mRNA_H-elongata_contig10757.624.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: D7FPL9_ECTSI (Polyribonucleotide nucleotidyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPL9_ECTSI) HSP 1 Score: 296 bits (759), Expect = 8.720e-93 Identity = 159/226 (70.35%), Postives = 181/226 (80.09%), Query Frame = 1
Query: 1 TVLCPLQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVDRLRGLIKLVK-----GKSSEPGERPSRQKLVEAENEEMQHAGQ 663
T + +QLDVKLRGGVPL +L EAL+ AKAGR +VL AMK+AI +PN LKDRAPRCEIV FE DRKKD+VGFQGQT+KGIEE +GV+LDLS EGRAVVF+D+A SV AV+LVRELVHEIEEGD + GTV TVHEYGCLVELLRNQQGLLHVSNM + PAPPARD+VKVGD V VRV+EVDRLRGLIKL +S+PG+ R V E+EEMQ A Q
Sbjct: 539 TGITAIQLDVKLRGGVPLPVLSEALRVAKAGRAQVLKAMKKAIGSPNGTLKDRAPRCEIVHFEADRKKDLVGFQGQTMKGIEENFGVALDLSTEGRAVVFSDNAQSVAGAVRLVRELVHEIEEGDFYEGTVTTVHEYGCLVELLRNQQGLLHVSNMTDKLPAPPARDIVKVGDTVGVRVMEVDRLRGLIKLASESHPSSSTSKPGQ-GRRSPTVAGEDEEMQKASQ 763
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: A0A7S3PD14_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PD14_9STRA) HSP 1 Score: 137 bits (346), Expect = 6.840e-37 Identity = 78/197 (39.59%), Postives = 121/197 (61.42%), Query Frame = 1
Query: 16 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAIT---APNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPP--------ARDLVKVGDRVDVRVVEVDRLRGLIKL 573
LQLDVK V IL ALK AKAGR +L M+ + P + K AP E+V+F+ RK+D++G G L+ +E++Y VS+DL+ EGR +++ +D VKKA V +LV +++EG+I+ GT+ + ++G +VELLRN++ LLHVS + + + RD +KVG +DV+ + VD ++G IK+
Sbjct: 15 LQLDVK--EPVETRILSAALKLAKAGRNVILDEMEMKLERGFVPRSQPKMSAPAVEVVKFDASRKRDLIGPGGVVLRQLEDRYSVSIDLTQEGRCLLYGEDRGLVKKARSTVMDLVADVQEGEIYEGTIVELKDFGAVVELLRNKEALLHVSELTDESEVKDHPEGIAGFVRDNLKVGQTIDVQCIGVDPIQGSIKV 209
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: B8C7U5_THAPS (Polyribonucleotide nucleotidyltransferase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7U5_THAPS) HSP 1 Score: 142 bits (358), Expect = 1.400e-35 Identity = 79/198 (39.90%), Postives = 128/198 (64.65%), Query Frame = 1
Query: 16 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITA--PNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPA------RDLVKVGDRVDVRVVEVDRLRGLIKLVKGK 585
+QLDVK V + ++ AL AK GR +LAAM + + P +K APR E+V+F+P+RK+D++G G L+ +E+++ VSLDLS +G ++F +V A +++ +LV ++EEG ++ GTV + ++G +VELLRN++GLLHVS +A+ T P RD +KVGD+++V ++D ++G IKL + K
Sbjct: 457 MQLDVK--NPVTMKVIASALSLAKDGRNAILAAMGKEVGGLHPRRSMKSTAPRIEVVKFDPNRKRDLIGPGGSVLRQLEDRFNVSLDLSQDG--LIFGA-LQAVSGAKRVIMDLVADVEEGGVYEGTVIEIKDFGAVVELLRNKEGLLHVSELADKTEKHPEGNMGLLRDHLKVGDKIEVLCTKIDHVQGSIKLSRKK 649
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: A0A645FZL9_9ZZZZ (Polyribonucleotide nucleotidyltransferase n=1 Tax=bioreactor metagenome TaxID=1076179 RepID=A0A645FZL9_9ZZZZ) HSP 1 Score: 134 bits (336), Expect = 3.550e-35 Identity = 76/212 (35.85%), Postives = 130/212 (61.32%), Query Frame = 1
Query: 16 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVDRLRGLIKLVKGKSSEPGERPSRQKLVEAENEEMQ 651
+Q+D+K+ GG+ IL AL+ AK+GR +L M + ++ P EL APR + +PD+ +D++G G+T+K I ++ GV++D+ +G+ + A D ++ +KAV+++ LV E+E G I+ G V + +G VE+L ++GL+H+S +A A D+VKVGD + V+VVE+DR +G + L SR++L++AE + Q
Sbjct: 40 IQMDIKI-GGINKAILTAALEQAKSGRKHILGKMLEVLSQPRSELSPYAPRIITMEIDPDKIRDVIGPGGKTIKKIIDETGVTIDIEDDGKVFIAAVDVEAGQKAVRIIETLVREVEVGGIYLGKVTRLMNFGAFVEILPGKEGLVHISQLALERVAK-VEDVVKVGDEIMVKVVEIDR-QGRVNL------------SRKELLKAEQDNKQ 236
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: A0A3D3QRM9_9FIRM (Polyribonucleotide nucleotidyltransferase (Fragment) n=2 Tax=Tissierellales TaxID=1737405 RepID=A0A3D3QRM9_9FIRM) HSP 1 Score: 132 bits (332), Expect = 1.480e-34 Identity = 64/178 (35.96%), Postives = 112/178 (62.92%), Query Frame = 1
Query: 16 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVD 549
+Q+D+K+ G + IL EAL+ A+ GR +L M++ I P EL APR ++ PDR +DI+G G+ + I ++ GV +D+ +GR + ++D + KKA++++ ++V E+E G+I++G V + +G VE+L ++GL+H+S +A D+VKVGD + V+V+E+D
Sbjct: 42 IQMDIKIPG-IDEPILKEALEKARIGRLYILDKMEETIKTPRTELSPYAPRIHTLQINPDRIRDIIGPGGKVINRIIDETGVKIDIEDDGRVAIVSNDGEGAKKAIQMIMDIVKEVEAGEIYTGKVTKIMNFGAFVEVLNGKEGLVHISQLAKER-VNKVEDVVKVGDEITVKVMEID 217
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: A0A1F7NTH0_9BACT (Polyribonucleotide nucleotidyltransferase n=2 Tax=unclassified Candidatus Rokubacteria TaxID=2760815 RepID=A0A1F7NTH0_9BACT) HSP 1 Score: 135 bits (340), Expect = 5.110e-33 Identity = 71/178 (39.89%), Postives = 116/178 (65.17%), Query Frame = 1
Query: 16 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVD 549
LQ+D+K+ GGV L I+ EALK A+ R VLA M++AI P EL APR ++ ++ ++I+G G+ ++GI+E+ G +D+ +GR VF+ D +SV+KA+ +++++ E+E I+ G VK + E+G VE+L N +GLLH+S +A + +D++ GD V V+V+EVD
Sbjct: 502 LQMDIKI-GGVSLEIMREALKQAREARLSVLAKMREAIEKPRTELSPYAPRFVTIKIRTEKIREIIGPGGKVIRGIQEQTGTKIDVEDDGRVTVFSPDNESVQKALAIIQDICREVELDRIYLGKVKKIVEFGAFVEVLPNTEGLLHISQIAESR-IRSVQDVLTEGDEVLVKVIEVD 677
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: UPI0019CD9616 (Polyribonucleotide nucleotidyltransferase n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=UPI0019CD9616) HSP 1 Score: 135 bits (339), Expect = 6.930e-33 Identity = 68/179 (37.99%), Postives = 119/179 (66.48%), Query Frame = 1
Query: 16 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVDR 552
+Q+D+K+ G+ G+L +AL+ A+ GR +L M++ + AP E+ APR V+ +PD+ + I+G G+T+KGI ++ G S+D++ +G V + D+++VK+A++++ L E E G I+ GT+K + ++G VE+L N + LLHVS +A+ PA D++K GD +DV+V+ V+R
Sbjct: 506 IQMDIKI-AGLERGVLEQALQQAREGRLHILGKMQETLNAPRVEINRWAPRITTVKVKPDQIRIIIGPGGKTIKGIIDQTGCSVDVNDDGTVAVASADSEAVKRAIQIIEGLTAEPEVGRIYRGTIKRLVDFGAFVEILPNNEALLHVSEIAHERIENPA-DVLKEGDEIDVKVISVER 682
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: A0A353V7P0_9BACT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A353V7P0_9BACT) HSP 1 Score: 134 bits (337), Expect = 1.310e-32 Identity = 71/178 (39.89%), Postives = 115/178 (64.61%), Query Frame = 1
Query: 16 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVD 549
LQ+D+K+ GV L I+ EALK A+ R VLA M++AI P EL APR ++ ++ ++I+G G+ ++GI+E+ G +D+ +GR VF+ D +SV+KA+ +++++ E+E I+ G VK + E+G VE+L N +GLLH+S +A T +D++ GD V V+V+EVD
Sbjct: 502 LQMDIKI-AGVSLEIMREALKQAREARLLVLAKMREAIEKPRPELSPYAPRFVTIKIRTEKIREIIGPGGKVIRGIQEQTGTKIDVEDDGRVTVFSPDNESVQKALAIIQDICREVELDRIYLGKVKKIVEFGAFVEVLPNTEGLLHISQIAETR-IRSVQDVLSEGDEVLVKVIEVD 677
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: A0A7X8C2S9_9LACT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Globicatella sulfidifaciens TaxID=136093 RepID=A0A7X8C2S9_9LACT) HSP 1 Score: 128 bits (322), Expect = 1.840e-32 Identity = 63/178 (35.39%), Postives = 108/178 (60.67%), Query Frame = 1
Query: 16 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVD 549
LQ+D+K++G + IL EAL+ AK R +L + + P EL AP+ E++ +PD+ K ++G G+T+ GI + GV +D+ G V + DA+ ++KA+ ++ LV E+E G+ + G V+ + ++G VE+L + GLLH+S + + D++KVGD V V+V+E+D
Sbjct: 110 LQMDIKIQG-ITEAILTEALEQAKKARAEILDELISTLAEPRKELSPYAPKIELITIDPDKIKVVIGRGGETINGIIDATGVKIDIDQSGAISVASSDAEMIQKAIDMINALVKEVEVGETYEGIVRRIEKFGAFVEVLPGKDGLLHISELEHRR-VNNVEDVLKVGDTVQVKVIEID 285
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: A0A4Q5XCR5_9DELT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A4Q5XCR5_9DELT) HSP 1 Score: 132 bits (333), Expect = 4.870e-32 Identity = 67/179 (37.43%), Postives = 118/179 (65.92%), Query Frame = 1
Query: 16 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVDR 552
+Q+D+K+ G + +L +AL+ A+AGR +L M + ++ P E+ APR V+ +PD+ + I+G G+T+KGI ++ G S+D++ +G V + D+D+VK+A++++ L E E G I+ GT+K + ++G VE+L N + LLHVS +A+ PA D++K GD ++V+V+ V+R
Sbjct: 506 IQMDIKIEG-LERRVLEQALEQARAGRVHILGKMAETLSVPRVEINRWAPRITTVKVKPDQIRIIIGPGGKTIKGIIDQTGCSVDVNDDGTVAVASADSDAVKRAIQIIEGLTAEPEVGRIYKGTIKRLVDFGAFVEILPNNEALLHVSEIAHERIENPA-DVLKEGDEIEVKVISVER 682 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10757.624.1 >prot_H-elongata_contig10757.624.1 ID=prot_H-elongata_contig10757.624.1|Name=mRNA_H-elongata_contig10757.624.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=222bp TVLCPLQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELback to top mRNA from alignment at H-elongata_contig10757:6045..8953- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10757.624.1 ID=mRNA_H-elongata_contig10757.624.1|Name=mRNA_H-elongata_contig10757.624.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2909bp|location=Sequence derived from alignment at H-elongata_contig10757:6045..8953- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10757:6045..8953- >mRNA_H-elongata_contig10757.624.1 ID=mRNA_H-elongata_contig10757.624.1|Name=mRNA_H-elongata_contig10757.624.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1332bp|location=Sequence derived from alignment at H-elongata_contig10757:6045..8953- (Himanthalia elongata Himel1 dioecious)back to top |