mRNA_H-elongata_contig10736.607.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Match: A0A6H5JXK5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK5_9PHAE) HSP 1 Score: 117 bits (294), Expect = 3.680e-26 Identity = 59/104 (56.73%), Postives = 77/104 (74.04%), Query Frame = 1
Query: 88 RSWELVNPSTAPRSGADVTMATRTSVPHFAELLRGQNVTELVRITPLTPHTEYGHLVALGSVGFCLCTCLRLLIDALCCRHGLKAMYGKELS-FNGACIAPRWR 396
RS ELV+PS + +TM +RTSVPHFA+LLRGQNV +VRI+ +TP +E+GHLVA+GS GF LCTCLR L+ L C H +KA++ + ++ FNGA I P WR
Sbjct: 653 RSGELVDPSHETPDASGITMVSRTSVPHFADLLRGQNVDAVVRISKITPPSEFGHLVAVGSDGFFLCTCLRQLVYGLLCPHVIKALWSQRITRFNGASIGPWWR 756
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Match: D8LSE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE5_ECTSI) HSP 1 Score: 115 bits (289), Expect = 4.760e-26 Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 1
Query: 91 SWELVNPSTAPRSGADVTMATRTSVPHFAELLRGQNVTELVRITPLTPHTEYGHLVALGSVGFCLCTCLRLLIDALCCRHGLKAM-YGKELSFNGACIAPRWR 396
S ELV+PS A V+M +RTSVPHFAELLR QNV +VRITP++ +E GHLVALG GF LCTCLR L+ L C H +KA+ Y + FNGA I+PRWR
Sbjct: 106 SGELVDPSIPTSEAAGVSMVSRTSVPHFAELLRDQNVHTVVRITPMSTASECGHLVALGPDGFFLCTCLRQLVYGLLCPHAIKALWYQRASQFNGATISPRWR 208
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Match: D7FVI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI8_ECTSI) HSP 1 Score: 115 bits (289), Expect = 8.500e-26 Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 1
Query: 91 SWELVNPSTAPRSGADVTMATRTSVPHFAELLRGQNVTELVRITPLTPHTEYGHLVALGSVGFCLCTCLRLLIDALCCRHGLKAM-YGKELSFNGACIAPRWR 396
S ELV+PS A V+M +RTSVPHFAELLR QNV +VRITP++ +E GHLVALG GF LCTCLR L+ L C H +KA+ Y + FNGA I+PRWR
Sbjct: 239 SGELVDPSIPTSEAAGVSMVSRTSVPHFAELLRDQNVHTVVRITPMSTASECGHLVALGPDGFFLCTCLRQLVYGLLCPHAIKALWYQRASQFNGATISPRWR 341
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Match: A0A6H5JB23_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB23_9PHAE) HSP 1 Score: 115 bits (288), Expect = 2.050e-25 Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 1
Query: 91 SWELVNPSTAPRSGADVTMATRTSVPHFAELLRGQNVTELVRITPLTPHTEYGHLVALGSVGFCLCTCLRLLIDALCCRHGLKAMYGKELS-FNGACIAPRWR 396
S +L++P A A V+M +RTSVPHFA LLR QNV +VR++ +TP +E+GHLVALG GF LCTCLR L L C HGLKAM+ + + FNGA I+PRWR
Sbjct: 562 SGDLIDPLQATTGAAGVSMVSRTSVPHFAHLLRDQNVNSVVRVSMITPPSEFGHLVALGPDGFFLCTCLRQLEHGLLCPHGLKAMWTEGVDRFNGATISPRWR 664
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Match: D8LJH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH3_ECTSI) HSP 1 Score: 115 bits (287), Expect = 2.440e-25 Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 1
Query: 91 SWELVNPSTAPRSGADVTMATRTSVPHFAELLRGQNVTELVRITPLTPHTEYGHLVALGSVGFCLCTCLRLLIDALCCRHGLKAM-YGKELSFNGACIAPRWR 396
S ELV+PS A V+M +RTSVPHFAELLR QNV +VRITP++ +E GHLVALG GF LCTCLR L+ L C H +KA+ Y + FNGA I+PRWR
Sbjct: 239 SGELVDPSIPTSEAACVSMVSRTSVPHFAELLRDQNVHTVVRITPMSTASECGHLVALGPDGFFLCTCLRQLVYGLLCPHAIKALWYQRASQFNGATISPRWR 341
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Match: A0A6H5KDY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDY3_9PHAE) HSP 1 Score: 113 bits (283), Expect = 4.240e-25 Identity = 55/90 (61.11%), Postives = 64/90 (71.11%), Query Frame = 1
Query: 127 SGADVTMATRTSVPHFAELLRGQNVTELVRITPLTPHTEYGHLVALGSVGFCLCTCLRLLIDALCCRHGLKAMYGKELSFNGACIAPRWR 396
+ D TMATRTSVPH+ +LL GQ V ELVR+TPL +EYGHLVAL GF LCTCLR L+ L CRH + AM+ K FNGA + PRWR
Sbjct: 138 TATDDTMATRTSVPHYVDLLDGQGVEELVRVTPLMSASEYGHLVALAPAGFYLCTCLRQLVHGLVCRHAIIAMHKKPGGFNGASVHPRWR 227
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Match: A0A6H5JRX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRX3_9PHAE) HSP 1 Score: 111 bits (277), Expect = 2.700e-24 Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 1
Query: 34 DTWLRL*RLVTTTCSAYL----RSWELVNPSTAPRSGADVTMATRTSVPHFAELLRGQNVTELVRITPLTPHTEYGHLVALGSVGFCLCTCLRLLIDALCCRHGLKAMYGKEL-SFNGACIAPRW 393
+ W L L A L S EL++PS V+ +RTSVPHFA+LLR QNV +VR++ + P +E+GHLVALG GF LCTCLR L+ L C HGLKA++ + + SF GA I+PRW
Sbjct: 121 EAWRLLDELAANPAKAKLCYDTSSGELIDPSQPTTEAPGVSTVSRTSVPHFADLLRDQNVNAVVRVSMIAPPSEFGHLVALGPDGFFLCTCLRQLVYGLLCPHGLKALWAEGVVSFKGATISPRW 245
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Match: A0A6H5KQ14_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ14_9PHAE) HSP 1 Score: 110 bits (276), Expect = 5.530e-24 Identity = 60/107 (56.07%), Postives = 70/107 (65.42%), Query Frame = 1
Query: 91 SWELVNPSTAPRSGADVTMATRTSVPHFAELLRGQNVTELVRITPLTPHTEYGHLVALGSVGFCLCTCLRLLIDALCCRHGLKAMY-----GKELSFNGACIAPRWR 396
S E ++P A VTMATRTSV HFA+LL QNV ELVRIT +E+GHLVALG GF LCTCLR+L+ L C H +KA+ K SFN ACI+PRWR
Sbjct: 340 SGEFIDPGGEAAGPAHVTMATRTSVAHFADLLHDQNVEELVRITIFNAQSEFGHLVALGPDGFFLCTCLRMLVYGLPCPHCIKALAHMRGNDKVFSFNAACISPRWR 446
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Match: A0A6H5JGY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY2_9PHAE) HSP 1 Score: 108 bits (269), Expect = 7.730e-23 Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 1
Query: 91 SWELVNPSTAPRSGADVTMATRTSVPHFAELLRGQNVTELVRITPLTPHTEYGHLVALGSVGFCLCTCLRLLIDALCCRHGLKAMYGKEL-SFNGACIAPRWR 396
S + ++PS V+M +RTSVPH A+LLR QNV +VR++ +TP +EY HLVALG GF LCTCLR L+ L C HGL+A++ + + SFNGA I+PRWR
Sbjct: 805 SGDPMDPSQPTTEAPGVSMVSRTSVPHVADLLRDQNVNAVVRVSMITPLSEYSHLVALGPDGFFLCTCLRQLVYGLLCPHGLEALWAEGVVSFNGAIISPRWR 907
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Match: A0A6H5K1S8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S8_9PHAE) HSP 1 Score: 104 bits (259), Expect = 1.400e-21 Identity = 53/88 (60.23%), Postives = 64/88 (72.73%), Query Frame = 1
Query: 136 DVTMATRTSVPHFAELLRGQNVTELVRIT-PLTPHTEYGHLVALGSVGFCLCTCLRLLIDALCCRHGLKAMYGKELSFNGACIAPRWR 396
DVT+ATRTS+ FAELL+ Q + LVR++ T+Y LVALG GF LCTCLR+L+D L CRH L+AM G +L F GACIAPRWR
Sbjct: 280 DVTLATRTSIEFFAELLKDQVLDRLVRVSRSFGDQTKYCQLVALGPDGFFLCTCLRILVDGLGCRHALRAMRGTDLGFTGACIAPRWR 367 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10736.607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10736.607.1 >prot_H-elongata_contig10736.607.1 ID=prot_H-elongata_contig10736.607.1|Name=mRNA_H-elongata_contig10736.607.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp MVSRPCTARNSASMEHALHPGGVDDGSAGRQACEAIGDRDGGVRAVPARRback to top mRNA from alignment at H-elongata_contig10736:7988..8845- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10736.607.1 ID=mRNA_H-elongata_contig10736.607.1|Name=mRNA_H-elongata_contig10736.607.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=858bp|location=Sequence derived from alignment at H-elongata_contig10736:7988..8845- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10736:7988..8845- >mRNA_H-elongata_contig10736.607.1 ID=mRNA_H-elongata_contig10736.607.1|Name=mRNA_H-elongata_contig10736.607.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig10736:7988..8845- (Himanthalia elongata Himel1 dioecious)back to top |