mRNA_H-elongata_contig107675.630.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107675.630.1
Unique NamemRNA_H-elongata_contig107675.630.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig107675.630.1 vs. uniprot
Match: A0A6H5JGS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS5_9PHAE)

HSP 1 Score: 266 bits (680), Expect = 1.490e-82
Identity = 146/192 (76.04%), Postives = 164/192 (85.42%), Query Frame = 1 
Query:    1 QGSRAMTRLLVEGGASLDAVDVNGNGVVHAAVCDSPAVLAILIDNGADVTVANSHDLTPKGLCEQYCPPRLRGRMLQLLKEAMLARAKETARKERLTESQLNIEAVYHQLAMLRSKLAATAAARTEVPPSEAAAGAQTENSLLTLVEANVRVVEYQRDALQDLETTTTRVERMMRRLHMRLDTMSLKDTSHS 576
            +GSR MTRLLVEGGA+L+AVDVNGNGVVHAAVCDSPAVLAILID+GADVTVAN   LTP+ LCEQYCPPRL+ RMLQLLKE  LA+AK TARK ++ E Q+NIEAVYHQLAMLRSKLAATAAA T++P SEAA GAQ EN+LLTLVEANVRVVE QR AL+++E T  R+ERM RRLHMRLD +   D S S
Sbjct:  467 KGSRVMTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTVANFDGLTPQRLCEQYCPPRLKERMLQLLKEGALAQAKATARKNQVAEEQVNIEAVYHQLAMLRSKLAATAAANTDIPASEAAEGAQMENALLTLVEANVRVVEGQRHALENMEKTVDRMERMFRRLHMRLDLVHPGDVSFS 658
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BLAST of mRNA_H-elongata_contig107675.630.1 vs. uniprot
Match: D7FI34_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI34_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 2.210e-79
Identity = 139/192 (72.40%), Postives = 154/192 (80.21%), Query Frame = 1 
Query:    1 QGSRAMTRLLVEGGASLDAVDVNGNGVVHAAVCDSPAVLAILIDNGADVTVANSHDLTPKGLCEQYCPPRLRGRMLQLLKEAMLARAKETARKERLTESQLNIEAVYHQLAMLRSKLAATAAARTEVPPSEAAAGAQTENSLLTLVEANVRVVEYQRDALQDLETTTTRVERMMRRLHMRLDTMSLKDTSHS 576
            +GSR MTRLLVEGGA+L+AVDVNGNGVVHAAVCDSPAVLAILID+GADVTV+N   LTP+ LCEQYCPPRL+ RMLQLLKEA LA+AK TARK ++ E Q+NIEAVYHQLAMLRSKLAATAAA T++P SEAA GAQ EN+LLTLVEANVRVVE QR               M RRLHMRLD +   D S S
Sbjct:   94 KGSRVMTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTVSNFDGLTPQRLCEQYCPPRLKERMLQLLKEAALAQAKATARKNQVAEEQVNIEAVYHQLAMLRSKLAATAAANTDIPASEAAEGAQMENALLTLVEANVRVVEGQRHXXXXXXXXXXXXXXMFRRLHMRLDLVHPGDVSFS 285
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107675.630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JGS5_9PHAE1.490e-8276.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI34_ECTSI2.210e-7972.40Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107675contigH-elongata_contig107675:81..1717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.0
Seed ortholog evalue2.9e-62
Seed eggNOG ortholog2880.D7FI34
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-10_003340.1
Exons4
Model size579
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107675.630.1prot_H-elongata_contig107675.630.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107675 96..1717 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929606.385457-UTR-H-elongata_contig107675:80..951622929606.385457-UTR-H-elongata_contig107675:80..95Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107675 81..95 +
1691679088.9576607-UTR-H-elongata_contig107675:80..951691679088.9576607-UTR-H-elongata_contig107675:80..95Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107675 81..95 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929606.4106266-CDS-H-elongata_contig107675:95..2601622929606.4106266-CDS-H-elongata_contig107675:95..260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107675 96..260 +
1691679088.968146-CDS-H-elongata_contig107675:95..2601691679088.968146-CDS-H-elongata_contig107675:95..260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107675 96..260 +
1622929606.433455-CDS-H-elongata_contig107675:603..7231622929606.433455-CDS-H-elongata_contig107675:603..723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107675 604..723 +
1691679088.9770043-CDS-H-elongata_contig107675:603..7231691679088.9770043-CDS-H-elongata_contig107675:603..723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107675 604..723 +
1622929606.4501908-CDS-H-elongata_contig107675:1041..12111622929606.4501908-CDS-H-elongata_contig107675:1041..1211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107675 1042..1211 +
1691679088.986027-CDS-H-elongata_contig107675:1041..12111691679088.986027-CDS-H-elongata_contig107675:1041..1211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107675 1042..1211 +
1622929606.4688268-CDS-H-elongata_contig107675:1608..17171622929606.4688268-CDS-H-elongata_contig107675:1608..1717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107675 1609..1717 +
1691679089.0013947-CDS-H-elongata_contig107675:1608..17171691679089.0013947-CDS-H-elongata_contig107675:1608..1717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107675 1609..1717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107675.630.1

>prot_H-elongata_contig107675.630.1 ID=prot_H-elongata_contig107675.630.1|Name=mRNA_H-elongata_contig107675.630.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=188bp
MTRLLVEGGASLDAVDVNGNGVVHAAVCDSPAVLAILIDNGADVTVANSH
DLTPKGLCEQYCPPRLRGRMLQLLKEAMLARAKETARKERLTESQLNIEA
VYHQLAMLRSKLAATAAARTEVPPSEAAAGAQTENSLLTLVEANVRVVEY
QRDALQDLETTTTRVERMMRRLHMRLDTMSLKDTSHS*
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mRNA from alignment at H-elongata_contig107675:81..1717+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107675.630.1 ID=mRNA_H-elongata_contig107675.630.1|Name=mRNA_H-elongata_contig107675.630.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1637bp|location=Sequence derived from alignment at H-elongata_contig107675:81..1717+ (Himanthalia elongata Himel1 dioecious)
CAGGGATCGCGGGCGATGACGCGGCTGTTGGTGGAAGGAGGGGCCAGCCT
GGACGCGGTGGACGTGAATGGCAACGGGGTGGTTCACGCGGCGGTGTGCG
ACTCGCCCGCCGTATTAGCGATCCTCATTGACAACGGAGCGGACGTAACC
GTTGCCAACAGCCACGATCTCACGCCGAAGGTGTGAAAAGAGGCGTAGGA
GGCAAAGCGGCAGTTTATGTACGCCACGCGTTGCTCCGTACGGCGTCGGG
TAGTGTGGATAGGCTGCGTCTACCTGAATGAAGGGCGTCAGGGCAGTCAC
ATGTGAAGTTCGGTTCCGATTCCCGCCGCGATAGTACGAACCGCCTCGAG
CGGATGGCGTTGTCGCGAACGCCGCTTCCTTCTCGTAAGCGCGCGCTTGC
GCTCGAATAATGTTACGATGTAATTTGCGGCTCTTTTAAGGCTCTTGTGC
AATATTAATGCCCCCTGCCGGATCTTTTTCTTCGACTGCTGCCGCTCGGG
GGGGGGGGGGCGGCGTCGCGCAGGGATTGTGTGAGCAATATTGCCCACCG
CGCTTGAGGGGGCGGATGCTTCAGCTCCTGAAGGAGGCGATGCTAGCGCG
GGCGAAGGAAACGGCACGGAAGGAGCGCTTAACCGAGAGCCAGGTATGCC
AACGGGAGGAAGACAGGGAGGACAGCATGAGTCAAGTCTAGCGAATAACG
CAGCTGCTGCTGTACTGTATTAGAGTAGTATAACTCTGCCAGCAGTATTC
AAGGATATATCATCTGGGAATAAAGCGATGGATTATGAGACGGCCTTTTT
TTTAAAGCCGTGTTGCATGCGGAATCAAACTATTTGCCGAGCCGGACCAC
TTGCAAATTGTAACGGTGATGACTTAAAAATACCCCCCCCCCCCCCCGGT
GCGCCCCCTTCCGTCCCCACCACAACACCCCTTCACTCCTATCTGGGATT
CTCCCCGTCAGTTGAATATCGAGGCGGTGTACCACCAGCTCGCGATGCTG
CGGTCGAAGCTAGCGGCGACGGCAGCGGCGCGGACCGAAGTTCCGCCGTC
TGAAGCAGCGGCGGGCGCGCAGACGGAAAATTCCCTTCTGACTCTCGTTG
AGGCCAACGTGCGCGTGGTGGAATACCAGCGGTGAGGAAAGTAGACATGT
TCTTTTGTTTTGCTTTTGTTTTTTGTTTTGCTTTGTTTTGTTTTGTATTG
CTTTTTTGTTTCTGAGCTTTTTGTTGCCCCTTCCTTCGATTGCGAATGAA
ATACTTCGTATAATAGTTTGTGGAGAAAAGCGCTCGCGCTGCTTTCTAAT
CGGAGGGCGGTTCGCGAGACCCTCAAAGCGGGGGAGGGGAGGAGTCGTAT
CCCTTTAACCGATCTCGTTTCACACAAGCCTCTCGTTTTTCGCGACGCGC
ACGAGCATATTCGTTCCTTGCTTAAACCGGATTCTAGCCCCCACTTTTAT
TTTATTTTATTTTATTTTTCTGTTCTTCCCTTCACCTCCGGTGTGTATTT
GACGCGACGCCCCGTACTGTCTTATCAGGGATGCCTTACAGGACTTGGAA
ACCACGACAACGAGGGTGGAACGCATGATGCGCCGATTGCACATGCGGCT
CGACACCATGAGCCTGAAGGACACCAGCCATTCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig107675:81..1717+

>mRNA_H-elongata_contig107675.630.1 ID=mRNA_H-elongata_contig107675.630.1|Name=mRNA_H-elongata_contig107675.630.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1128bp|location=Sequence derived from alignment at H-elongata_contig107675:81..1717+ (Himanthalia elongata Himel1 dioecious)
ATGACGCGGCTGTTGGTGGAAGGAGGGGCCAGCCTGGACGCGGTGGACGT
GAATGGCAACGGGGTGGTTCACGCGGCGGTGTGCGACTCGCCCGCCGTAT
TAGCGATCCTCATTGACAACGGAGCGGACGTAACCGTTGCCAACAGCCAC
GATCTCACGCCGAAGATGACGCGGCTGTTGGTGGAAGGAGGGGCCAGCCT
GGACGCGGTGGACGTGAATGGCAACGGGGTGGTTCACGCGGCGGTGTGCG
ACTCGCCCGCCGTATTAGCGATCCTCATTGACAACGGAGCGGACGTAACC
GTTGCCAACAGCCACGATCTCACGCCGAAGGGATTGTGTGAGCAATATTG
CCCACCGCGCTTGAGGGGGCGGATGCTTCAGCTCCTGAAGGAGGCGATGC
TAGCGCGGGCGAAGGAAACGGCACGGAAGGAGCGCTTAACCGAGAGCCAG
GGATTGTGTGAGCAATATTGCCCACCGCGCTTGAGGGGGCGGATGCTTCA
GCTCCTGAAGGAGGCGATGCTAGCGCGGGCGAAGGAAACGGCACGGAAGG
AGCGCTTAACCGAGAGCCAGTTGAATATCGAGGCGGTGTACCACCAGCTC
GCGATGCTGCGGTCGAAGCTAGCGGCGACGGCAGCGGCGCGGACCGAAGT
TCCGCCGTCTGAAGCAGCGGCGGGCGCGCAGACGGAAAATTCCCTTCTGA
CTCTCGTTGAGGCCAACGTGCGCGTGGTGGAATACCAGCGTTGAATATCG
AGGCGGTGTACCACCAGCTCGCGATGCTGCGGTCGAAGCTAGCGGCGACG
GCAGCGGCGCGGACCGAAGTTCCGCCGTCTGAAGCAGCGGCGGGCGCGCA
GACGGAAAATTCCCTTCTGACTCTCGTTGAGGCCAACGTGCGCGTGGTGG
AATACCAGCGGGATGCCTTACAGGACTTGGAAACCACGACAACGAGGGTG
GAACGCATGATGCGCCGATTGCACATGCGGCTCGACACCATGAGCCTGAA
GGACACCAGCCATTCCTGAGGATGCCTTACAGGACTTGGAAACCACGACA
ACGAGGGTGGAACGCATGATGCGCCGATTGCACATGCGGCTCGACACCAT
GAGCCTGAAGGACACCAGCCATTCCTGA
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