mRNA_H-elongata_contig107426.613.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107426.613.1
Unique NamemRNA_H-elongata_contig107426.613.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig107426.613.1 vs. uniprot
Match: D8LGY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY7_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 5.300e-48
Identity = 85/127 (66.93%), Postives = 104/127 (81.89%), Query Frame = 1 
Query:    1 LVEDVLEEELPHMAAALRGSGWAAGSLAARWMWQCLLGVIDWPDVVAYMVLALLRGYDYQVYFVVALLRAAQPRVVHAASAGIDLSPLLLEGEALLDFHAETSLAFMDDLEHRHRPRCLEATRAFLA 381
            LVE++LEEELP M+ ALRGSGWAA  LAARW+ QC+L V+DWP VVA++ L+LLRG+DYQVYFVVAL RAAQP V+ AAS G+DL+ LL  GEAL  F+ E SL+FM+ LE RHR RC+ AT+A+LA
Sbjct:  400 LVEELLEEELPLMSVALRGSGWAAAPLAARWVRQCMLSVVDWPGVVAFLALSLLRGHDYQVYFVVALFRAAQPSVMEAASKGLDLTGLLGRGEALEAFNLEESLSFMEALERRHRGRCIAATKAYLA 526
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BLAST of mRNA_H-elongata_contig107426.613.1 vs. uniprot
Match: A0A6H5KJF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJF3_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 1.120e-46
Identity = 85/127 (66.93%), Postives = 105/127 (82.68%), Query Frame = 1 
Query:    1 LVEDVLEEELPHMAAALRGSGWAAGSLAARWMWQCLLGVIDWPDVVAYMVLALLRGYDYQVYFVVALLRAAQPRVVHAASAGIDLSPLLLEGEALLDFHAETSLAFMDDLEHRHRPRCLEATRAFLA 381
            LVE++LEEELP M+AALRGSGWAA  LAARW+ QC+L ++DWP VVA++ L+LLRG+DYQVYFVVAL RAAQP V+ AAS G+DL+ LL  GEAL  F+ E SL+FM+ LE RHR RC+ AT+A+LA
Sbjct: 1520 LVEELLEEELPLMSAALRGSGWAAAPLAARWVRQCMLSIVDWPGVVAFLALSLLRGHDYQVYFVVALFRAAQPCVMEAASKGLDLTGLLGRGEALEAFNLEESLSFMEALERRHRGRCIAATKAYLA 1646
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BLAST of mRNA_H-elongata_contig107426.613.1 vs. uniprot
Match: A0A5B7GTH1_PORTR (Protein broad-minded n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7GTH1_PORTR)

HSP 1 Score: 67.0 bits (162), Expect = 3.200e-11
Identity = 41/120 (34.17%), Postives = 64/120 (53.33%), Query Frame = 1 
Query:    4 VEDVLEEELPHMAAALRGSGWAAGSLAARWMWQCLLGVIDWPDVVAYMVLALLRGYDYQVYFVVALLRAAQPRVVHAASAGIDLSPLLLEGEALLDFHAETSLAFMDDLEHRHRPRCLEA 363
            V+ ++  E+P +  AL  +     S+   W+    LGV+ W +V  Y+VL LL G DY +YF+VAL++  Q  ++  AS+   L  +LL+   +  + A   L FM+ L  RHR   L A
Sbjct:   50 VQLIVSIEIPTLYMALEANDMCLWSVLGEWVRCVFLGVLPWSEVCHYLVLVLLLGPDYTIYFLVALVKHLQDTIIKQASSNKAL--VLLQTSVINGWRAGEQLGFMEALCRRHRRTVLPA 167
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BLAST of mRNA_H-elongata_contig107426.613.1 vs. uniprot
Match: A0A423U4N1_PENVA (Uncharacterized protein (Fragment) n=5 Tax=Penaeus TaxID=133894 RepID=A0A423U4N1_PENVA)

HSP 1 Score: 65.1 bits (157), Expect = 1.130e-9
Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 1 
Query:    4 VEDVLEEELPHMAAALRGSGWAAGSLAARWMWQCLLGVIDWPDVVAYMVLALLRGYDYQVYFVVALLRAAQPRVVHAASAGIDLSPLLLEGEALLDFHAETSLAFMDDLEHRHRPRCLEA 363
            V+ V+  ELP +  +++ S     S+   W+    LGV+ W ++  Y++L LL+G DY VYFVVALLR  Q   V    AG   + ++L+  ++  + A   L FM+ L  RHR   L A
Sbjct:  442 VQLVMSIELPILFMSIQKSATCLWSVVGEWVRCIFLGVLTWNEICHYLLLVLLQGPDYAVYFVVALLRHIQS--VINKHAGSPKALIVLQTVSINGWRAGDHLNFMEVLSRRHRRTVLPA 559
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BLAST of mRNA_H-elongata_contig107426.613.1 vs. uniprot
Match: A0A1S8W0N3_9FUNG (Uncharacterized protein n=3 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W0N3_9FUNG)

HSP 1 Score: 64.7 bits (156), Expect = 1.680e-9
Identity = 37/116 (31.90%), Postives = 67/116 (57.76%), Query Frame = 1 
Query:    1 LVEDVLEEELPHMAAALRGSGWAAGSLAARWMWQCLLGVIDWPDVVAYMVLALLRGYDYQVYFVVALLRAAQPRVVHAASAGIDLSPLLLEGEAL-LDFHAETSLAFMDDLEHRHR 345
            LVE +LE+ELP +++A   SG     +  RW  +   G++ + ++  ++++ L+ G DYQVYF +AL+R  Q R++ AA     L  L+  GE +   F +  ++ ++ ++  RHR
Sbjct: 1271 LVEFILEDELPMISSAFLLSGCTPTQMCQRWFREYFWGILPFSEISNFVMICLVFGVDYQVYFAIALIRHNQDRILTAARDQT-LINLMNNGELIGAGFRSSANMDYIHEIRGRHR 1385
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BLAST of mRNA_H-elongata_contig107426.613.1 vs. uniprot
Match: A0A6L5D2D5_9INSE (Uncharacterized protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5D2D5_9INSE)

HSP 1 Score: 49.3 bits (116), Expect = 4.570e-5
Identity = 29/101 (28.71%), Postives = 50/101 (49.50%), Query Frame = 1 
Query:   91 WMWQCLLGVIDWPDVVAYMVLALLRGYDYQVYFVVALLRAAQPRVVHAASAGIDLSPLLLEGEALLDFHAETSLAFMDDLEHRHRPRCLEATRAFLARADS 393
            W+ +C  GV+DWP V  +++LA+L   D  +Y  VA+LR ++ R++      + L            F+   +L  ++ L  RHR + L   +A L  + S
Sbjct:    5 WLRRCFWGVLDWPGVTQWLMLAILTEPDTVLYLAVAMLRFSRARILALGPPVVSLDR----------FNVGEALPLIETLTRRHRHKVLPYLQAALTASTS 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107426.613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LGY7_ECTSI5.300e-4866.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJF3_9PHAE1.120e-4666.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5B7GTH1_PORTR3.200e-1134.17Protein broad-minded n=1 Tax=Portunus tritubercula... [more]
A0A423U4N1_PENVA1.130e-935.83Uncharacterized protein (Fragment) n=5 Tax=Penaeus... [more]
A0A1S8W0N3_9FUNG1.680e-931.90Uncharacterized protein n=3 Tax=Batrachochytrium s... [more]
A0A6L5D2D5_9INSE4.570e-528.71Uncharacterized protein n=1 Tax=Ephemera danica Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107426contigH-elongata_contig107426:1099..1815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score84.7
Seed ortholog evalue3.5e-14
Seed eggNOG ortholog7668.SPU_009333-tr
EggNOG free text desc.smoothened signaling pathway involved in dorsal/ventral neural tube patterning
EggNOG OGs2C77R@1,2QR93@2759,38C3V@33154,3BB2Y@33208,3CSD8@33213
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUncharacterised protein family UPF0183
Ec32 orthologEc-14_001430.1
Exons2
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929604.3356824-CDS-H-elongata_contig107426:1098..12781622929604.3356824-CDS-H-elongata_contig107426:1098..1278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107426 1099..1278 +
1691679088.1382267-CDS-H-elongata_contig107426:1098..12781691679088.1382267-CDS-H-elongata_contig107426:1098..1278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107426 1099..1278 +
1622929604.3554156-CDS-H-elongata_contig107426:1599..18151622929604.3554156-CDS-H-elongata_contig107426:1599..1815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107426 1600..1815 +
1691679088.1494691-CDS-H-elongata_contig107426:1599..18151691679088.1494691-CDS-H-elongata_contig107426:1599..1815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107426 1600..1815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107426.613.1prot_H-elongata_contig107426.613.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107426 1099..1815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107426.613.1

>prot_H-elongata_contig107426.613.1 ID=prot_H-elongata_contig107426.613.1|Name=mRNA_H-elongata_contig107426.613.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
LVEDVLEEELPHMAAALRGSGWAAGSLAARWMWQCLLGVIDWPDVVAYMV
LALLRGYDYQVYFVVALLRAAQPRVVHAASAGIDLSPLLLEGEALLDFHA
ETSLAFMDDLEHRHRPRCLEATRAFLARADS*
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mRNA from alignment at H-elongata_contig107426:1099..1815+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107426.613.1 ID=mRNA_H-elongata_contig107426.613.1|Name=mRNA_H-elongata_contig107426.613.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=717bp|location=Sequence derived from alignment at H-elongata_contig107426:1099..1815+ (Himanthalia elongata Himel1 dioecious)
CTCGTAGAAGATGTGCTGGAGGAGGAGTTACCGCACATGGCGGCGGCGTT
GCGGGGATCAGGGTGGGCGGCGGGATCCCTCGCGGCGCGATGGATGTGGC
AGTGCCTTCTTGGCGTCATCGACTGGCCAGACGTGGTGGCGTACATGGTG
CTAGCGCTGTTACGGGGGTACGACTACCAGGTAACCGTGTGTCGATACCG
AACTATTTTCCCCTTTTCTCTGTGGCATAGTGGTCTCTTGATGAAAAGGC
ACGGCGTATGTGATCGGTGGAGAAGGTAGGCTTCTTGGTACCATTACGTG
CATGGAAACTTGCTGTTGTGATGTTTGTTGAGGGCCCCAGCGTCAACTGT
AGCTTTGTCGTCACTGCGCGTGCGCCAACTATTTTTGAAGGCAAGAGGGT
CGCGGCGGGCTTCCTCTACGCCTACGATCCGTCCCCCCTTGACAACCAGC
AGCCGACACCGTCTCTTCCCTCCCCTGCTCCTGTAAAAAACCACCGTGTA
GGTATACTTCGTTGTTGCCCTCCTCAGGGCGGCTCAGCCCCGCGTCGTGC
ATGCCGCGTCCGCGGGCATCGACCTCTCGCCGCTGCTCCTTGAGGGCGAA
GCACTCTTGGATTTCCACGCGGAGACTTCGTTGGCTTTCATGGACGATTT
GGAACATCGGCATCGTCCTCGGTGCCTCGAAGCGACGCGGGCGTTTCTCG
CCCGCGCGGACAGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig107426:1099..1815+

>mRNA_H-elongata_contig107426.613.1 ID=mRNA_H-elongata_contig107426.613.1|Name=mRNA_H-elongata_contig107426.613.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig107426:1099..1815+ (Himanthalia elongata Himel1 dioecious)
CTCGTAGAAGATGTGCTGGAGGAGGAGTTACCGCACATGGCGGCGGCGTT
GCGGGGATCAGGGTGGGCGGCGGGATCCCTCGCGGCGCGATGGATGTGGC
AGTGCCTTCTTGGCGTCATCGACTGGCCAGACGTGGTGGCGTACATGGTG
CTAGCGCTGTTACGGGGGTACGACTACCAGCTCGTAGAAGATGTGCTGGA
GGAGGAGTTACCGCACATGGCGGCGGCGTTGCGGGGATCAGGGTGGGCGG
CGGGATCCCTCGCGGCGCGATGGATGTGGCAGTGCCTTCTTGGCGTCATC
GACTGGCCAGACGTGGTGGCGTACATGGTGCTAGCGCTGTTACGGGGGTA
CGACTACCAGGTATACTTCGTTGTTGCCCTCCTCAGGGCGGCTCAGCCCC
GCGTCGTGCATGCCGCGTCCGCGGGCATCGACCTCTCGCCGCTGCTCCTT
GAGGGCGAAGCACTCTTGGATTTCCACGCGGAGACTTCGTTGGCTTTCAT
GGACGATTTGGAACATCGGCATCGTCCTCGGTGCCTCGAAGCGACGCGGG
CGTTTCTCGCCCGCGCGGACAGCTGAGTATACTTCGTTGTTGCCCTCCTC
AGGGCGGCTCAGCCCCGCGTCGTGCATGCCGCGTCCGCGGGCATCGACCT
CTCGCCGCTGCTCCTTGAGGGCGAAGCACTCTTGGATTTCCACGCGGAGA
CTTCGTTGGCTTTCATGGACGATTTGGAACATCGGCATCGTCCTCGGTGC
CTCGAAGCGACGCGGGCGTTTCTCGCCCGCGCGGACAGCTGA
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