCACACCAGTAGGTTGGCGAGGTCTAAGACTATTTCGAGTCATC
TAAGGGATTACCCGGTCGGCATAACTCTACACGAGGGATTGATTGACCCG
GTCGGCACAATGTACGAACAACAACAACAGTAATACGCCGGTTGATCCAC
TTGGCGGTGAACTACTGGTCGAGGGGCATTGTGGGAAGAACGTGGGTAGA
AGCAAAGAAAAAGCGATGGCTGACGAGTGACGAGACTCCCGCACCCATTT
TCGCCAATAAAGCCTCCATCGAACCCCCCAAAACGCGGGAGCCCACCACA
GTCTCAACCCCAATCAATATTGTTGAACTTGTTGTATTTTATCATTTTCC
CATTTCGACGTTTCTACTCCCTGACCACGACCCCCCCCTCCCCCCTCGTA
TGATTCGCATCCACACCTGTAGAACTCCAACCTCGTGCTGACAGCCGAGA
ATCGGGATCGCCGTAGGGGCGATGAGGGCACGGGGGAGGTGGAGTCCCTC
TACGGGCGTCTCGGGAAAAAACGGATGGGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig107887:274..1453-

>mRNA_H-elongata_contig107887.644.1 ID=mRNA_H-elongata_contig107887.644.1|Name=mRNA_H-elongata_contig107887.644.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig107887:274..1453- (Himanthalia elongata Himel1 dioecious)
ATGGCGGAAGCTGCTGTTCGCGACAAGATCTACGAGTACAAAGCTATGGC
GGAAGCTGCTGTTCGCGACAAGATCTACGAGTACAAAGCTAACTCCAACC
TCGTGCTGACAGCCGAGAATCGGGATCGCCGTAGGGGCGATGAGGGCACG
GGGGAGGTGGAGTCCCTCTACGGGCGTCTCGGGAAAAAACGGATGGGGAA
CTCCAACCTCGTGCTGACAGCCGAGAATCGGGATCGCCGTAGGGGCGATG
AGGGCACGGGGGAGGTGGAGTCCCTCTACGGGCGTCTCGGGAAAAAACGG
ATGGGG
back to top