mRNA_H-elongata_contig107342.606.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107342.606.1
Unique NamemRNA_H-elongata_contig107342.606.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig107342.606.1 vs. uniprot
Match: UPI001C1A7FCD (Hypothetical protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1A7FCD)

HSP 1 Score: 48.9 bits (115), Expect = 9.980e-5
Identity = 23/64 (35.94%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:   58 HIAERIAAELTTVMKQYEIETSVVAITTDTAANIKKAGTQLLPQQEWHDCAAHKIELALRPGLI 249
            H A+ I   L  +++++ +   V  ITTD AAN+KKA + +    EW +C+AH ++L +  GL+
Sbjct:  219 HTAQHITESLEEILEKWNLRDKVFTITTDNAANMKKAISNM-NAVEWQECSAHILQLIIGKGLV 281
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107342.606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001C1A7FCD9.980e-535.94Hypothetical protein n=2 Tax=Rhizophagus irregular... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107342contigH-elongata_contig107342:1808..2056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929603.6176207-CDS-H-elongata_contig107342:1807..20561622929603.6176207-CDS-H-elongata_contig107342:1807..2056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107342 1808..2056 -
1691679087.8889472-CDS-H-elongata_contig107342:1807..20561691679087.8889472-CDS-H-elongata_contig107342:1807..2056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107342 1808..2056 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107342.606.1prot_H-elongata_contig107342.606.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107342 1808..2056 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107342.606.1

>prot_H-elongata_contig107342.606.1 ID=prot_H-elongata_contig107342.606.1|Name=mRNA_H-elongata_contig107342.606.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
CSIQVRSPISYIMPEFPGSHIAERIAAELTTVMKQYEIETSVVAITTDTA
ANIKKAGTQLLPQQEWHDCAAHKIELALRPGLI
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mRNA from alignment at H-elongata_contig107342:1808..2056-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107342.606.1 ID=mRNA_H-elongata_contig107342.606.1|Name=mRNA_H-elongata_contig107342.606.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at H-elongata_contig107342:1808..2056- (Himanthalia elongata Himel1 dioecious)
TGTTCTATCCAGGTTAGAAGCCCAATATCATATATAATGCCCGAGTTTCC
TGGCTCTCACATCGCCGAGCGTATCGCAGCGGAGCTGACCACTGTAATGA
AGCAGTATGAGATCGAAACGAGTGTAGTCGCCATCACTACGGATACCGCA
GCAAATATCAAGAAAGCTGGCACGCAGCTCCTGCCTCAACAGGAATGGCA
CGATTGCGCAGCTCACAAGATCGAGCTGGCGCTTAGGCCGGGTCTTATC
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Coding sequence (CDS) from alignment at H-elongata_contig107342:1808..2056-

>mRNA_H-elongata_contig107342.606.1 ID=mRNA_H-elongata_contig107342.606.1|Name=mRNA_H-elongata_contig107342.606.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig107342:1808..2056- (Himanthalia elongata Himel1 dioecious)
TGTTCTATCCAGGTTAGAAGCCCAATATCATATATAATGCCCGAGTTTCC
TGGCTCTCACATCGCCGAGCGTATCGCAGCGGAGCTGACCACTGTAATGA
AGCAGTATGAGATCGAAACGAGTGTAGTCGCCATCACTACGGATACCGCA
GCAAATATCAAGAAAGCTGGCACGCAGCTCCTGCCTCAACAGGAATGGCA
CGATTGCGCAGCTCACAAGATCGAGCTGGCGCTTAGGCCGGGTCTTATCT
GTTCTATCCAGGTTAGAAGCCCAATATCATATATAATGCCCGAGTTTCCT
GGCTCTCACATCGCCGAGCGTATCGCAGCGGAGCTGACCACTGTAATGAA
GCAGTATGAGATCGAAACGAGTGTAGTCGCCATCACTACGGATACCGCAG
CAAATATCAAGAAAGCTGGCACGCAGCTCCTGCCTCAACAGGAATGGCAC
GATTGCGCAGCTCACAAGATCGAGCTGGCGCTTAGGCCGGGTCTTATC
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