mRNA_H-elongata_contig10757.624.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10757.624.1
Unique NamemRNA_H-elongata_contig10757.624.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: D7FPL9_ECTSI (Polyribonucleotide nucleotidyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPL9_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 8.720e-93
Identity = 159/226 (70.35%), Postives = 181/226 (80.09%), Query Frame = 1
Query:    1 TVLCPLQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVDRLRGLIKLVK-----GKSSEPGERPSRQKLVEAENEEMQHAGQ 663
            T +  +QLDVKLRGGVPL +L EAL+ AKAGR +VL AMK+AI +PN  LKDRAPRCEIV FE DRKKD+VGFQGQT+KGIEE +GV+LDLS EGRAVVF+D+A SV  AV+LVRELVHEIEEGD + GTV TVHEYGCLVELLRNQQGLLHVSNM +  PAPPARD+VKVGD V VRV+EVDRLRGLIKL         +S+PG+   R   V  E+EEMQ A Q
Sbjct:  539 TGITAIQLDVKLRGGVPLPVLSEALRVAKAGRAQVLKAMKKAIGSPNGTLKDRAPRCEIVHFEADRKKDLVGFQGQTMKGIEENFGVALDLSTEGRAVVFSDNAQSVAGAVRLVRELVHEIEEGDFYEGTVTTVHEYGCLVELLRNQQGLLHVSNMTDKLPAPPARDIVKVGDTVGVRVMEVDRLRGLIKLASESHPSSSTSKPGQ-GRRSPTVAGEDEEMQKASQ 763          
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: A0A7S3PD14_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PD14_9STRA)

HSP 1 Score: 137 bits (346), Expect = 6.840e-37
Identity = 78/197 (39.59%), Postives = 121/197 (61.42%), Query Frame = 1
Query:   16 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAIT---APNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPP--------ARDLVKVGDRVDVRVVEVDRLRGLIKL 573
            LQLDVK    V   IL  ALK AKAGR  +L  M+  +     P  + K  AP  E+V+F+  RK+D++G  G  L+ +E++Y VS+DL+ EGR +++ +D   VKKA   V +LV +++EG+I+ GT+  + ++G +VELLRN++ LLHVS + + +             RD +KVG  +DV+ + VD ++G IK+
Sbjct:   15 LQLDVK--EPVETRILSAALKLAKAGRNVILDEMEMKLERGFVPRSQPKMSAPAVEVVKFDASRKRDLIGPGGVVLRQLEDRYSVSIDLTQEGRCLLYGEDRGLVKKARSTVMDLVADVQEGEIYEGTIVELKDFGAVVELLRNKEALLHVSELTDESEVKDHPEGIAGFVRDNLKVGQTIDVQCIGVDPIQGSIKV 209          
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: B8C7U5_THAPS (Polyribonucleotide nucleotidyltransferase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7U5_THAPS)

HSP 1 Score: 142 bits (358), Expect = 1.400e-35
Identity = 79/198 (39.90%), Postives = 128/198 (64.65%), Query Frame = 1
Query:   16 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITA--PNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPA------RDLVKVGDRVDVRVVEVDRLRGLIKLVKGK 585
            +QLDVK    V + ++  AL  AK GR  +LAAM + +    P   +K  APR E+V+F+P+RK+D++G  G  L+ +E+++ VSLDLS +G  ++F     +V  A +++ +LV ++EEG ++ GTV  + ++G +VELLRN++GLLHVS +A+ T   P       RD +KVGD+++V   ++D ++G IKL + K
Sbjct:  457 MQLDVK--NPVTMKVIASALSLAKDGRNAILAAMGKEVGGLHPRRSMKSTAPRIEVVKFDPNRKRDLIGPGGSVLRQLEDRFNVSLDLSQDG--LIFGA-LQAVSGAKRVIMDLVADVEEGGVYEGTVIEIKDFGAVVELLRNKEGLLHVSELADKTEKHPEGNMGLLRDHLKVGDKIEVLCTKIDHVQGSIKLSRKK 649          
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: A0A645FZL9_9ZZZZ (Polyribonucleotide nucleotidyltransferase n=1 Tax=bioreactor metagenome TaxID=1076179 RepID=A0A645FZL9_9ZZZZ)

HSP 1 Score: 134 bits (336), Expect = 3.550e-35
Identity = 76/212 (35.85%), Postives = 130/212 (61.32%), Query Frame = 1
Query:   16 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVDRLRGLIKLVKGKSSEPGERPSRQKLVEAENEEMQ 651
            +Q+D+K+ GG+   IL  AL+ AK+GR  +L  M + ++ P  EL   APR   +  +PD+ +D++G  G+T+K I ++ GV++D+  +G+  + A D ++ +KAV+++  LV E+E G I+ G V  +  +G  VE+L  ++GL+H+S +A    A    D+VKVGD + V+VVE+DR +G + L            SR++L++AE +  Q
Sbjct:   40 IQMDIKI-GGINKAILTAALEQAKSGRKHILGKMLEVLSQPRSELSPYAPRIITMEIDPDKIRDVIGPGGKTIKKIIDETGVTIDIEDDGKVFIAAVDVEAGQKAVRIIETLVREVEVGGIYLGKVTRLMNFGAFVEILPGKEGLVHISQLALERVAK-VEDVVKVGDEIMVKVVEIDR-QGRVNL------------SRKELLKAEQDNKQ 236          
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: A0A3D3QRM9_9FIRM (Polyribonucleotide nucleotidyltransferase (Fragment) n=2 Tax=Tissierellales TaxID=1737405 RepID=A0A3D3QRM9_9FIRM)

HSP 1 Score: 132 bits (332), Expect = 1.480e-34
Identity = 64/178 (35.96%), Postives = 112/178 (62.92%), Query Frame = 1
Query:   16 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVD 549
            +Q+D+K+ G +   IL EAL+ A+ GR  +L  M++ I  P  EL   APR   ++  PDR +DI+G  G+ +  I ++ GV +D+  +GR  + ++D +  KKA++++ ++V E+E G+I++G V  +  +G  VE+L  ++GL+H+S +A         D+VKVGD + V+V+E+D
Sbjct:   42 IQMDIKIPG-IDEPILKEALEKARIGRLYILDKMEETIKTPRTELSPYAPRIHTLQINPDRIRDIIGPGGKVINRIIDETGVKIDIEDDGRVAIVSNDGEGAKKAIQMIMDIVKEVEAGEIYTGKVTKIMNFGAFVEVLNGKEGLVHISQLAKER-VNKVEDVVKVGDEITVKVMEID 217          
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: A0A1F7NTH0_9BACT (Polyribonucleotide nucleotidyltransferase n=2 Tax=unclassified Candidatus Rokubacteria TaxID=2760815 RepID=A0A1F7NTH0_9BACT)

HSP 1 Score: 135 bits (340), Expect = 5.110e-33
Identity = 71/178 (39.89%), Postives = 116/178 (65.17%), Query Frame = 1
Query:   16 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVD 549
            LQ+D+K+ GGV L I+ EALK A+  R  VLA M++AI  P  EL   APR   ++   ++ ++I+G  G+ ++GI+E+ G  +D+  +GR  VF+ D +SV+KA+ +++++  E+E   I+ G VK + E+G  VE+L N +GLLH+S +A +      +D++  GD V V+V+EVD
Sbjct:  502 LQMDIKI-GGVSLEIMREALKQAREARLSVLAKMREAIEKPRTELSPYAPRFVTIKIRTEKIREIIGPGGKVIRGIQEQTGTKIDVEDDGRVTVFSPDNESVQKALAIIQDICREVELDRIYLGKVKKIVEFGAFVEVLPNTEGLLHISQIAESR-IRSVQDVLTEGDEVLVKVIEVD 677          
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: UPI0019CD9616 (Polyribonucleotide nucleotidyltransferase n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=UPI0019CD9616)

HSP 1 Score: 135 bits (339), Expect = 6.930e-33
Identity = 68/179 (37.99%), Postives = 119/179 (66.48%), Query Frame = 1
Query:   16 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVDR 552
            +Q+D+K+  G+  G+L +AL+ A+ GR  +L  M++ + AP  E+   APR   V+ +PD+ + I+G  G+T+KGI ++ G S+D++ +G   V + D+++VK+A++++  L  E E G I+ GT+K + ++G  VE+L N + LLHVS +A+     PA D++K GD +DV+V+ V+R
Sbjct:  506 IQMDIKI-AGLERGVLEQALQQAREGRLHILGKMQETLNAPRVEINRWAPRITTVKVKPDQIRIIIGPGGKTIKGIIDQTGCSVDVNDDGTVAVASADSEAVKRAIQIIEGLTAEPEVGRIYRGTIKRLVDFGAFVEILPNNEALLHVSEIAHERIENPA-DVLKEGDEIDVKVISVER 682          
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: A0A353V7P0_9BACT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A353V7P0_9BACT)

HSP 1 Score: 134 bits (337), Expect = 1.310e-32
Identity = 71/178 (39.89%), Postives = 115/178 (64.61%), Query Frame = 1
Query:   16 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVD 549
            LQ+D+K+  GV L I+ EALK A+  R  VLA M++AI  P  EL   APR   ++   ++ ++I+G  G+ ++GI+E+ G  +D+  +GR  VF+ D +SV+KA+ +++++  E+E   I+ G VK + E+G  VE+L N +GLLH+S +A T      +D++  GD V V+V+EVD
Sbjct:  502 LQMDIKI-AGVSLEIMREALKQAREARLLVLAKMREAIEKPRPELSPYAPRFVTIKIRTEKIREIIGPGGKVIRGIQEQTGTKIDVEDDGRVTVFSPDNESVQKALAIIQDICREVELDRIYLGKVKKIVEFGAFVEVLPNTEGLLHISQIAETR-IRSVQDVLSEGDEVLVKVIEVD 677          
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: A0A7X8C2S9_9LACT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Globicatella sulfidifaciens TaxID=136093 RepID=A0A7X8C2S9_9LACT)

HSP 1 Score: 128 bits (322), Expect = 1.840e-32
Identity = 63/178 (35.39%), Postives = 108/178 (60.67%), Query Frame = 1
Query:   16 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVD 549
            LQ+D+K++G +   IL EAL+ AK  R  +L  +   +  P  EL   AP+ E++  +PD+ K ++G  G+T+ GI +  GV +D+   G   V + DA+ ++KA+ ++  LV E+E G+ + G V+ + ++G  VE+L  + GLLH+S + +        D++KVGD V V+V+E+D
Sbjct:  110 LQMDIKIQG-ITEAILTEALEQAKKARAEILDELISTLAEPRKELSPYAPKIELITIDPDKIKVVIGRGGETINGIIDATGVKIDIDQSGAISVASSDAEMIQKAIDMINALVKEVEVGETYEGIVRRIEKFGAFVEVLPGKDGLLHISELEHRR-VNNVEDVLKVGDTVQVKVIEID 285          
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: A0A4Q5XCR5_9DELT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A4Q5XCR5_9DELT)

HSP 1 Score: 132 bits (333), Expect = 4.870e-32
Identity = 67/179 (37.43%), Postives = 118/179 (65.92%), Query Frame = 1
Query:   16 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVDR 552
            +Q+D+K+ G +   +L +AL+ A+AGR  +L  M + ++ P  E+   APR   V+ +PD+ + I+G  G+T+KGI ++ G S+D++ +G   V + D+D+VK+A++++  L  E E G I+ GT+K + ++G  VE+L N + LLHVS +A+     PA D++K GD ++V+V+ V+R
Sbjct:  506 IQMDIKIEG-LERRVLEQALEQARAGRVHILGKMAETLSVPRVEINRWAPRITTVKVKPDQIRIIIGPGGKTIKGIIDQTGCSVDVNDDGTVAVASADSDAVKRAIQIIEGLTAEPEVGRIYKGTIKRLVDFGAFVEILPNNEALLHVSEIAHERIENPA-DVLKEGDEIEVKVISVER 682          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPL9_ECTSI8.720e-9370.35Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]
A0A7S3PD14_9STRA6.840e-3739.59Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B8C7U5_THAPS1.400e-3539.90Polyribonucleotide nucleotidyltransferase (Fragmen... [more]
A0A645FZL9_9ZZZZ3.550e-3535.85Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A3D3QRM9_9FIRM1.480e-3435.96Polyribonucleotide nucleotidyltransferase (Fragmen... [more]
A0A1F7NTH0_9BACT5.110e-3339.89Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]
UPI0019CD96166.930e-3337.99Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A353V7P0_9BACT1.310e-3239.89Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A7X8C2S9_9LACT1.840e-3235.39Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A4Q5XCR5_9DELT4.870e-3237.43Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10757contigH-elongata_contig10757:6045..8953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score299.7
Seed ortholog evalue1.2e-78
Seed eggNOG ortholog2880.D7FPL9
Preferred namePNPT1
KEGG rclassRC02795
KEGG koko:K00962,ko:K17491
KEGG ReactionR00437,R00438,R00439,R00440
KEGG Pathwayko00230,ko00240,ko03018,ko04212,ko04922,map00230,map00240,map03018,map04212,map04922
KEGG ModuleM00394
GOsGO:0000175,GO:0000177,GO:0000178,GO:0000957,GO:0000958,GO:0000959,GO:0000960,GO:0000962,GO:0000963,GO:0000964,GO:0000965,GO:0000966,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005783,GO:0005789,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006810,GO:0006839,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007049,GO:0007050,GO:0007346,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008408,GO:0009056,GO:0009057,GO:0009653,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0012505,GO:0015931,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0022402,GO:0022607,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031984,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033554,GO:0034046,GO:0034097,GO:0034599,GO:0034641,GO:0034655,GO:0035198,GO:0035456,GO:0035458,GO:0035927,GO:0035928,GO:0040008,GO:0042175,GO:0042221,GO:0042788,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043457,GO:0043467,GO:0043487,GO:0043488,GO:0043631,GO:0043632,GO:0043633,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044528,GO:0045025,GO:0045786,GO:0045926,GO:0045930,GO:0045935,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051029,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051716,GO:0051726,GO:0055085,GO:0060255,GO:0061013,GO:0061014,GO:0061980,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070206,GO:0070207,GO:0070584,GO:0070717,GO:0070887,GO:0071042,GO:0071047,GO:0071310,GO:0071345,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071850,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090342,GO:0090501,GO:0090503,GO:0090615,GO:0090616,GO:0097159,GO:0097222,GO:0098798,GO:0098827,GO:0140053,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1903313,GO:1905354,GO:1990542,GO:1990904,GO:2000625,GO:2000627,GO:2000628,GO:2000630,GO:2000772
EggNOG free text desc.polyribonucleotide nucleotidyltransferase activity
EggNOG OGsCOG1185@1,KOG1067@2759
EC2.7.7.8
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03016,ko03019,ko03400
Hectar predicted targeting categoryother localisation
Exons5
Model size666
Cds size666
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10757.624.1prot_H-elongata_contig10757.624.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10757 6045..8953 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929605.5308554-CDS-H-elongata_contig10757:6044..61591622929605.5308554-CDS-H-elongata_contig10757:6044..6159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10757 6045..6159 -
1691679088.5787642-CDS-H-elongata_contig10757:6044..61591691679088.5787642-CDS-H-elongata_contig10757:6044..6159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10757 6045..6159 -
1622929605.5503142-CDS-H-elongata_contig10757:6541..67231622929605.5503142-CDS-H-elongata_contig10757:6541..6723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10757 6542..6723 -
1691679088.5919507-CDS-H-elongata_contig10757:6541..67231691679088.5919507-CDS-H-elongata_contig10757:6541..6723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10757 6542..6723 -
1622929605.5710094-CDS-H-elongata_contig10757:7308..74491622929605.5710094-CDS-H-elongata_contig10757:7308..7449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10757 7309..7449 -
1691679088.6021163-CDS-H-elongata_contig10757:7308..74491691679088.6021163-CDS-H-elongata_contig10757:7308..7449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10757 7309..7449 -
1622929605.5932457-CDS-H-elongata_contig10757:7854..79801622929605.5932457-CDS-H-elongata_contig10757:7854..7980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10757 7855..7980 -
1691679088.609625-CDS-H-elongata_contig10757:7854..79801691679088.609625-CDS-H-elongata_contig10757:7854..7980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10757 7855..7980 -
1622929605.6093676-CDS-H-elongata_contig10757:8851..89531622929605.6093676-CDS-H-elongata_contig10757:8851..8953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10757 8852..8953 -
1691679088.6171772-CDS-H-elongata_contig10757:8851..89531691679088.6171772-CDS-H-elongata_contig10757:8851..8953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10757 8852..8953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10757.624.1

>prot_H-elongata_contig10757.624.1 ID=prot_H-elongata_contig10757.624.1|Name=mRNA_H-elongata_contig10757.624.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=222bp
TVLCPLQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYEL
KDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVF
ADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGL
LHVSNMANTTPAPPARDLVKVGDRVDVRVVEVDRLRGLIKLVKGKSSEPG
ERPSRQKLVEAENEEMQHAGQ*
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mRNA from alignment at H-elongata_contig10757:6045..8953-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10757.624.1 ID=mRNA_H-elongata_contig10757.624.1|Name=mRNA_H-elongata_contig10757.624.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2909bp|location=Sequence derived from alignment at H-elongata_contig10757:6045..8953- (Himanthalia elongata Himel1 dioecious)
ACCGTGTTGTGCCCTCTTCAGCTGGACGTGAAGCTGCGGGGAGGCGTTCC TTTGGGCATCCTGGGCGAGGCGCTCAAGACGGCTAAGGCGGGGAGAACAA GGGTAAGGGAGGGTTGACATGCGACAAGCAGGGGCTTAGGTCATCCGGCC GAGTAAGGGTCAAAAGTCAAGAGACAAGAGTCAATAATTAGGACAACCGC AGACGAATAGGGATAGAGAGAAAATAACATAACCCCCCCAGGCTGTCGCA GTCTATCTGTCTATCTCCCTCTTCGTGTCTATCTTGACCTTCGTGTCTAT CTTGACCCGCCTTTTTTTTAGTATATATTTTCTCTCTTTTCTGCCCCTTT ACCTTATTTTCTCTATATATTTTCTCTATATATTTTCTCTCCATCTGTCT ACTCTACCCCCCACTCTTTCATTGTCGTTGTTGACGTGCTTGCTATCTTG CTATCTTGCTACATTATCTATAACGTTTTGGGGGTAGAGGGGTGGACGAA CCGTTCAGACGGCTTTTCTCCGCGGTAACGATGGCCCGATTTCGTGCGCT GACCGCTCAGAGCTGTAAATATGTACCAGTGGATCGTGTTTTGGCTGCGC GCCCCCGTGTATCACTTTCTCCGCAACTCGTCGCGTGCCATGTCCTTGTG TCCCTCCCCTCCCCCTCCTCTCCCTTAACACCCCCCCCTTCCGTGTGGTG CCGTGTGGTGCCGTGAGTGGAACTCGCGAGCACCGTGGGAACTCGTGACC CGTACACTACAATGATCGAATGACGTGGAAACATCCCAAAGAGCGGAACT CCGCAATCTCTCCTTCCCGGGATGACGTCATGCCTCCCCCGGACGGGACG ATAGTGTGATTGCTCGCTTGATATGGAGCGTGGCTCTGTCTCTTACAGGA GGCACGATCGCTTTTTTTCCGTTTCGTGTTCGTGTTTCGTGTGGTTGGTG AACCCCTCTCTGGAGACGGTCAGGTGCTGGCAGCCATGAAGCAAGCGATA ACCGCGCCGAACTATGAGCTCAAGGACCGCGCTCCACGGTGTGAGATCGT CCGGTTCGAACCAGACCGGAAAAAGGATATCGTAGGTTTCCAAGGCCAGG TAAAGTTAAAGTTAAAGTGCCGAATGGGGATGGTGCCAAGAGGTTAGACT CGCTCAATGATAATCGGGAAGCTGTAGCAAAGATAGCCCCTTTATAATCC ATAAACGATCGCAGACGTCCTTGAAGAGGAGCTGCTGGCCGGTCGACCAG GAATCTCGAAGGTGCTCCGGAACAAGAAGCAATAATATCTGGTACCCCCC CACACCCCCCCCCTCCCCCTCTTTTTTTTTGTCTGTTTACAAGCGCATGC CATGTACTATTGGGCTCTCGACGATGGCGTTGCCGTCAAGGACGAGCGAG CAAAGCCACGAACTGCGTTCACCAGTTCCTTTGTGACTCTCGTGAGGTCG AAATCCGTCCCACTCTGACGCTCAGCATCCCTATCGCCCGCGACGCGCGA ACAGACGCTCAAAGGCATCGAGGAGAAGTACGGGGTGTCCCTCGACCTCT CCATGGAGGGCAGGGCGGTGGTGTTCGCCGATGACGCCGATAGCGTCAAG AAGGCCGTGAAGCTTGTGCGGGAATTAGTTCACGAGATTGAAGAAGTGAG GCCGCGGCTCGACCAGGGCGGGCGAAAATGAGAAGAAGGGGGAGAAGGGG GGGTGGGGAATGTTTCGGTGAACATTACTCGATTAGTTTTCTTGAAGATC TTCACTCTCTGTGGATGACATTTCACAGACGAAACTGTTCCGTCTTGGTT TAACGATCTAATGGTCTATCCGTGCAATTATCCGCGGGAGTCCAGAGTCC AGAGTGCCAGAGCAGCAAGTATTTCGCGTTGAACTCCGTCCTGATTGACC CCCCCCCCCCCCCCCCCCCCCCCCCAGGGAAAATAATGGGGTTTTGCCAT AGTGGGAGTGGCCCCTTTTTTTTTTTTTCTCGTTTTTTTCTTCCNNNNNN NNNNAAATGATGCGTGTGTCGCAAATGTGACGTGGCCCCTTTTTATTTTC CGTCGCTGTCCTCTTCCCCCTTGGGAGTCCCTCTGGGCCATCTAATAATA ATGTAATGATTTGGCCTACCCCGAAGGCCACCTGAAACTCCTCACAAAGT CCCCCGCGCACACACTACAAAACCCTTTAATGGTAGAAAGGGAAACATTG CTCGAAAAAAACATTTCGACTCGTTCGCAGGGCGACATTTTTAGCGGTAC CGTCAAGACCGTGCACGAGTACGGATGCTTAGTGGAGCTTCTTCGCAACC AGCAGGGCCTGCTGCACGTTTCGAATATGGCCAACACCACGCCCGCTCCG CCGGCGAGAGACTTGGTGAAAGTCGGGGACAGGGTAGATGTTCGGGTGGT TGAGGTGGACAGGTGAGAATAATGACTATGTCCACCGTAGAGGAAGGACA TCCTTCGCCTCTTGGGGCGTTCAGTGGTGTAATATCAAGACCCTCATGCC CCCCCTCCCCCCCCCCCCTCGCCCCCCTCATCACACCCGTGGTTGCTTCA CCCACGGGTTTGGAAGGGTTTTAGTTGTTGAAATTGAGTTTGGGGGCGGG CCCTCTGCGAATGTCTCGTTCCACAGCGCTCGCGGTCTTAGTGTGCGTTT TGGCCGTTCCACCCATGCCGCACGCCGCAGCGGCAACGTATCACTCGTGG CGAGCTGCGCGCTGTTGTGTGAAGGATCCCCCCAACTTCGAACCTATTTT GTCATCATTGTTTTCGACCCCCCCCCCTTCCATCCTTCCAACAGGTTGCG AGGCTTGATCAAGCTCGTTAAGGGAAAATCTTCAGAGCCTGGCGAGAGAC CTTCGCGCCAGAAGCTCGTCGAGGCAGAGAATGAGGAGATGCAGCATGCG GGTCAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig10757:6045..8953-

>mRNA_H-elongata_contig10757.624.1 ID=mRNA_H-elongata_contig10757.624.1|Name=mRNA_H-elongata_contig10757.624.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1332bp|location=Sequence derived from alignment at H-elongata_contig10757:6045..8953- (Himanthalia elongata Himel1 dioecious)
ACCGTGTTGTGCCCTCTTCAGCTGGACGTGAAGCTGCGGGGAGGCGTTCC
TTTGGGCATCCTGGGCGAGGCGCTCAAGACGGCTAAGGCGGGGAGAACAA
GGACCGTGTTGTGCCCTCTTCAGCTGGACGTGAAGCTGCGGGGAGGCGTT
CCTTTGGGCATCCTGGGCGAGGCGCTCAAGACGGCTAAGGCGGGGAGAAC
AAGGGTGCTGGCAGCCATGAAGCAAGCGATAACCGCGCCGAACTATGAGC
TCAAGGACCGCGCTCCACGGTGTGAGATCGTCCGGTTCGAACCAGACCGG
AAAAAGGATATCGTAGGTTTCCAAGGCCAGGTGCTGGCAGCCATGAAGCA
AGCGATAACCGCGCCGAACTATGAGCTCAAGGACCGCGCTCCACGGTGTG
AGATCGTCCGGTTCGAACCAGACCGGAAAAAGGATATCGTAGGTTTCCAA
GGCCAGACGCTCAAAGGCATCGAGGAGAAGTACGGGGTGTCCCTCGACCT
CTCCATGGAGGGCAGGGCGGTGGTGTTCGCCGATGACGCCGATAGCGTCA
AGAAGGCCGTGAAGCTTGTGCGGGAATTAGTTCACGAGATTGAAGAAACG
CTCAAAGGCATCGAGGAGAAGTACGGGGTGTCCCTCGACCTCTCCATGGA
GGGCAGGGCGGTGGTGTTCGCCGATGACGCCGATAGCGTCAAGAAGGCCG
TGAAGCTTGTGCGGGAATTAGTTCACGAGATTGAAGAAGGCGACATTTTT
AGCGGTACCGTCAAGACCGTGCACGAGTACGGATGCTTAGTGGAGCTTCT
TCGCAACCAGCAGGGCCTGCTGCACGTTTCGAATATGGCCAACACCACGC
CCGCTCCGCCGGCGAGAGACTTGGTGAAAGTCGGGGACAGGGTAGATGTT
CGGGTGGTTGAGGTGGACAGGGCGACATTTTTAGCGGTACCGTCAAGACC
GTGCACGAGTACGGATGCTTAGTGGAGCTTCTTCGCAACCAGCAGGGCCT
GCTGCACGTTTCGAATATGGCCAACACCACGCCCGCTCCGCCGGCGAGAG
ACTTGGTGAAAGTCGGGGACAGGGTAGATGTTCGGGTGGTTGAGGTGGAC
AGGTTGCGAGGCTTGATCAAGCTCGTTAAGGGAAAATCTTCAGAGCCTGG
CGAGAGACCTTCGCGCCAGAAGCTCGTCGAGGCAGAGAATGAGGAGATGC
AGCATGCGGGTCAATAGGTTGCGAGGCTTGATCAAGCTCGTTAAGGGAAA
ATCTTCAGAGCCTGGCGAGAGACCTTCGCGCCAGAAGCTCGTCGAGGCAG
AGAATGAGGAGATGCAGCATGCGGGTCAATAG
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