mRNA_H-elongata_contig10757.623.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Match: A0A6H5L4R8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4R8_9PHAE) HSP 1 Score: 364 bits (935), Expect = 8.750e-124 Identity = 175/195 (89.74%), Postives = 188/195 (96.41%), Query Frame = 1
Query: 1 LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNSGRPTCYWLTGFFNPQASNIGMLTAMKQEVTRKHKADKWALDDVIYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSRHEGIMVESEPKKLFVSLPVLYVSANIKSDQVRLR 585
LQ+V++KVR ILTQLQQAIKGEVVMTEELQETLYAVY+AKVPRLW FTITGDEFSWILPTLGLWFSSLITRDEQDRTWLN+GRPTCYWLTGFFNPQA GMLTAMKQEVTRKHKA+KWALDDV+YHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWS+ EG+MVESEPKKLFVSLPVL+VSAN KSDQV+++
Sbjct: 168 LQKVIAKVRSILTQLQQAIKGEVVMTEELQETLYAVYDAKVPRLWAFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNNGRPTCYWLTGFFNPQAKAWGMLTAMKQEVTRKHKAEKWALDDVVYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSKQEGVMVESEPKKLFVSLPVLFVSANTKSDQVKVK 362
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Match: D7FPL8_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPL8_ECTSI) HSP 1 Score: 358 bits (920), Expect = 3.220e-111 Identity = 174/195 (89.23%), Postives = 187/195 (95.90%), Query Frame = 1
Query: 1 LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNSGRPTCYWLTGFFNPQASNIGMLTAMKQEVTRKHKADKWALDDVIYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSRHEGIMVESEPKKLFVSLPVLYVSANIKSDQVRLR 585
LQ+V++KVR ILTQLQQAIKGEVVMTEELQETLYAVY+AKVPRLW FTITGDEFSWILPTLGLWFSSLITRDEQDRTWLN+GRPTCYWLTGFFNPQ GMLTAMKQEVTRKHKA+KWALDDV+YHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWS+ EG+MVESEPKKLFVSLPVL+VSAN KSDQV+++
Sbjct: 4397 LQKVIAKVRSILTQLQQAIKGEVVMTEELQETLYAVYDAKVPRLWAFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNNGRPTCYWLTGFFNPQ----GMLTAMKQEVTRKHKAEKWALDDVVYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSKQEGVMVESEPKKLFVSLPVLFVSANTKSDQVKVK 4587
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Match: W7TAL6_9STRA (Dynein heavy chain n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TAL6_9STRA) HSP 1 Score: 290 bits (743), Expect = 4.400e-97 Identity = 139/195 (71.28%), Postives = 165/195 (84.62%), Query Frame = 1
Query: 1 LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNSGRPTCYWLTGFFNPQASNIGMLTAMKQEVTRKHKADKWALDDVIYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSRHEGIMVESEPKKLFVSLPVLYVSANIKSDQVRLR 585
+QR++SKV+ L QLQ AIKGEVVM+EEL TL AVY+AKVP WVFT+ GDEFSWILPTLGLWFSSL+ RDEQ RTWLN GRP YWL GF NPQ G+LTAMKQEVTR+HKADKWALDDV+YHTEVTSYER EQ+RSPP+EG+Y++GL L+GA W++ EG +VESE KKLFV LPVL+V+AN KS++ ++R
Sbjct: 1 MQRIISKVKITLQQLQLAIKGEVVMSEELASTLLAVYDAKVPHSWVFTVAGDEFSWILPTLGLWFSSLLQRDEQLRTWLNHGRPNSYWLPGFSNPQ----GLLTAMKQEVTRRHKADKWALDDVVYHTEVTSYERPEQIRSPPSEGIYVYGLSLEGAGWNKIEGTLVESEAKKLFVPLPVLHVTANTKSEEFKVR 191
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Match: A0A7S4NI87_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NI87_9STRA) HSP 1 Score: 291 bits (746), Expect = 3.140e-95 Identity = 141/195 (72.31%), Postives = 166/195 (85.13%), Query Frame = 1
Query: 1 LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNSGRPTCYWLTGFFNPQASNIGMLTAMKQEVTRKHKADKWALDDVIYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSRHEGIMVESEPKKLFVSLPVLYVSANIKSDQVRLR 585
LQ V++KVRF LTQLQ AIKGEVVMT ELQETL ++++AKVP LW T+TGDEFSW LPTLGLWFSSL+ RDEQ RTWLN+ RP +WLTGFFNP G LTAMKQEVTR+HKA+KWALDDV+YHTEVT++ER++QV+SPPAEG+YIHGLFLDGAAWSR EG +VES+PK LFV LPVL+V+ N K ++ R R
Sbjct: 167 LQNVITKVRFTLTQLQLAIKGEVVMTSELQETLDSMFDAKVPHLWENTLTGDEFSWRLPTLGLWFSSLLNRDEQYRTWLNNARPNSFWLTGFFNPN----GCLTAMKQEVTRQHKANKWALDDVVYHTEVTNFERVDQVKSPPAEGIYIHGLFLDGAAWSRQEGHLVESQPKVLFVPLPVLFVTGNAKKEEDRSR 357
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Match: A0A7S4T437_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T437_9STRA) HSP 1 Score: 287 bits (734), Expect = 1.510e-93 Identity = 137/191 (71.73%), Postives = 162/191 (84.82%), Query Frame = 1
Query: 1 LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNSGRPTCYWLTGFFNPQASNIGMLTAMKQEVTRKHKADKWALDDVIYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSRHEGIMVESEPKKLFVSLPVLYVSANIKSDQ 573
LQ V+SKVRFILTQLQ AIKGEVVMT ELQETL ++++AKVP W T+TGDEFSW LPTLGLWFSSL+ RD+Q RTWLN+GRP +WLTGFFNP G LTAMKQEVTRKHKA+KWALDDV+YHTEV +ER EQV++PP EG+YIHGLFLDGAA+SR EG ++ES+PK LFVSLP+L+V+ N + D+
Sbjct: 157 LQNVISKVRFILTQLQLAIKGEVVMTAELQETLDSMFDAKVPHFWENTLTGDEFSWRLPTLGLWFSSLLNRDDQYRTWLNNGRPNSFWLTGFFNPN----GCLTAMKQEVTRKHKAEKWALDDVVYHTEVMPFERAEQVKNPPTEGIYIHGLFLDGAAFSRQEGHLIESQPKTLFVSLPILFVTGNARKDE 343
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Match: A0A835YLK0_9STRA (Dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK0_9STRA) HSP 1 Score: 302 bits (774), Expect = 1.380e-91 Identity = 146/191 (76.44%), Postives = 162/191 (84.82%), Query Frame = 1
Query: 1 LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNSGRPTCYWLTGFFNPQASNIGMLTAMKQEVTRKHKADKWALDDVIYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSRHEGIMVESEPKKLFVSLPVLYVSANIKSDQ 573
LQRV+ KVRF L QLQ AIKGEVVM+EELQ+ L A+Y+A+V RLW +TI GDEFSW+LPTLGLWFSSLI RDEQ RTWLN GRP YWLTGFFNPQ GMLTAMKQEVTRKHK DKWALDDV+YHTEVT++ER+EQVRS P EGVYIHGLF+DGAAWS+ EG +VES PK LF SLPV+ VSAN K DQ
Sbjct: 4397 LQRVIGKVRFTLAQLQLAIKGEVVMSEELQDALNAIYDARVARLWTYTIAGDEFSWVLPTLGLWFSSLIMRDEQSRTWLNGGRPNVYWLTGFFNPQ----GMLTAMKQEVTRKHKGDKWALDDVVYHTEVTTHERVEQVRSSPQEGVYIHGLFIDGAAWSKQEGCLVESAPKVLFTSLPVMLVSANTKKDQ 4583
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Match: A0A7S0CDH8_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDH8_9STRA) HSP 1 Score: 280 bits (716), Expect = 1.720e-90 Identity = 131/191 (68.59%), Postives = 162/191 (84.82%), Query Frame = 1
Query: 1 LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNSGRPTCYWLTGFFNPQASNIGMLTAMKQEVTRKHKADKWALDDVIYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSRHEGIMVESEPKKLFVSLPVLYVSANIKSDQ 573
LQ V+ KVRF L QLQ AIKGEVVMT ELQETL ++++A+VP W T+TGDEFSW LPTLGLWFSSL+ RDEQDR+WL++GRP +WLTGFFNP G+LTAMKQEVTRKHKA KWALDDV+YHTEV+++ER +QV+S PAEG+Y+HGLFLDG+AWS+ +G +VES+PK LFV LP+L+V+ N+K D+
Sbjct: 183 LQNVIFKVRFTLGQLQLAIKGEVVMTAELQETLDSMFDARVPHYWENTLTGDEFSWRLPTLGLWFSSLLNRDEQDRSWLDNGRPLSFWLTGFFNPN----GLLTAMKQEVTRKHKAQKWALDDVVYHTEVSNFERADQVKSAPAEGIYVHGLFLDGSAWSKSDGHLVESQPKVLFVPLPILFVTGNVKKDE 369
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Match: A0A4D9CRU4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRU4_9STRA) HSP 1 Score: 292 bits (747), Expect = 5.920e-88 Identity = 140/195 (71.79%), Postives = 165/195 (84.62%), Query Frame = 1
Query: 1 LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNSGRPTCYWLTGFFNPQASNIGMLTAMKQEVTRKHKADKWALDDVIYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSRHEGIMVESEPKKLFVSLPVLYVSANIKSDQVRLR 585
+QR++SKV+ L QLQ AIKGEVVM+EEL TL AVY+AKVP WVFT+ GDEFSWILPTLGLWFSSL+ RDEQ RTWLN GRP YWL GF NPQ G+LTAMKQEVTR+HKADKWALDDV+YHTEVTSYER EQ+RSPP+EG+Y+HGL L+GA W++ EG +VESE KKLFV LPVL+V+AN KS++ ++R
Sbjct: 4434 IQRIISKVKITLQQLQLAIKGEVVMSEELVATLVAVYDAKVPHSWVFTVAGDEFSWILPTLGLWFSSLLQRDEQLRTWLNHGRPNSYWLPGFSNPQ----GLLTAMKQEVTRRHKADKWALDDVVYHTEVTSYERPEQIRSPPSEGIYVHGLSLEGAGWNKIEGTLVESEAKKLFVPLPVLHVTANTKSEEFKVR 4624
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Match: A0A2D5NKH1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5NKH1_9BACT) HSP 1 Score: 285 bits (729), Expect = 1.100e-87 Identity = 135/195 (69.23%), Postives = 167/195 (85.64%), Query Frame = 1
Query: 1 LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNSGRPTCYWLTGFFNPQASNIGMLTAMKQEVTRKHKADKWALDDVIYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSRHEGIMVESEPKKLFVSLPVLYVSANIKSDQVRLR 585
LQ+V++K+RF++ QLQ AIKGEVVM+EEL +TL A+Y+AKVP++WV T+ GDEFSWILPTLGLWFSSL+ RDEQ+RTWLNSGRP YWLTGFFNPQ GMLTAMKQEVTR H+ + WALD+VIYHTEVTS+ER+EQVRS P EG YIHGLFL+G A+ +++G + ESEPKKLFV LPVL+V+AN + +++ R
Sbjct: 665 LQKVIAKIRFVMQQLQLAIKGEVVMSEELADTLGAMYDAKVPQMWVLTVAGDEFSWILPTLGLWFSSLLLRDEQNRTWLNSGRPNSYWLTGFFNPQ----GMLTAMKQEVTRNHRKENWALDNVIYHTEVTSFERVEQVRSKPDEGAYIHGLFLEGGAFDKNQGQLCESEPKKLFVPLPVLFVTANQEEPELKKR 855
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Match: A0A482S2S2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2S2_9ARCH) HSP 1 Score: 287 bits (735), Expect = 1.290e-87 Identity = 138/197 (70.05%), Postives = 167/197 (84.77%), Query Frame = 1
Query: 1 LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNSGRPTCYWLTGFFNPQASNIGMLTAMKQEVTRKHKAD--KWALDDVIYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSRHEGIMVESEPKKLFVSLPVLYVSANIKSDQVRLR 585
LQ V+SKV F+L QL+ AI GEVVMT++LQ+ L A+YEAKVPR+W+FT+ GDEFSWILPTLGLWFSSL+ RDEQDRTWL +GRP YWLTGFFNPQ GMLTAMKQEV RKH+ D KWALDD+IYHTEVT+Y+R+E V+SPP+EG YIHGLF++G AWS+ ++VESEPK LFV LPVL VSAN+KS++++ R
Sbjct: 822 LQNVISKVEFMLKQLRLAINGEVVMTDQLQQCLDAIYEAKVPRMWLFTVAGDEFSWILPTLGLWFSSLLQRDEQDRTWLLTGRPNTYWLTGFFNPQ----GMLTAMKQEVCRKHQKDANKWALDDIIYHTEVTNYDRIESVKSPPSEGCYIHGLFIEGCAWSKEHQMLVESEPKVLFVPLPVLMVSANLKSEEMKNR 1014 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10757.623.1 >prot_H-elongata_contig10757.623.1 ID=prot_H-elongata_contig10757.623.1|Name=mRNA_H-elongata_contig10757.623.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTITback to top mRNA from alignment at H-elongata_contig10757:1202..2984+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10757.623.1 ID=mRNA_H-elongata_contig10757.623.1|Name=mRNA_H-elongata_contig10757.623.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1783bp|location=Sequence derived from alignment at H-elongata_contig10757:1202..2984+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10757:1202..2984+ >mRNA_H-elongata_contig10757.623.1 ID=mRNA_H-elongata_contig10757.623.1|Name=mRNA_H-elongata_contig10757.623.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1170bp|location=Sequence derived from alignment at H-elongata_contig10757:1202..2984+ (Himanthalia elongata Himel1 dioecious)back to top |