mRNA_H-elongata_contig10730.601.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Match: D7FV68_ECTSI (Probable chromatin remodelling complex ATPase chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV68_ECTSI) HSP 1 Score: 350 bits (898), Expect = 1.910e-108 Identity = 183/203 (90.15%), Postives = 193/203 (95.07%), Query Frame = 1
Query: 1 VVERAQQKLKLDAMIVQQGRLAENAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMEHGKEKTKALMESKLQISDKGDLLDFSLDGGIATQVYEGVDYSNKANRAEAAGGPVPFQLIDTGKRERKKVPSYKEDNFYRQQQAAAIKKRTVMPKHLRLPRMDECQFYDKKRLEQLHRREEQLFVEAKDKNLLPSDLNSYE 609
VVERAQQKLKLDAMIVQQGRL +NAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIM HGKEKTKALMESKLQ+SDKGDLLDFSLDGGIATQVYEGVDYSNKANRA+A GG VPFQ IDTGKRERKK+ SYKED FYRQQQAAAIK+RT+MPKHLRLPRMDECQFYDKKRLEQLHR+EEQLFVEAK+K LP+DL +YE
Sbjct: 703 VVERAQQKLKLDAMIVQQGRLTDNAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMAHGKEKTKALMESKLQVSDKGDLLDFSLDGGIATQVYEGVDYSNKANRADAGGGAVPFQFIDTGKRERKKIASYKEDTFYRQQQAAAIKRRTMMPKHLRLPRMDECQFYDKKRLEQLHRKEEQLFVEAKEKGDLPNDLTNYE 905
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Match: A0A835YGX5_9STRA (Putative chromatin remodelling complex ATPase chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGX5_9STRA) HSP 1 Score: 207 bits (527), Expect = 6.910e-58 Identity = 123/201 (61.19%), Postives = 157/201 (78.11%), Query Frame = 1
Query: 1 VVERAQQKLKLDAMIVQQGRLAE-NAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMEHGKEKTKALMESKLQISDKGDLLDFSLDGGIATQVYEGVDYSNKANRAEAAGGPVPFQLIDTGKRERKKVPSY--KEDNFYRQQQAAAIKKR-TVMPKHLRLPRMDECQFYDKKRLEQLHRREEQLFVEAKDKNLLPS 591
VVERAQQKLK+DAMIVQQGRL E N KK K++LL+A+RFGAD VFRSK++SI+D DIDAI+ G+++TK + E+++ +DKGD+LDF LDGG+ TQ +EGVDYSN+ANR +A PF IDTGKRERKKV SY E +Q+ AAA +KR T +PKHLRLP+MDE QFYD+KRL +L+ EE+L+ +AK + LPS
Sbjct: 734 VVERAQQKLKMDAMIVQQGRLQEQNNKKFSKDELLEAIRFGADSVFRSKESSISDEDIDAILAAGEKRTKEI-EARISKADKGDMLDFRLDGGLETQRFEGVDYSNRANRIDAG---APF-YIDTGKRERKKVQSYVSSETQGLQQKAAAAARKRGTRLPKHLRLPKMDEWQFYDRKRLTELNELEEELYAKAKQEGKLPS 929
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Match: A0A7S3UVN6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVN6_HETAK) HSP 1 Score: 177 bits (450), Expect = 1.400e-52 Identity = 111/200 (55.50%), Postives = 139/200 (69.50%), Query Frame = 1
Query: 1 VVERAQQKLKLDAMIVQQGRLAENAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMEHGKEKTKALMESKLQISDKGDLLDFSLDGGIATQVYEGVDYSNKANRAEAAGGPVPFQLIDTGKRERKKVPSYK--EDNF---YRQQQAAAI-----KKRTVMPKHLRLPRMDECQFYDKKRLEQLHRREEQLFVEAK 570
VVERAQQKLKLDAM+VQQGRL E KK+ K+ LL A+RFGAD+VFRSK+++ITD DIDAI+E GK KT L E K+Q S+KGDLLDF LDGG +Q +EGVDY ++ R+ G +ID GKRERKKV Y+ +D + +AAA KKR+ +P+ RLPRMD+ Q++ K RLE LH EE+ F E K
Sbjct: 18 VVERAQQKLKLDAMVVQQGRLQEKEKKVSKDDLLSAVRFGADQVFRSKESTITDEDIDAILERGKNKTAELQE-KIQASEKGDLLDFRLDGGFKSQEFEGVDYGDRETRSRMLG------VIDIGKRERKKVVQYQYADDPLAPAHGNAKAAAAAAWSGKKRSRLPRAFRLPRMDDWQWFAKGRLEALHAMEERKFAELK 210
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Match: A0A7S2F963_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F963_9STRA) HSP 1 Score: 187 bits (476), Expect = 2.770e-52 Identity = 110/204 (53.92%), Postives = 142/204 (69.61%), Query Frame = 1
Query: 1 VVERAQQKLKLDAMIVQQGRLAENAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMEHGKEKTKALMESKLQISDKGDLLDFSLDGGIATQVYEGVDYSNKANR-AEAAGGPVPFQLIDTGKRERKKVPSYKEDNFYRQQ--QAAAIKKRTVMPKHLRLPRMDECQFYDKKRLEQLHRREEQLFVEAKDKNLLPSDLNS 603
VVERA QKLKLDAM+VQQGRL + KKL KE +L A++FGAD VFR+ DTSITD DIDAI+E G++KT L KL+ + KGD+LDF LDG + TQVYEGVDYS+ NR + A V Q KR+RK V +Y ED +YR+Q ++ ++ MPKHLRLP+M+E QFYD +L+ LH EE ++E K+K LP + +
Sbjct: 53 VVERAHQKLKLDAMVVQQGRLQDKEKKLSKEDMLAAIKFGADHVFRANDTSITDEDIDAIIERGQKKTSDLF-GKLEEASKGDVLDFKLDGSMPTQVYEGVDYSDSKNRQSNLAELMVLDQATADDKRQRKPVTNYNEDAYYRKQINVGSSDARKVKMPKHLRLPKMEEWQFYDTDKLQSLHALEEARYMELKEKKALPPSIKT 255
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Match: A0A4Q3BVT5_9BACT (SANT domain-containing protein n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q3BVT5_9BACT) HSP 1 Score: 181 bits (459), Expect = 3.200e-52 Identity = 106/200 (53.00%), Postives = 143/200 (71.50%), Query Frame = 1
Query: 1 VVERAQQKLKLDAMIVQQGRLAENAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMEHGKEKTKALMESKLQISDKGDLLDFSLDGGIATQVYEGVDYSNKANRAEAAGGPVPFQLIDTGKRERKKVPSYKEDNFYRQQQAAAIK---KRTVMPKHLRLPRMDECQFYDKKRLEQLHRREEQLFVEAKDKNLLPS 591
VVERAQQKLKLDAM+VQQGRL + KK+ K+ LLD LRFGADK+FRSK+++ITDADID I+E GK +T+ + E KLQ+++KGD+ DF LDGG+ QV+EG DYS ++ E + F ID GKRERK V SY E Q +AAA++ K+ +P+HLRL ++++ QF+D+ RL +L E +LF E +K +PS
Sbjct: 10 VVERAQQKLKLDAMVVQQGRLQDKEKKMSKQDLLDTLRFGADKIFRSKESTITDADIDLILEEGKRRTEEMTE-KLQVAEKGDMYDFRLDGGMGAQVFEGKDYSRDRDKGEK-NPLLNFAFIDPGKRERKTVLSYSES----QPRAAAVEEGEKKPKLPRHLRLNKLEDWQFFDRPRLGELQAEEVRLFDELVEKGEVPS 203
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Match: A0A7S3HIT7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HIT7_9STRA) HSP 1 Score: 174 bits (442), Expect = 1.690e-46 Identity = 104/188 (55.32%), Postives = 134/188 (71.28%), Query Frame = 1
Query: 1 VVERAQQKLKLDAMIVQQGRLAENAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMEHGKEKTKALMESKLQISDKGDLLDFSLDGGIATQVYEGVDYSNKANRAEAAGGPVPFQLIDTGKRERKKVPSYKEDNFYRQQQAAAIK--KRTVMPKHLRLPRMDECQFYDKKRLEQLHRREEQLF 558
VVERAQQKLKLDAM+VQQGRL + KK+ K+ LLD LRFGADK+FRSKD++I+DADID I+E G+++T+ + +KLQ +DKGD+ DF LDGG+ATQV+EGVDYS K R F +D GKRERK V +Y E +A A+ KR +P+HLRL +M++ QF+DK RL L E +LF
Sbjct: 407 VVERAQQKLKLDAMVVQQGRLQDKEKKMTKQDLLDTLRFGADKIFRSKDSTISDADIDLILEEGRKRTEEM--TKLQTNDKGDMYDFKLDGGMATQVFEGVDYSTKDARERELLAQSAF-FLDPGKRERKGVANYSETAT----RAPALDEDKRPKLPRHLRLNKMEDWQFFDKARLTDLQAEEIRLF 587
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Match: A0A7S1USI6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1USI6_9STRA) HSP 1 Score: 173 bits (438), Expect = 5.060e-46 Identity = 115/238 (48.32%), Postives = 156/238 (65.55%), Query Frame = 1
Query: 1 VVERAQQKLKLDAMIVQQGRLAENAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMEHGKEKTKALMESKLQISDKGDLLDFSLDGG-IATQVYEGVDYSNKANRAEAAGGPVPFQLIDTGKRERKKVPSYKEDNFYRQQQAA-------AIKKRTVMPKHLRLPRMDECQFYDKKRLEQLHRREEQLFVEAKDKNLLPSDLNSYEA-----REKERXXXXXXXEPSEQALLL 675
+VERAQQKLKLDAM+VQQGRL E +K+ +++LL+A+RFGADKVF++KD+SITD DID I++ GK+KT L E KLQ +DKGDLLDF LDGG ++ Q +EG+DY+ KA +A+A F ++D GKRER+ V +Y E Y+ Q AA A KK+ +PK LRLPRM+E Q +D+ L+++ EE+ F LLP D+ A +E+E+ P E LL
Sbjct: 218 IVERAQQKLKLDAMVVQQGRLKEK-EKMSRDELLNAVRFGADKVFKTKDSSITDDDIDLILDQGKKKTAELNE-KLQNADKGDLLDFKLDGGGLSAQTFEGIDYA-KAAQAQAE----MFGIMDIGKRERRTVANYNESQLYQNQIAALQGTKKPAKKKQPKLPKSLRLPRMEEYQMFDRTALQKISEEEEKAF------KLLPEDIQKMAAGKIPKKEEEKEEGKEEAAPFEMPPLL 442
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Match: A0A7S2UIC6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UIC6_9STRA) HSP 1 Score: 172 bits (435), Expect = 1.490e-45 Identity = 106/198 (53.54%), Postives = 135/198 (68.18%), Query Frame = 1
Query: 1 VVERAQQKLKLDAMIVQQGRLAENAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMEHGKEKTKALMESKLQISDKGDLLDFSLDGGIATQVYEGVDYSNKANRAEAA-GGPVPFQLI---DTGKRERKKVPSYKEDNFYRQQQA--------AAIKKRTVMPKHLRLPRMDECQFYDKKRLEQLHRREEQLF 558
VVERAQQKLKLDAM+VQQGRL + L E+LL A+RFGADKVF+SKD+SITD DID I++ GK+KT+ + E KLQ ++KGD+LDF LDGGI+TQ +EG+DYS + +A V +L+ D GKRER+ V +Y ED Y+QQ A KK T +PK+LRLPRM+E Q +D+ L L EE F
Sbjct: 673 VVERAQQKLKLDAMVVQQGRLKDKDS-LSSEELLAAVRFGADKVFKSKDSSITDDDIDMILDQGKKKTQEMNE-KLQNAEKGDMLDFKLDGGISTQTFEGIDYSQRGKDMDAVKAAQVQAELLGIMDMGKRERRTVANYNEDQLYKQQIALQQGGRVKVRKKKETRLPKYLRLPRMEEWQMFDRDALLALQEMEENAF 868
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Match: A0A7S2LAQ2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LAQ2_9STRA) HSP 1 Score: 169 bits (429), Expect = 9.400e-45 Identity = 101/209 (48.33%), Postives = 139/209 (66.51%), Query Frame = 1
Query: 1 VVERAQQKLKLDAMIVQQGRLAENAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMEHGKEKTKALMESKLQISDKGDLLDFSLDGGIATQVYEGVDYSNKANRAEAAGGPVPFQLIDTGKRERKKVPSYKEDNFYRQQQAAAI------KKRTVMPKHLRLPRMDECQFYDKKRLEQLHRREEQLFVEAKDKNLLPSDLNSYE 609
+VERAQQKLKLDAM+VQQGRL + KL +++L A+RFGADK+F+S D+SIT+ DID I++ GK+KT+A+ E KL++++KGDLLDF LD G + Q +EGVDYS+ +R+E G ++D GKRER V +Y E Y+Q + KK +PK LRLPRMDE Q +D+ L + EE+ + D+ LP+DL E
Sbjct: 424 IVERAQQKLKLDAMVVQQGRLKDAKAKLSSDEILKAVRFGADKIFKSTDSSITNDDIDLILDAGKKKTEAMNE-KLKVAEKGDLLDFKLDVGESLQTFEGVDYSHAQSRSEILG------ILDLGKRERNVVANYNESVLYKQVADGGLPKPERKKKEKRLPKFLRLPRMDEWQMFDRDTLNIIQLEEEKEYKRLADEGKLPTDLTKVE 625
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Match: B8C4D6_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4D6_THAPS) HSP 1 Score: 167 bits (424), Expect = 4.190e-44 Identity = 106/216 (49.07%), Postives = 140/216 (64.81%), Query Frame = 1
Query: 1 VVERAQQKLKLDAMIVQQGRLAENAKKLGKEQLLDALRFGADKVFRSKDTSITDADIDAIMEHGKEKTKALMESKLQISDKGDLLDFSLDGGIATQVYEGVDYSNKANRAEAAGGPVPFQLIDTGKRERKKVPSYKEDNFYRQQQAAA--------IKKRTVMPKHLRLPRMDECQFYDKKRLEQLHRREEQLFVEAKDKNLLPSDLNSYEAREKE 624
VVERAQQKLKLDAM+VQQGRL + K L +E+LLDA+RFGADK+F+SKD+SITD DID I+ +G +KT+ L + KLQ + KGD+LDF LDGG++ Q +EG+DYS +A A+ + ++D GKRER+ V +Y E+ Y QQ A +KK +PK RLPRM+E Q +D+ L L EEQ F LP D+ + E E
Sbjct: 587 VVERAQQKLKLDAMVVQQGRLKDKDK-LSREELLDAVRFGADKIFKSKDSSITDDDIDIILGYGAKKTQELND-KLQAAQKGDMLDFKLDGGLSAQTFEGIDYSEEAKNAQFQAEILG--IMDVGKRERRTV-AYNENQLYMQQMAQQGANPPKKKVKKEIKLPKMFRLPRMEEWQMFDRDSLNALQEVEEQAF------RALPEDIQETKEGEAE 791 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10730.601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10730.601.1 >prot_H-elongata_contig10730.601.1 ID=prot_H-elongata_contig10730.601.1|Name=mRNA_H-elongata_contig10730.601.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp VVERAQQKLKLDAMIVQQGRLAENAKKLGKEQLLDALRFGADKVFRSKDTback to top mRNA from alignment at H-elongata_contig10730:718..4630+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10730.601.1 ID=mRNA_H-elongata_contig10730.601.1|Name=mRNA_H-elongata_contig10730.601.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3913bp|location=Sequence derived from alignment at H-elongata_contig10730:718..4630+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10730:718..4630+ >mRNA_H-elongata_contig10730.601.1 ID=mRNA_H-elongata_contig10730.601.1|Name=mRNA_H-elongata_contig10730.601.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig10730:718..4630+ (Himanthalia elongata Himel1 dioecious)back to top |