mRNA_H-elongata_contig107324.604.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107324.604.1
Unique NamemRNA_H-elongata_contig107324.604.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig107324.604.1 vs. uniprot
Match: A0A5J4Y1M7_9CHLO (Eukaryotic translation initiation factor 2 subunit 3-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y1M7_9CHLO)

HSP 1 Score: 89.4 bits (220), Expect = 1.900e-20
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:   19 QRLDTLEPSKLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 162
            Q L TL+PSKLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ
Sbjct:   10 QNLKTLDPSKLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 57
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BLAST of mRNA_H-elongata_contig107324.604.1 vs. uniprot
Match: A0A7S2G0C5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G0C5_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 5.940e-20
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:   19 QRLDTLEPSKLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 162
            Q L+ L+P+KLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ
Sbjct:   18 QDLENLDPAKLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 65
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BLAST of mRNA_H-elongata_contig107324.604.1 vs. uniprot
Match: A0A6U2E599_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2E599_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 7.490e-20
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:   10 ILPQRLDTLEPSKLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 162
            ++PQ   T++P+KLT LTPEVISRQATIN+GTIGHVAHGKSTVVKAISGVQ
Sbjct:   34 LMPQDAKTVDPAKLTALTPEVISRQATINVGTIGHVAHGKSTVVKAISGVQ 84
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BLAST of mRNA_H-elongata_contig107324.604.1 vs. uniprot
Match: A0A6P6Y6A6_DERPT (Protein-synthesizing GTPase n=5 Tax=Psoroptidia TaxID=223472 RepID=A0A6P6Y6A6_DERPT)

HSP 1 Score: 90.1 bits (222), Expect = 7.760e-20
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:   19 QRLDTLEPSKLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 162
            Q LDTLE SKLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ
Sbjct:    8 QNLDTLETSKLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 55
[Close]
BLAST of mRNA_H-elongata_contig107324.604.1 vs. uniprot
Match: A0A5J4Y2U5_9CHLO (Protein-synthesizing GTPase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y2U5_9CHLO)

HSP 1 Score: 89.4 bits (220), Expect = 1.500e-19
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:   19 QRLDTLEPSKLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 162
            Q L TL+PSKLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ
Sbjct:   10 QNLKTLDPSKLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 57
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BLAST of mRNA_H-elongata_contig107324.604.1 vs. uniprot
Match: UPI000719BF2A (eukaryotic translation initiation factor 2 subunit 3-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719BF2A)

HSP 1 Score: 82.0 bits (201), Expect = 3.300e-19
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:   19 QRLDTLEPSKLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 162
            Q L TL+  +LTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ
Sbjct:   20 QDLSTLDIKELTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 67
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BLAST of mRNA_H-elongata_contig107324.604.1 vs. uniprot
Match: A0A1A9X442_9MUSC (Uncharacterized protein n=1 Tax=Glossina brevipalpis TaxID=37001 RepID=A0A1A9X442_9MUSC)

HSP 1 Score: 81.3 bits (199), Expect = 5.520e-19
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:   19 QRLDTLEPSKLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 162
            Q L  LE S LTPL+PEVISRQATINIGTIGHVAHGKSTVVKAISGVQ
Sbjct:   17 QDLSNLEVSNLTPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 64
[Close]
BLAST of mRNA_H-elongata_contig107324.604.1 vs. uniprot
Match: A0A835YYS7_9STRA (Protein-synthesizing GTPase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYS7_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.720e-19
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:   19 QRLDTLEPSKLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 162
            Q L TL+P+KLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ
Sbjct:   46 QDLSTLDPAKLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 93
[Close]
BLAST of mRNA_H-elongata_contig107324.604.1 vs. uniprot
Match: A0A0D2KP87_9CHLO (Eukaryotic translation initiation factor 2 subunit 3 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2KP87_9CHLO)

HSP 1 Score: 82.4 bits (202), Expect = 6.710e-19
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:   19 QRLDTLEPSKLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 162
            Q L TL+P+ LTPL+PEVISRQATINIGTIGHVAHGKSTVVKAI+GVQ
Sbjct:   10 QDLKTLDPAALTPLSPEVISRQATINIGTIGHVAHGKSTVVKAITGVQ 57
[Close]
BLAST of mRNA_H-elongata_contig107324.604.1 vs. uniprot
Match: A0A1S3D8E8_DIACI (eukaryotic translation initiation factor 2 subunit 3-like n=1 Tax=Diaphorina citri TaxID=121845 RepID=A0A1S3D8E8_DIACI)

HSP 1 Score: 84.0 bits (206), Expect = 9.330e-19
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:   19 QRLDTLEPSKLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 162
            Q L TL+ +KLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ
Sbjct:   22 QDLSTLDITKLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 69
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107324.604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5J4Y1M7_9CHLO1.900e-2093.75Eukaryotic translation initiation factor 2 subunit... [more]
A0A7S2G0C5_9STRA5.940e-2089.58Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A6U2E599_9STRA7.490e-2080.39Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A6P6Y6A6_DERPT7.760e-2095.83Protein-synthesizing GTPase n=5 Tax=Psoroptidia Ta... [more]
A0A5J4Y2U5_9CHLO1.500e-1993.75Protein-synthesizing GTPase n=1 Tax=Trebouxia sp. ... [more]
UPI000719BF2A3.300e-1987.50eukaryotic translation initiation factor 2 subunit... [more]
A0A1A9X442_9MUSC5.520e-1987.50Uncharacterized protein n=1 Tax=Glossina brevipalp... [more]
A0A835YYS7_9STRA5.720e-1991.67Protein-synthesizing GTPase n=2 Tax=Tribonema minu... [more]
A0A0D2KP87_9CHLO6.710e-1985.42Eukaryotic translation initiation factor 2 subunit... [more]
A0A1S3D8E8_DIACI9.330e-1989.58eukaryotic translation initiation factor 2 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107324contigH-elongata_contig107324:210..371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score85.1
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog27923.ML052318a-PA
Preferred nameeIF-2gamma
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K03242,ko:K11419
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko03013,map00310,map03013
GOsGO:0001731,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016282,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070993,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.translation initiation factor activity
EggNOG OGs38FY1@33154,3BHNA@33208,COG3276@1,KOG0466@2759
EC2.1.1.43
COG Functional cat.J
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03012,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929603.5070632-CDS-H-elongata_contig107324:209..3711622929603.5070632-CDS-H-elongata_contig107324:209..371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107324 210..371 -
1691679087.8449974-CDS-H-elongata_contig107324:209..3711691679087.8449974-CDS-H-elongata_contig107324:209..371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107324 210..371 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107324.604.1prot_H-elongata_contig107324.604.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107324 210..371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107324.604.1

>prot_H-elongata_contig107324.604.1 ID=prot_H-elongata_contig107324.604.1|Name=mRNA_H-elongata_contig107324.604.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
MYFILPQRLDTLEPSKLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAI
SGVQ
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mRNA from alignment at H-elongata_contig107324:210..371-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107324.604.1 ID=mRNA_H-elongata_contig107324.604.1|Name=mRNA_H-elongata_contig107324.604.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig107324:210..371- (Himanthalia elongata Himel1 dioecious)
ATGTACTTTATACTCCCGCAGAGATTGGATACATTGGAACCGTCCAAGCT
TACCCCTCTCACGCCGGAGGTGATCAGCCGGCAGGCCACCATTAACATCG
GCACTATCGGGCACGTGGCCCACGGCAAATCGACGGTTGTCAAGGCCATC
TCGGGAGTTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig107324:210..371-

>mRNA_H-elongata_contig107324.604.1 ID=mRNA_H-elongata_contig107324.604.1|Name=mRNA_H-elongata_contig107324.604.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig107324:210..371- (Himanthalia elongata Himel1 dioecious)
ATGTACTTTATACTCCCGCAGAGATTGGATACATTGGAACCGTCCAAGCT
TACCCCTCTCACGCCGGAGGTGATCAGCCGGCAGGCCACCATTAACATCG
GCACTATCGGGCACGTGGCCCACGGCAAATCGACGGTTGTCAAGGCCATC
TCGGGAGTTCAGATGTACTTTATACTCCCGCAGAGATTGGATACATTGGA
ACCGTCCAAGCTTACCCCTCTCACGCCGGAGGTGATCAGCCGGCAGGCCA
CCATTAACATCGGCACTATCGGGCACGTGGCCCACGGCAAATCGACGGTT
GTCAAGGCCATCTCGGGAGTTCAG
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