mRNA_H-elongata_contig10774.635.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10774.635.1
Unique NamemRNA_H-elongata_contig10774.635.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10774.635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10774contigH-elongata_contig10774:6765..8340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_001860.1
Exons2
Model size769
Cds size768
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929606.8093467-CDS-H-elongata_contig10774:6764..68101622929606.8093467-CDS-H-elongata_contig10774:6764..6810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10774 6765..6810 +
1691679089.1240542-CDS-H-elongata_contig10774:6764..68101691679089.1240542-CDS-H-elongata_contig10774:6764..6810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10774 6765..6810 +
1622929606.8204708-CDS-H-elongata_contig10774:7618..83401622929606.8204708-CDS-H-elongata_contig10774:7618..8340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10774 7619..8340 +
1691679089.1338491-CDS-H-elongata_contig10774:7618..83401691679089.1338491-CDS-H-elongata_contig10774:7618..8340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10774 7619..8340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10774.635.1prot_H-elongata_contig10774.635.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10774 6765..8340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10774.635.1

>prot_H-elongata_contig10774.635.1 ID=prot_H-elongata_contig10774.635.1|Name=mRNA_H-elongata_contig10774.635.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=256bp
GGSRSHSYHSEGEAADDGYDGSSTSPGNPSRARTSTDGAKSGLYNSFGGI
SANEAVEAADDRERLRGRRVGDEGEDHQGHFNEAEEHDDDGGVGERGYDR
NGQEEEEHLDVDDDLGDRDDDDHDEEEERHRNRGRHHDVGVSGNGDRGVA
VSGVVGRGEIGGTYGRGGRAGGDDGDVVFASRVPDHLDPERRAHAHAYVD
DLENASRGEQGYGGAEGAEVGVAYSSGRQQQQPRNVASHSAEMMPPAPPA
VNGISP
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mRNA from alignment at H-elongata_contig10774:6765..8340+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10774.635.1 ID=mRNA_H-elongata_contig10774.635.1|Name=mRNA_H-elongata_contig10774.635.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1576bp|location=Sequence derived from alignment at H-elongata_contig10774:6765..8340+ (Himanthalia elongata Himel1 dioecious)
GGTGGCAGCCGCAGCCACAGCTACCACAGTGAGGGGGAAGCTGCCGGTGC
GTATTCGCTCCTCCGCGAAAACAGGCGACATGAATACACGTGAATCGCAT
CGTGTGGTGCGCCGCGAGTGCTTTCGCAGGGTCTTCCCTTGTGGGGGAAT
GGCTACTGCTGCTGCAAGTAATCCAGCTGTAGACAGCGCAGTCAAAGGGC
GGGTGTTGGGCTGCTTGCGTAGAAAAAGGAAAGCACTACAGCGGAACTTT
ACGGTATTATGGTATGGTGTGTAGTTGGAAACGATATGGTTTTATTTGGT
GTGGAATTTGTAGATAACTTAATATCATTTTTGTATTAATGGTTCCGGTG
GGGCCACACGTTGCCGGGGGAGCAGGCCCCCGTTGCTTTGAGGAGTTTCG
TGAATGAACCAGAGGAAGTGACGTAGCCGGACGGCTCGTTGTGAGTGTGT
GTGTGTGTGTGTGTAGGTGACGCGAAAATGGCATCGACGAGCCACAGACG
GTGGCTCGAAGGTTTCAGTGCTGGAGCTGTGTGCGCGTGTTTATGATGGG
CTGGCGGCTCTTCTCTCGCTGTTTTTTTCTTTTTTTCTTCGTAATATAGA
AATGGAAATTTGGGGCTCTCTTCCGGTATGCTGTCAAAAATGGCGCCACT
TTCGGAACCGTTAGCGCTGGGTAAATAAATGATTTTATTACAACGTTTTT
AAGGAAAAAATTGCTGCACGGGACTGTGTAGTAAATTCCCTTAGCTCATC
AGCTGCATCGTGTGCAATTCCTTTGCGTGGCTTTCGTGTTCGTGCTTTAC
ATCCCCCCTCCCACCCAACAAACTCTTCGACCTTTTCCGAAACGAATCGA
GTAGATGATGGTTACGATGGCTCCAGCACAAGCCCGGGGAACCCGAGCAG
GGCCCGCACCAGCACGGATGGAGCGAAGAGCGGCTTATACAACTCGTTCG
GTGGGATATCAGCCAATGAGGCGGTGGAGGCCGCGGACGACCGGGAGCGG
CTGAGAGGGCGACGGGTCGGGGATGAAGGTGAGGATCACCAGGGCCACTT
TAACGAGGCGGAGGAGCACGATGATGATGGAGGCGTCGGCGAACGGGGGT
ATGACCGCAATGGGCAAGAGGAGGAGGAGCATCTGGATGTAGACGATGAT
TTGGGGGATCGTGACGATGATGATCACGACGAGGAGGAAGAGCGTCACAG
GAACAGGGGCAGACATCATGATGTTGGCGTCTCCGGCAACGGGGACCGAG
GAGTTGCCGTCTCCGGCGTGGTAGGAAGAGGAGAAATCGGTGGTACCTAC
GGCAGAGGAGGAAGAGCAGGAGGTGATGATGGTGATGTTGTTTTCGCAAG
CCGCGTCCCCGACCACCTGGACCCCGAGCGCCGTGCTCACGCCCACGCGT
ACGTGGATGACCTTGAAAACGCCTCGCGAGGAGAACAAGGGTACGGGGGC
GCCGAGGGAGCGGAGGTGGGGGTGGCATACAGCAGCGGCAGGCAGCAGCA
GCAGCCGCGCAACGTCGCGAGTCACAGCGCGGAGATGATGCCCCCAGCCC
CGCCTGCAGTGAACGGTATCTCCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig10774:6765..8340+

>mRNA_H-elongata_contig10774.635.1 ID=mRNA_H-elongata_contig10774.635.1|Name=mRNA_H-elongata_contig10774.635.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1536bp|location=Sequence derived from alignment at H-elongata_contig10774:6765..8340+ (Himanthalia elongata Himel1 dioecious)
GGTGGCAGCCGCAGCCACAGCTACCACAGTGAGGGGGAAGCTGCCGGGTG
GCAGCCGCAGCCACAGCTACCACAGTGAGGGGGAAGCTGCCGATGATGGT
TACGATGGCTCCAGCACAAGCCCGGGGAACCCGAGCAGGGCCCGCACCAG
CACGGATGGAGCGAAGAGCGGCTTATACAACTCGTTCGGTGGGATATCAG
CCAATGAGGCGGTGGAGGCCGCGGACGACCGGGAGCGGCTGAGAGGGCGA
CGGGTCGGGGATGAAGGTGAGGATCACCAGGGCCACTTTAACGAGGCGGA
GGAGCACGATGATGATGGAGGCGTCGGCGAACGGGGGTATGACCGCAATG
GGCAAGAGGAGGAGGAGCATCTGGATGTAGACGATGATTTGGGGGATCGT
GACGATGATGATCACGACGAGGAGGAAGAGCGTCACAGGAACAGGGGCAG
ACATCATGATGTTGGCGTCTCCGGCAACGGGGACCGAGGAGTTGCCGTCT
CCGGCGTGGTAGGAAGAGGAGAAATCGGTGGTACCTACGGCAGAGGAGGA
AGAGCAGGAGGTGATGATGGTGATGTTGTTTTCGCAAGCCGCGTCCCCGA
CCACCTGGACCCCGAGCGCCGTGCTCACGCCCACGCGTACGTGGATGACC
TTGAAAACGCCTCGCGAGGAGAACAAGGGTACGGGGGCGCCGAGGGAGCG
GAGGTGGGGGTGGCATACAGCAGCGGCAGGCAGCAGCAGCAGCCGCGCAA
CGTCGCGAGTCACAGCGCGGAGATGATGCCCCCAGCCCCGCCTGCAGTGA
ACGGTATCTCCCCCATGATGGTTACGATGGCTCCAGCACAAGCCCGGGGA
ACCCGAGCAGGGCCCGCACCAGCACGGATGGAGCGAAGAGCGGCTTATAC
AACTCGTTCGGTGGGATATCAGCCAATGAGGCGGTGGAGGCCGCGGACGA
CCGGGAGCGGCTGAGAGGGCGACGGGTCGGGGATGAAGGTGAGGATCACC
AGGGCCACTTTAACGAGGCGGAGGAGCACGATGATGATGGAGGCGTCGGC
GAACGGGGGTATGACCGCAATGGGCAAGAGGAGGAGGAGCATCTGGATGT
AGACGATGATTTGGGGGATCGTGACGATGATGATCACGACGAGGAGGAAG
AGCGTCACAGGAACAGGGGCAGACATCATGATGTTGGCGTCTCCGGCAAC
GGGGACCGAGGAGTTGCCGTCTCCGGCGTGGTAGGAAGAGGAGAAATCGG
TGGTACCTACGGCAGAGGAGGAAGAGCAGGAGGTGATGATGGTGATGTTG
TTTTCGCAAGCCGCGTCCCCGACCACCTGGACCCCGAGCGCCGTGCTCAC
GCCCACGCGTACGTGGATGACCTTGAAAACGCCTCGCGAGGAGAACAAGG
GTACGGGGGCGCCGAGGGAGCGGAGGTGGGGGTGGCATACAGCAGCGGCA
GGCAGCAGCAGCAGCCGCGCAACGTCGCGAGTCACAGCGCGGAGATGATG
CCCCCAGCCCCGCCTGCAGTGAACGGTATCTCCCCC
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