mRNA_H-elongata_contig107469.616.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107469.616.1
Unique NamemRNA_H-elongata_contig107469.616.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig107469.616.1 vs. uniprot
Match: D7FVI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI3_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 3.740e-93
Identity = 145/189 (76.72%), Postives = 168/189 (88.89%), Query Frame = 1
Query:    1 ERQVEATNARMGKLPAMSGMQLSFRRRGSTAEETTQDEALNQKRQLQTLFAMDTADAYRVFDSMEHFLCHPEYLRGQLQVQIDETTQSWMVARYHELDDAVLREILGKKMTAKTRKDLDDVSELTRVPLRSCHRHYDTIRRLLSNLEDSSALPHISVAKEVGEKIGLPLWLAAKYTAIVFLLHLRFQAR 567
            E++V A+NAR+G LPAMS +QLSFRRRGSTAEETTQDEAL+Q+RQL+TLF  DTADAYRVFD+MEHFL  PE+LRGQLQVQ+ ETTQ+WMV RYHELDD+VLREILGKK+T+KTRKDLDDVSELT VPLRSCHR YD I+RLL NLEDS  L H+SVAKEV +K+GLPL L+AKYTA+ FLLH+RF  +
Sbjct:   45 EKEVSASNARIGNLPAMSRVQLSFRRRGSTAEETTQDEALSQRRQLETLFGKDTADAYRVFDTMEHFLRQPEHLRGQLQVQLGETTQAWMVERYHELDDSVLREILGKKVTSKTRKDLDDVSELTHVPLRSCHRQYDNIQRLLGNLEDSVILQHLSVAKEVQDKLGLPLRLSAKYTAVAFLLHVRFHVQ 233          
BLAST of mRNA_H-elongata_contig107469.616.1 vs. uniprot
Match: A0A835YW80_9STRA (Acidic fibroblast growth factor binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW80_9STRA)

HSP 1 Score: 129 bits (325), Expect = 5.890e-32
Identity = 76/178 (42.70%), Postives = 108/178 (60.67%), Query Frame = 1
Query:   28 RMGKLPAMSGMQLSFRRRGSTAEETTQDEALNQKRQLQTLFAMDTADAYRVFDSMEHFLCHPEYLRGQLQVQIDETTQSWMVARYHELDDAVLREILGKKMTAKTRKDLDDVSELTRVPLRSCHRHYDTIRRLLSNLEDSSALPHISVAKEVGEKIGLPLWLAAKYTAIVFLLHLRFQ 561
            +MGK+P   GM+ SFRRRGS+ EE + + AL++K+QL+ LF  DT D           LC P     Q+ +Q+      WM+  Y+ LD+ VLRE LG+++  K RKDL DVSE T+ P++SC R +D +RR+++ LE+S    H  V  E+ EK  L   LAA+Y  + FLLH +F 
Sbjct:   65 KMGKIP---GMEFSFRRRGSSVEEMSAEAALSEKQQLERLFLRDTKD-----------LC-PGTRLTQVTLQLSPAAAQWMIRCYYALDENVLREFLGRRLAGKVRKDLGDVSEATKTPVKSCRRQFDNLRRVMTMLEESHQY-HCYVMLELQEKFELGPSLAAQYMCVTFLLHHKFN 226          
BLAST of mRNA_H-elongata_contig107469.616.1 vs. uniprot
Match: UPI000C206223 (acidic fibroblast growth factor intracellular-binding protein n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C206223)

HSP 1 Score: 116 bits (291), Expect = 6.280e-28
Identity = 58/139 (41.73%), Postives = 89/139 (64.03%), Query Frame = 1
Query:  145 LFAMDTADAYRVFDSMEHFLCHPEYLRGQLQVQIDETTQSWMVARYHELDDAVLREILGKKMTAKTRKDLDDVSELTRVPLRSCHRHYDTIRRLLSNLEDSSALPHISVAKEVGEKIGLPLWLAAKYTAIVFLLHLRFQ 561
            L A D  D YR +  +E  L +P  L+ QL+ QI+  T+  ++ +Y+E DD+V+RE+LGKK+++K RKDLD+VSE T+V L+SC R +D ++R+   +E+ S     S+ + +     LP  LA KY  +VFL  LRF+
Sbjct:   50 LIASDVLDHYRTYSLLEKLLSNPNKLQEQLEFQIEPQTRKLLIEKYYEFDDSVVRELLGKKLSSKHRKDLDEVSEKTKVALKSCRRQFDNVKRVFKEVEEKSG----SIVQNITTTFFLPEELAKKYACVVFLACLRFE 184          
BLAST of mRNA_H-elongata_contig107469.616.1 vs. uniprot
Match: A0A6J1SQZ8_FRAOC (acidic fibroblast growth factor intracellular-binding protein n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1SQZ8_FRAOC)

HSP 1 Score: 115 bits (289), Expect = 1.290e-27
Identity = 60/140 (42.86%), Postives = 90/140 (64.29%), Query Frame = 1
Query:  145 LFAMDTADAYRVFDSMEHFLCHPEYLRGQLQVQIDETTQSWMVARYHELDDAVLREILGKKMTAKTRKDLDDVSELTRVPLRSCHRHYDTIRRLLSNLEDSSALPHISVAKEVGEKIGLPLWLAAKYTAIVFLLHLRFQA 564
            L A D  D YR +  +E  L +P  L  QL  QI+  T+ +++ +Y++ DDAV+RE+LGKK++++ RKDLD+VSE TRV L+SC R +D ++R+   +E+       SV K V +   LP  LA +Y A+VFL  +RF+A
Sbjct:   51 LVASDVLDHYRTYSLLEKLLHNPPKLAEQLAFQIEPQTRGFLIEKYYDFDDAVIRELLGKKLSSRHRKDLDEVSEKTRVQLKSCRRQFDNVKRVFKTVEEMQG----SVVKNVAKLFLLPEPLARRYGAVVFLACMRFEA 186          
BLAST of mRNA_H-elongata_contig107469.616.1 vs. uniprot
Match: A0A8J5MWV7_HOMAM (Acidic fibroblast growth factor intracellular-binding protein-like n=3 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5MWV7_HOMAM)

HSP 1 Score: 114 bits (284), Expect = 4.930e-27
Identity = 64/154 (41.56%), Postives = 92/154 (59.74%), Query Frame = 1
Query:  118 LNQKRQLQT------LFAMDTADAYRVFDSMEHFLCHPEYLRGQLQVQIDETTQSWMVARYHELDDAVLREILGKKMTAKTRKDLDDVSELTRVPLRSCHRHYDTIRRLLSNLEDSSALPHISVAKEVGEKIGLPLWLAAKYTAIVFLLHLRFQ 561
            L Q+ +L+T      L A DTAD YR F  +E  L  P  L  +   Q++   Q  ++ +Y+E DD V+REI+GKK++ +TRKDLDDVSE T V LRSC R +D ++R+   L++ + L    V   +     LP  LA KY AIVF+++ RF+
Sbjct:   36 LQQRGELETWGATLELLASDTADHYRTFGMLEKLLLTPTKLAEEWTFQLEPAIQKMVIEKYYEFDDIVIREIIGKKLSGRTRKDLDDVSEKTGVLLRSCRRQFDNVKRIYKQLDEMNGL----VVANIQSIFLLPTVLAKKYAAIVFIVNNRFE 185          
BLAST of mRNA_H-elongata_contig107469.616.1 vs. uniprot
Match: UPI00083BE878 (acidic fibroblast growth factor intracellular-binding protein n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083BE878)

HSP 1 Score: 113 bits (283), Expect = 9.250e-27
Identity = 57/139 (41.01%), Postives = 91/139 (65.47%), Query Frame = 1
Query:  145 LFAMDTADAYRVFDSMEHFLCHPEYLRGQLQVQIDETTQSWMVARYHELDDAVLREILGKKMTAKTRKDLDDVSELTRVPLRSCHRHYDTIRRLLSNLEDSSALPHISVAKEVGEKIGLPLWLAAKYTAIVFLLHLRFQ 561
            L A D  D YR +  +E  L +P  L+ QL+ QI+  T+  ++ +Y++ DD+V+RE+LGKK++++ RKDLD+V+E T VPL+SC R +D ++R+   +E+   LP  S+ + + +   LP  LA KY  IVFL  +RF+
Sbjct:   51 LIASDVLDHYRTYSLIEKLLSNPNKLQEQLEFQIEPQTKQLLIEKYYDFDDSVIRELLGKKLSSRNRKDLDEVAEKTGVPLKSCRRQFDNVKRIYKTVEE---LPG-SITQNIQKLFYLPEELAGKYACIVFLACIRFE 185          
BLAST of mRNA_H-elongata_contig107469.616.1 vs. uniprot
Match: UPI001E673BD4 (acidic fibroblast growth factor intracellular-binding protein-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E673BD4)

HSP 1 Score: 112 bits (280), Expect = 2.970e-26
Identity = 62/154 (40.26%), Postives = 91/154 (59.09%), Query Frame = 1
Query:  118 LNQKRQLQT------LFAMDTADAYRVFDSMEHFLCHPEYLRGQLQVQIDETTQSWMVARYHELDDAVLREILGKKMTAKTRKDLDDVSELTRVPLRSCHRHYDTIRRLLSNLEDSSALPHISVAKEVGEKIGLPLWLAAKYTAIVFLLHLRFQ 561
            L Q+ +L+T      L   DTAD YR F  +E  L  P  L  +   Q++   Q  ++ +Y+E DD V+REILGKK++ +TRKDLDDV+E T V LRSC R +D ++R+   +++ +     SV   +     LP  LA KY AIVF+++ RF+
Sbjct:   36 LQQRGELETWGATLELLTSDTADHYRTFGMLEKLLLTPTKLAEEWTFQLEPAVQKMVIQKYYEFDDIVIREILGKKLSGRTRKDLDDVAEKTGVLLRSCRRQFDNVKRIFKQVDEMTG----SVVTNIQSVFLLPTRLAKKYAAIVFIINNRFE 185          
BLAST of mRNA_H-elongata_contig107469.616.1 vs. uniprot
Match: A0A1Y1MMW7_PHOPY (Uncharacterized protein n=3 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1MMW7_PHOPY)

HSP 1 Score: 111 bits (278), Expect = 4.970e-26
Identity = 59/139 (42.45%), Postives = 85/139 (61.15%), Query Frame = 1
Query:  145 LFAMDTADAYRVFDSMEHFLCHPEYLRGQLQVQIDETTQSWMVARYHELDDAVLREILGKKMTAKTRKDLDDVSELTRVPLRSCHRHYDTIRRLLSNLEDSSALPHISVAKEVGEKIGLPLWLAAKYTAIVFLLHLRFQ 561
            L A D  D YR +  +E  L HP  L+ QL  QI+  TQ  ++ +Y+E DD V RE+LGKK+++K RKDLD++ E T VPL+SC R +D ++R+   +E+       S+ + V +   L   LA+KY  IVFL  LRF+
Sbjct:   51 LIASDVLDHYRTYSLLEKLLTHPSKLQEQLAFQIEPKTQQLLIEKYYEFDDNVARELLGKKLSSKHRKDLDEICEKTSVPLKSCRRQFDNLKRVFKMVEEMPG----SLVQNVQKYFMLSPDLASKYACIVFLACLRFE 185          
BLAST of mRNA_H-elongata_contig107469.616.1 vs. uniprot
Match: A0A7D9L1F0_PARCT (Acidic fibroblast growth factor intracellular-binding (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9L1F0_PARCT)

HSP 1 Score: 107 bits (266), Expect = 5.640e-26
Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  145 LFAMDTADAYRVFDSMEHFLCHPEYLRGQLQVQIDETTQSWMVARYHELDDAVLREILGKKMTAKTRKDLDDVSELTRVPLRSCHRHYDTIRRLLSNLEDSS 450
            +   D AD YRVF  +EHFL  P  L  QL +QI    Q  ++ RY+E D+ V+REILGKK+T + RKDLDD+SE T VPL+SC R YD I+ +   +EDS+
Sbjct:   50 IITSDIADQYRVFLVLEHFLQTPPLLATQLMLQIPSGVQDRLIERYYEFDNTVVREILGKKLTTRLRKDLDDISERTSVPLKSCKRQYDNIKNIFKAVEDST 151          
BLAST of mRNA_H-elongata_contig107469.616.1 vs. uniprot
Match: A0A8K0GGT5_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0GGT5_9COLE)

HSP 1 Score: 111 bits (277), Expect = 7.150e-26
Identity = 58/139 (41.73%), Postives = 88/139 (63.31%), Query Frame = 1
Query:  145 LFAMDTADAYRVFDSMEHFLCHPEYLRGQLQVQIDETTQSWMVARYHELDDAVLREILGKKMTAKTRKDLDDVSELTRVPLRSCHRHYDTIRRLLSNLEDSSALPHISVAKEVGEKIGLPLWLAAKYTAIVFLLHLRFQ 561
            L A D  D YR +  +E  L +P  L+ QL  QI+  T+  ++ +Y+E DD+V+RE+LGKK+++K RKDLD+VSE T VPL+SC R +D I+R+   +E+       S+ + + +   L   LA KY +IVFL  +RF+
Sbjct:   51 LIASDVLDHYRTYSLLEKLLNNPSKLQEQLAFQIEPQTRQLLIEKYYEFDDSVIRELLGKKLSSKHRKDLDEVSEKTLVPLKSCRRQFDNIKRIFKIVEEMPG----SLVQNIQKSFHLSEDLAKKYASIVFLACIRFE 185          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107469.616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVI3_ECTSI3.740e-9376.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YW80_9STRA5.890e-3242.70Acidic fibroblast growth factor binding-domain-con... [more]
UPI000C2062236.280e-2841.73acidic fibroblast growth factor intracellular-bind... [more]
A0A6J1SQZ8_FRAOC1.290e-2742.86acidic fibroblast growth factor intracellular-bind... [more]
A0A8J5MWV7_HOMAM4.930e-2741.56Acidic fibroblast growth factor intracellular-bind... [more]
UPI00083BE8789.250e-2741.01acidic fibroblast growth factor intracellular-bind... [more]
UPI001E673BD42.970e-2640.26acidic fibroblast growth factor intracellular-bind... [more]
A0A1Y1MMW7_PHOPY4.970e-2642.45Uncharacterized protein n=3 Tax=Photinus pyralis T... [more]
A0A7D9L1F0_PARCT5.640e-2650.98Acidic fibroblast growth factor intracellular-bind... [more]
A0A8K0GGT5_9COLE7.150e-2641.73Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107469contigH-elongata_contig107469:55..1910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score280.8
Seed ortholog evalue4.5e-73
Seed eggNOG ortholog2880.D7FVI3
Preferred nameFIBP
GOsGO:0002009,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007368,GO:0007389,GO:0008150,GO:0008543,GO:0009653,GO:0009719,GO:0009799,GO:0009855,GO:0009888,GO:0009987,GO:0010033,GO:0012505,GO:0016020,GO:0016043,GO:0016604,GO:0016607,GO:0017134,GO:0019838,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044782,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060026,GO:0060271,GO:0060429,GO:0065007,GO:0070013,GO:0070121,GO:0070848,GO:0070887,GO:0070925,GO:0071310,GO:0071363,GO:0071495,GO:0071774,GO:0071840,GO:0120031,GO:0120036
EggNOG free text desc.fibroblast growth factor binding
EggNOG OGs2CBWY@1,2QPQ2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size567
Cds size537
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107469.616.1prot_H-elongata_contig107469.616.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107469 55..1880 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929604.6426332-CDS-H-elongata_contig107469:54..1991622929604.6426332-CDS-H-elongata_contig107469:54..199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107469 55..199 -
1691679088.2655857-CDS-H-elongata_contig107469:54..1991691679088.2655857-CDS-H-elongata_contig107469:54..199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107469 55..199 -
1622929604.6623316-CDS-H-elongata_contig107469:714..8751622929604.6623316-CDS-H-elongata_contig107469:714..875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107469 715..875 -
1691679088.275969-CDS-H-elongata_contig107469:714..8751691679088.275969-CDS-H-elongata_contig107469:714..875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107469 715..875 -
1622929604.6809325-CDS-H-elongata_contig107469:1320..14731622929604.6809325-CDS-H-elongata_contig107469:1320..1473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107469 1321..1473 -
1691679088.28363-CDS-H-elongata_contig107469:1320..14731691679088.28363-CDS-H-elongata_contig107469:1320..1473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107469 1321..1473 -
1622929604.7017152-CDS-H-elongata_contig107469:1802..18801622929604.7017152-CDS-H-elongata_contig107469:1802..1880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107469 1803..1880 -
1691679088.291673-CDS-H-elongata_contig107469:1802..18801691679088.291673-CDS-H-elongata_contig107469:1802..1880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107469 1803..1880 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929604.7159278-UTR-H-elongata_contig107469:1880..19101622929604.7159278-UTR-H-elongata_contig107469:1880..1910Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107469 1881..1910 -
1691679088.2989597-UTR-H-elongata_contig107469:1880..19101691679088.2989597-UTR-H-elongata_contig107469:1880..1910Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107469 1881..1910 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107469.616.1

>prot_H-elongata_contig107469.616.1 ID=prot_H-elongata_contig107469.616.1|Name=mRNA_H-elongata_contig107469.616.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
MGKLPAMSGMQLSFRRRGSTAEETTQDEALNQKRQLQTLFAMDTADAYRV
FDSMEHFLCHPEYLRGQLQVQIDETTQSWMVARYHELDDAVLREILGKKM
TAKTRKDLDDVSELTRVPLRSCHRHYDTIRRLLSNLEDSSALPHISVAKE
VGEKIGLPLWLAAKYTAIVFLLHLRFQAR
back to top

mRNA from alignment at H-elongata_contig107469:55..1910-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107469.616.1 ID=mRNA_H-elongata_contig107469.616.1|Name=mRNA_H-elongata_contig107469.616.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1856bp|location=Sequence derived from alignment at H-elongata_contig107469:55..1910- (Himanthalia elongata Himel1 dioecious)
GAACGGCAGGTGGAGGCGACCAACGCCCGCATGGGGAAGCTCCCAGCGAT GTCCGGCATGCAGCTATCATTTAGGAGAAGAGGCTCCACGGCCGAAGAGA CTACGCAGGTACCCAGCTTCGAACTCAATCAAGTATAAAATATACTTGAA GCCCTGGTCGCGTATTGTCTAAATTCTGCGCGCATCTCATGCCTCGCCTC ACCTTGTACGTGTTGTGTTATGTGTGCGGAAAATGTTTGGTGATGGAGGT ATGCGGCTGTCAGCCGTGCTCCCACAGCAGCCGTGCAGATACGGATGGCT CTCCAGCTGCACCGAAGCTTTTTATGTGGCAACGTTATTTTTCATCGCGT GGAGAAGTCTCCCTGTGGTTCAAAACGTACTGCGCTGTACTTATGATCTA GATTCATTTCTCGACGCGCGTTCGCTTGCTCTTTCAGGATGAGGCGCTGA ACCAAAAGCGTCAGCTCCAGACCCTCTTCGCCATGGATACCGCGGACGCG TACCGAGTCTTTGACAGCATGGAGCATTTTCTGTGCCATCCGGAGTACCT CAGGGGGCAGCTGCAGGTCCAGATAGACGAAACCACCCAGGTAAAACACC CCCACGTTTTGAAGGCGATCCATACGTGTACTTCAAACAGAGTAACTATA TAATTACTTACAGCAACCGATTCAAGCTAGACCTCCTCTCAAACCCCACG GCAACGTACCTATGGGCAACGATCGCCCGAGGCCATTGATAGCAGATCGG TGCAACCTGGTCCGCTCGGCAACATCATGTATTTTCATGGTCACTTTGTA TTTCGCGCAAATCTCAAACTCCTACGAATTATGTTCAGGAACAAGGCACT CCTAACCCTTGCAATTTACCCTACTGGCCCTAACCCGACGATGACATGTT CACGCTGCAAGATACGTCTTCATCACTGGGACCAGCTTTGTGCGGGTGAT AATCTTATAAAAAGCGTATTCCTCTCAACTCCTGCGCTTGCGACACGTCG TTCTCCTGCCACAACCTCGCCTCGCTCCCAAATAGTCCTGGATGGTGGCA CGATACCACGAGCTGGACGATGCGGTGCTCCGAGAAATCTTGGGCAAGAA GATGACGGCAAAAACGAGAAAGGACCTTGATGACGTCAGCGAGCTCACGC GCGTCCCGCTCCGCAGCTGCCACCGACATTATGATACCATTCGCAGGTGA GAGACAAACGAGTGTCGTCTTTTCGTAGATTCGCCGATGATCGGCCGAAA AGGTCTTCGTCGTTCGGTTGGCTTTCGCTCTGCGCTCGAATAGCATTATG TCGGCGTCCTGTTGGAAACACGCTCGGGCCTTCGACTGGCACAATCTTGG TGTCTAACGGTGCAAGATAGCAGTTGCATGCTTGAGTTGGTGATCTGTGT GGAAGGTACTCTGCCTAGGGAAGGCACTGGGGAGATTGGACGGAACAACT CTTGTGTCGAACGGTGTGCAAAAATATTGCTTGCTTTGCGCAAGAAGAGG GTTGCGTCCTCGCCCCCGCGTGTGCAAAAGCTGCGGGGCGTTCGATAAAT CTGGATTCGGATGTGAACCAGCGCGGGTCAGTCGTGTATATATTCCTACG CCAAAACCGTGCAGGCAGCCATCAACGCTCGCTGCGTATTATTTTTATCC ATATCGCTTTCAAGGGAGCCGTTTACGCCTCCCGTGCACCTCTTCAATCC TCGTGTCTCAGGCTTCTCTCGAACTTAGAAGACAGCAGCGCCTTGCCGCA CATTTCCGTGGCGAAAGAGGTTGGAGAAAAAATAGGTCTCCCGCTATGGC TGGCCGCAAAATACACGGCCATCGTGTTTCTTCTGCACCTCAGATTTCAG GCGAGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig107469:55..1910-

>mRNA_H-elongata_contig107469.616.1 ID=mRNA_H-elongata_contig107469.616.1|Name=mRNA_H-elongata_contig107469.616.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig107469:55..1910- (Himanthalia elongata Himel1 dioecious)
ATGGGGAAGCTCCCAGCGATGTCCGGCATGCAGCTATCATTTAGGAGAAG
AGGCTCCACGGCCGAAGAGACTACGCAGATGGGGAAGCTCCCAGCGATGT
CCGGCATGCAGCTATCATTTAGGAGAAGAGGCTCCACGGCCGAAGAGACT
ACGCAGGATGAGGCGCTGAACCAAAAGCGTCAGCTCCAGACCCTCTTCGC
CATGGATACCGCGGACGCGTACCGAGTCTTTGACAGCATGGAGCATTTTC
TGTGCCATCCGGAGTACCTCAGGGGGCAGCTGCAGGTCCAGATAGACGAA
ACCACCCAGGATGAGGCGCTGAACCAAAAGCGTCAGCTCCAGACCCTCTT
CGCCATGGATACCGCGGACGCGTACCGAGTCTTTGACAGCATGGAGCATT
TTCTGTGCCATCCGGAGTACCTCAGGGGGCAGCTGCAGGTCCAGATAGAC
GAAACCACCCAGTCCTGGATGGTGGCACGATACCACGAGCTGGACGATGC
GGTGCTCCGAGAAATCTTGGGCAAGAAGATGACGGCAAAAACGAGAAAGG
ACCTTGATGACGTCAGCGAGCTCACGCGCGTCCCGCTCCGCAGCTGCCAC
CGACATTATGATACCATTCGCAGTCCTGGATGGTGGCACGATACCACGAG
CTGGACGATGCGGTGCTCCGAGAAATCTTGGGCAAGAAGATGACGGCAAA
AACGAGAAAGGACCTTGATGACGTCAGCGAGCTCACGCGCGTCCCGCTCC
GCAGCTGCCACCGACATTATGATACCATTCGCAGGCTTCTCTCGAACTTA
GAAGACAGCAGCGCCTTGCCGCACATTTCCGTGGCGAAAGAGGTTGGAGA
AAAAATAGGTCTCCCGCTATGGCTGGCCGCAAAATACACGGCCATCGTGT
TTCTTCTGCACCTCAGATTTCAGGCGAGAGCTTCTCTCGAACTTAGAAGA
CAGCAGCGCCTTGCCGCACATTTCCGTGGCGAAAGAGGTTGGAGAAAAAA
TAGGTCTCCCGCTATGGCTGGCCGCAAAATACACGGCCATCGTGTTTCTT
CTGCACCTCAGATTTCAGGCGAGA
back to top