mRNA_H-elongata_contig10762.627.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10762.627.1
Unique NamemRNA_H-elongata_contig10762.627.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10762.627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10762contigH-elongata_contig10762:3188..3837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size312
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10762.627.1prot_H-elongata_contig10762.627.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10762 3188..3828 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929605.9668686-CDS-H-elongata_contig10762:3187..32391622929605.9668686-CDS-H-elongata_contig10762:3187..3239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10762 3188..3239 -
1691679088.7783632-CDS-H-elongata_contig10762:3187..32391691679088.7783632-CDS-H-elongata_contig10762:3187..3239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10762 3188..3239 -
1622929605.98573-CDS-H-elongata_contig10762:3568..38281622929605.98573-CDS-H-elongata_contig10762:3568..3828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10762 3569..3828 -
1691679088.8009632-CDS-H-elongata_contig10762:3568..38281691679088.8009632-CDS-H-elongata_contig10762:3568..3828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10762 3569..3828 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929606.0048158-UTR-H-elongata_contig10762:3828..38371622929606.0048158-UTR-H-elongata_contig10762:3828..3837Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10762 3829..3837 -
1691679088.809804-UTR-H-elongata_contig10762:3828..38371691679088.809804-UTR-H-elongata_contig10762:3828..3837Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10762 3829..3837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10762.627.1

>prot_H-elongata_contig10762.627.1 ID=prot_H-elongata_contig10762.627.1|Name=mRNA_H-elongata_contig10762.627.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MPTDANTTPAIAAQQLDGTSTRQQSGGSTEAMWSAPGDGDGSDTDPSNDA
ARGGGGAAPARDVNWREADKGESESRVGKKRTRVEGRGSSAAQRAAANEA
CKGI
back to top

mRNA from alignment at H-elongata_contig10762:3188..3837-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10762.627.1 ID=mRNA_H-elongata_contig10762.627.1|Name=mRNA_H-elongata_contig10762.627.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=650bp|location=Sequence derived from alignment at H-elongata_contig10762:3188..3837- (Himanthalia elongata Himel1 dioecious)
CTCAAAACCATGCCGACTGACGCCAACACCACGCCGGCCATCGCCGCACA
GCAGCTTGACGGCACCTCCACGCGACAGCAATCCGGAGGGAGCACGGAGG
CAATGTGGAGCGCTCCTGGTGATGGTGACGGATCAGACACAGACCCTAGT
AATGATGCTGCGAGAGGCGGCGGGGGAGCTGCTCCGGCGCGAGACGTAAA
CTGGCGAGAAGCAGACAAGGGGGAGAGCGAGAGTCGCGTGGGAAAGAAGA
GGACGCGAGTTGAAGGAAGGTGAGATTGTCGCTTGGGCGATCGTGCCTAG
GAGTTGGCGTCCTTTGCCGCACGCAAGGCGAAAGTGTTGTTGTACATTGA
TGTGCCGCTAGTGAAATCCGCCCTAGTTATGAAATTACCGACATCGACCG
ATCAAGTCTAAAACGCACACCCAGGGCCTGAGTTGCTGCTTGCTGCTGGA
CGTTTGGTGCCTAGATTGCTGCCGCATTCAACGACTATTCAATTTCAACC
AGCTTTCCCCACCCGCGACAAAGAAAGGCCCCTTCGCTTTTGAATTTCCC
CACCGCACTCCACCTTTGCTGGTGCAACGTACGGAAACGTCCATACAGAG
GTAGCTCGGCGGCGCAAAGGGCAGCTGCGAATGAGGCATGTAAGGGCATA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig10762:3188..3837-

>mRNA_H-elongata_contig10762.627.1 ID=mRNA_H-elongata_contig10762.627.1|Name=mRNA_H-elongata_contig10762.627.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig10762:3188..3837- (Himanthalia elongata Himel1 dioecious)
ATGCCGACTGACGCCAACACCACGCCGGCCATCGCCGCACAGCAGCTTGA
CGGCACCTCCACGCGACAGCAATCCGGAGGGAGCACGGAGGCAATGTGGA
GCGCTCCTGGTGATGGTGACGGATCAGACACAGACCCTAGTAATGATGCT
GCGAGAGGCGGCGGGGGAGCTGCTCCGGCGCGAGACGTAAACTGGCGAGA
AGCAGACAAGGGGGAGAGCGAGAGTCGCGTGGGAAAGAAGAGGACGCGAG
TTGAAGGAAGATGCCGACTGACGCCAACACCACGCCGGCCATCGCCGCAC
AGCAGCTTGACGGCACCTCCACGCGACAGCAATCCGGAGGGAGCACGGAG
GCAATGTGGAGCGCTCCTGGTGATGGTGACGGATCAGACACAGACCCTAG
TAATGATGCTGCGAGAGGCGGCGGGGGAGCTGCTCCGGCGCGAGACGTAA
ACTGGCGAGAAGCAGACAAGGGGGAGAGCGAGAGTCGCGTGGGAAAGAAG
AGGACGCGAGTTGAAGGAAGAGGTAGCTCGGCGGCGCAAAGGGCAGCTGC
GAATGAGGCATGTAAGGGCATAAGGTAGCTCGGCGGCGCAAAGGGCAGCT
GCGAATGAGGCATGTAAGGGCATA
back to top