mRNA_H-elongata_contig10780.641.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE) HSP 1 Score: 172 bits (436), Expect = 3.880e-43 Identity = 82/169 (48.52%), Postives = 110/169 (65.09%), Query Frame = 2
Query: 944 RLMLSEHMQDAGHRGVRATSHRLGAYCAWNNMENDIA*FVRQCLHCVDSKVGNAMPRFLGDLVHGTEVGDVLHFDYLSLGESEAIDMGGLFDR-GYKHVLVLMDDVSLFDWLEEAVSCSMEVAARAVLKRCASFGVPKAFTSDGGTHFTGQVMQMVSSRLGVLHYFGVA 1447
RLML HM++AGHRGV AT HRL YC W+ M+ D+ FV+QCLHC+DSK G +PR G+ VHG G+VLHFDYL +G+S + GL + GY ++LV+MDD+S F W+E +C+ + A+ +L C + GVP+ + SD THF VM + LGV F VA
Sbjct: 417 RLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVA 585
BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 172 bits (436), Expect = 1.580e-42 Identity = 82/169 (48.52%), Postives = 110/169 (65.09%), Query Frame = 2
Query: 944 RLMLSEHMQDAGHRGVRATSHRLGAYCAWNNMENDIA*FVRQCLHCVDSKVGNAMPRFLGDLVHGTEVGDVLHFDYLSLGESEAIDMGGLFDR-GYKHVLVLMDDVSLFDWLEEAVSCSMEVAARAVLKRCASFGVPKAFTSDGGTHFTGQVMQMVSSRLGVLHYFGVA 1447
RLML HM++AGHRGV AT HRL YC W+ M+ D+ FV+QCLHC+DSK G +PR G+ VHG G+VLHFDYL +G+S + GL + GY ++LV+MDD+S F W+E +C+ + A+ +L C + GVP+ + SD THF VM + LGV F VA
Sbjct: 1193 RLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVA 1361
BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 160 bits (406), Expect = 1.290e-38 Identity = 78/169 (46.15%), Postives = 108/169 (63.91%), Query Frame = 2
Query: 944 RLMLSEHMQDAGHRGVRATSHRLGAYCAWNNMENDIA*FVRQCLHCVDSKVGNAMPRFLGDLVHGTEVGDVLHFDYLSLGESEAIDMGGLFDR-GYKHVLVLMDDVSLFDWLEEAVSCSMEVAARAVLKRCASFGVPKAFTSDGGTHFTGQVMQMVSSRLGVLHYFGVA 1447
RLM+ HM++AGHRG AT RL YC W ME + FV+QCLHC+DSK G +PR LG+ VHGT G+V+HFDYL +G S + GL + G+K++LV+MDD+S + WLE +C+ + A+ +L C GVP+ + SD +HF +M + + LGV F VA
Sbjct: 1295 RLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNFSVA 1463
BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE) HSP 1 Score: 126 bits (317), Expect = 2.570e-28 Identity = 62/138 (44.93%), Postives = 87/138 (63.04%), Query Frame = 2
Query: 1037 MENDIA*FVRQCLHCVDSKVGNAMPRFLGDLVHGTEVGDVLHFDYLSLGESEAIDMGGLFDR-GYKHVLVLMDDVSLFDWLEEAVSCSMEVAARAVLKRCASFGVPKAFTSDGGTHFTGQVMQMVSSRLGVLHYFGVA 1447
M+ D+ FV+QCLHC+DSK G +PR G+ VHG G+VLHFDYL +G+S + GL + GY ++LV+MDD+S F W+E +C+ + A+ +L C + GVP+ + SD THF VM + LGV F VA
Sbjct: 1 MDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVA 138
BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Match: A0A6H5J9M0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9M0_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 1.800e-20 Identity = 45/112 (40.18%), Postives = 72/112 (64.29%), Query Frame = 2
Query: 1037 MENDIA*FVRQCLHCVDSKVGNAMPRFLGDLVHGTEVGDVLHFDYLSLGESEAIDMGGLFDR-GYKHVLVLMDDVSLFDWLEEAVSCSMEVAARAVLKRCASFGVPKAFTSD 1369
ME + FV+ CL+C+DSK G +P+ LG+ HGT G+V+ FDYL +G S + L + G+K++LV+MDD+S + WLE +C+ + ++ +L C + GVP+ + SD
Sbjct: 1 MEEHVTDFVKHCLNCMDSKAGEKVPQPLGETAHGTRPGEVVLFDYLYVGASGLLGKDSLDEEDGFKYILVMMDDMSNWVWLEPTGACTARLTSQHLLTWCKTLGVPEVWVSD 112
BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE) HSP 1 Score: 105 bits (261), Expect = 4.070e-20 Identity = 58/136 (42.65%), Postives = 86/136 (63.24%), Query Frame = 1
Query: 4 EMRQPETVCELIQFLQATNWMRLSLPHMAEILAPLRALIELQLKGTSR-TKRVASRRAFTDGDWTLERVEAWDNSREMLMNAVELIFRRPDDCRALMFPEASDLLRGCCLTQAPKEDLVAGLYFMDMSHEPFSFLS 408
+MR+PET +L+QFLQA W+R SL +AE++ P+R L+E+ + R TK +A RA WT VEAW ++++++ +AV L + D LMFP+AS+ G LTQ P+E+L G+ M+HEP +FLS
Sbjct: 630 DMRRPETAGKLMQFLQAVKWLRTSLSRLAEVMEPVRTLLEVNMASAPRQTKSIAPNRAIKCEAWTAGMVEAWISAQDLVAHAVALSHPK-DGFAVLMFPDASEEHWGSFLTQVPQEELERGVSVEHMTHEPLAFLS 764
BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Match: A0A6A3GU43_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GU43_9STRA) HSP 1 Score: 102 bits (255), Expect = 6.930e-20 Identity = 58/168 (34.52%), Postives = 87/168 (51.79%), Query Frame = 2
Query: 944 RLMLSEHMQDAGHRGVRATSHRLGAYCAWNNMENDIA*FVRQCLHCVDSKVGNAMPRFLGDLVHGTEVGDVLHFDYLSLGESEAIDMGGLFDRGYKHVLVLMDDVSLFDWLEEAVSCSMEVAARAVLKRCASFGVPKAFTSDGGTHFTGQVMQMVSSRLGVLHYFGVA 1447
RL + H GHRG RAT+ L W M D++ FV CLHC+ + G +PR G+ + T+ ++LHFDYL++ ESE+ G K+VLVL D++S + L + + + ++ FGV + SD G HF QV++ + LG H+F A
Sbjct: 112 RLCVVAHAGARGHRGARATTQALAMVFFWTTMSTDVSVFVSGCLHCMTT-AGGRIPRPFGETLRATKPNEILHFDYLTMVESES---------GLKYVLVLKDNMSGYVGLIACPNPTADYVYTGLMDWFKRFGVVLQWVSDQGVHFRNQVIERLQRALGAQHHFTTA 269
BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Match: A0A225UPK1_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UPK1_9STRA) HSP 1 Score: 100 bits (250), Expect = 9.070e-20 Identity = 56/168 (33.33%), Postives = 82/168 (48.81%), Query Frame = 2
Query: 944 RLMLSEHMQDAGHRGVRATSHRLGAYCAWNNMENDIA*FVRQCLHCVDSKVGNAMPRFLGDLVHGTEVGDVLHFDYLSLGESEAIDMGGLFDRGYKHVLVLMDDVSLFDWLEEAVSCSMEVAARAVLKRCASFGVPKAFTSDGGTHFTGQVMQMVSSRLGVLHYFGVA 1447
R+ + H AGHRGV T ++ W M DI FV CLHC S G PR LG+ +H +++H+DYL +G+SE D +VLV+ DD S A S + + ++ SFGV + + SD GTHF + ++ + +G H+F A
Sbjct: 159 RVSVVGHFGIAGHRGVATTVEKICGQSVWKGMNKDIELFVNPCLHCASSVGGPPQPRLLGEAMHAERPNELIHWDYLFMGDSETKDC---------YVLVIKDDASSLSGCSHAKSRTPTLYF-GLMDWFTSFGVCRTWVSDQGTHFKNKTIESLQHAMGAHHHFTTA 316
BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Match: A0A6A3GX76_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GX76_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.930e-19 Identity = 57/168 (33.93%), Postives = 88/168 (52.38%), Query Frame = 2
Query: 944 RLMLSEHMQDAGHRGVRATSHRLGAYCAWNNMENDIA*FVRQCLHCVDSKVGNAMPRFLGDLVHGTEVGDVLHFDYLSLGESEAIDMGGLFDRGYKHVLVLMDDVSLFDWLEEAVSCSMEVAARAVLKRCASFGVPKAFTSDGGTHFTGQVMQMVSSRLGVLHYFGVA 1447
RL + H +GHRG RAT+ L W M D++ FV CLHC+ + G +P+ G+ + T+ ++LHFDYL++ ESE+ G K+VLVL D++S + L + + + ++ FGV + SD G HF QV++ + LG H+F A
Sbjct: 235 RLCVVAHAGASGHRGARATTQALAVVFFWTTMSTDVSVFVSGCLHCM-ATAGGRIPQPFGETLRATKPNEILHFDYLTMVESES---------GLKYVLVLKDNMSGYVGLIACPNPTADYVYTGLMDWFKRFGVVLQWVSDQGAHFRNQVIERLQRALGAQHHFTTA 392
BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Match: A0A0G4J8M9_PLABS (Integrase catalytic domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J8M9_PLABS) HSP 1 Score: 102 bits (254), Expect = 2.240e-19 Identity = 55/168 (32.74%), Postives = 85/168 (50.60%), Query Frame = 2
Query: 944 RLMLSEHMQDAGHRGVRATSHRLGAYCAWNNMENDIA*FVRQCLHCVDSKVGNAMPRFLGDLVHGTEVGDVLHFDYLSLGESEAIDMGGLFDRGYKHVLVLMDDVSLFDWLEEAVSCSMEVAARAVLKRCASFGVPKAFTSDGGTHFTGQVMQMVSSRLGVLHYFGVA 1447
R+++ H AGHR T + W + DI +QCLHC+ ++ G +PR LG+ +HG + DVL DYL + D YK++L+L DD S + L + + VAA A+ + A F P+ +DGG+HFT +VM+ ++ V H+ A
Sbjct: 608 RILVIGHCASAGHRASEVTKQMITERFFWTKINQDIEAMCQQCLHCITTRGGKKVPRPLGEALHGHQPFDVLTMDYLYVEPVRGAD------HKYKYILLLKDDFSGYVRLIPSAEATSRVAAEALNQWIADFATPEYLVTDGGSHFTAEVMEELTRLRDVQHHITTA 769 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10780.641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10780.641.1 >prot_H-elongata_contig10780.641.1 ID=prot_H-elongata_contig10780.641.1|Name=mRNA_H-elongata_contig10780.641.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp MPRFLGDLVHGTEVGDVLHFDYLSLGESEAIDMGGLFDRGYKHVLVLMDDback to top mRNA from alignment at H-elongata_contig10780:3660..5106+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10780.641.1 ID=mRNA_H-elongata_contig10780.641.1|Name=mRNA_H-elongata_contig10780.641.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1447bp|location=Sequence derived from alignment at H-elongata_contig10780:3660..5106+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10780:3660..5106+ >mRNA_H-elongata_contig10780.641.1 ID=mRNA_H-elongata_contig10780.641.1|Name=mRNA_H-elongata_contig10780.641.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig10780:3660..5106+ (Himanthalia elongata Himel1 dioecious)back to top |