mRNA_H-elongata_contig107274.598.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107274.598.1
Unique NamemRNA_H-elongata_contig107274.598.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig107274.598.1 vs. uniprot
Match: A0A1X7UV95_AMPQE (Uncharacterized protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UV95_AMPQE)

HSP 1 Score: 79.0 bits (193), Expect = 6.720e-13
Identity = 77/306 (25.16%), Postives = 131/306 (42.81%), Query Frame = 1 
Query:   34 MRMAVHIVEMENAVQQFPYLARLV--RACDGS----VFQNPTYENSAGAWAFIEVLGKAYLHQVGEALDASDFLGLQVDESTDISDSNNCLI------------------------------------DGAAAMTWSRSGAATILAQEQPHRLLFHCVVHRQSLGAQAACLEVALTKEVDAVVTAVNGFFSHSSVRKGNLKIIQVANAIGGKNLPTLEGIYKIRFLSRGIAVESLCANYHAILIFMAEEAGQFFV-----LLERIASFQVMGMLLFMTDVLAILNSFNRFFQYRLLSYGDIRATLN 810
            MR    I   E A+ ++  L  LV  R C       V +N  Y +   A   +E +          +L AS F+G+ VDE TDI+  +N ++                                    DGA AMT  R G    + +  P+ +  HC+ +R SL    A  ++   +    V+ ++  +FSHSSVR   L+ IQ  N +    L   + +Y +R+LS  IAV ++     A++ F   EA Q+       L ++++++Q +     + DVL I+   ++ FQ   +++  I+  +N
Sbjct:    1 MRNIYWIATEEVALLKYESLNELVQIRGCAALKELFVTKNAQYSSHQIAEEMLEAISSCIEESTDLSLQASPFIGVMVDECTDIATVSNPIVYAKTFKDGDVHTNFLKCMQMEEDKAITLEKVLGLSTDGARAMTGLREGLTGYMKRANPYIVPIHCIAYRLSLATSQASKQITCLQRYKRVLVSIYSYFSHSSVRLDRLREIQ--NVLDSPVLKYKQ-LYYVRWLSLHIAVSAVQRTLPALISFFDNEASQYEDPAARGLTKQLSTYQFITTTNLLCDVLDIITRLSKIFQGTNIAFSIIQLMVN 303
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BLAST of mRNA_H-elongata_contig107274.598.1 vs. uniprot
Match: F0YST4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YST4_AURAN)

HSP 1 Score: 52.4 bits (124), Expect = 6.100e-5
Identity = 43/148 (29.05%), Postives = 72/148 (48.65%), Query Frame = 1 
Query:  202 QVGEALDASDFLGLQVDESTDISDSNNCLIDGAAAMTWSRSGAATILAQEQPHRLLFHCVVHRQSLGAQAACLEVALTKEVDAVVTAVNGFFSHSSVRKGNLKIIQVANAIGGKNLPTLEGIYKIRFLSRGIAVESLCANYHAILIFM 645
            Q  E L  SD+    +DESTD+SDS N  I     + + ++G A+            HC+ HR +L A       +    V+  + A+   F+ SS RK + KI +V +  G     T++  + +R+LSR  A+ S+  ++  +L F+
Sbjct:    1 QFPEELAESDWCAASIDESTDVSDSQNAGI----CVFFVKNGEASCA----------HCICHRLALAANEFAALTSHASVVEKTLRAIRRIFAFSSKRK-DAKIQEVNDESG-----TIKKRHTVRWLSRKGALTSVVGSFRRVLDFV 128
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BLAST of mRNA_H-elongata_contig107274.598.1 vs. uniprot
Match: A0A2J7PBR0_9NEOP (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7PBR0_9NEOP)

HSP 1 Score: 54.7 bits (130), Expect = 8.730e-5
Identity = 54/223 (24.22%), Postives = 91/223 (40.81%), Query Frame = 1 
Query:  172 IEVLGKAYLHQVGEALDASDFLGLQVDESTDISDSNNCLI----------------------------DGAAAMTWSRSGAATILAQEQPHRLLFHCVVHRQSLGAQAACLEVALTKEVDAVVTAVNGFFSHSSVRKGNLKIIQVANAIGGKNLPTLEGIYKIRFLSRGIAVESLCANYHAILIFMAEEAGQFFVLLERIASFQVMGMLLFMTDVLAILNSFN 756
            +E +     + V + +    +  + +DESTD+SD+N  LI                            DGA +MT + SG    L Q Q      HC++H+++L A++  L   +   V  +   + G     + RK    + ++ +A G   L T     ++R+LSRG  +       H I  F+ EE      L   +   + +  L F+TD+   LN  N
Sbjct:   47 LEDISNQISNNVKDIIANCSYFSIALDESTDVSDTNQLLIFVRAIKEDFTIFEELLKVCSLHSTTRVTDGAKSMTGTISGFVGFLRQNQITVPTLHCIIHQEALCAKSIKLSTTMAT-VTKITNLIRGGNRSLTHRKFLTLLEEMDSAYGDLLLHT-----EVRWLSRGKCLVRFFELRHEIATFLREEVTNSAELQNDLEDVEFLRNLAFLTDITQHLNVLN 263
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BLAST of mRNA_H-elongata_contig107274.598.1 vs. uniprot
Match: A0A2J7Q3W1_9NEOP (Dimer_Tnp_hAT domain-containing protein n=26 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7Q3W1_9NEOP)

HSP 1 Score: 54.7 bits (130), Expect = 9.490e-5
Identity = 54/223 (24.22%), Postives = 91/223 (40.81%), Query Frame = 1 
Query:  172 IEVLGKAYLHQVGEALDASDFLGLQVDESTDISDSNNCLI----------------------------DGAAAMTWSRSGAATILAQEQPHRLLFHCVVHRQSLGAQAACLEVALTKEVDAVVTAVNGFFSHSSVRKGNLKIIQVANAIGGKNLPTLEGIYKIRFLSRGIAVESLCANYHAILIFMAEEAGQFFVLLERIASFQVMGMLLFMTDVLAILNSFN 756
            +E +     + V + +    +  + +DESTD+SD+N  LI                            DGA +MT + SG    L Q Q      HC++H+++L A++  L   +   V  +   + G     + RK    + ++ +A G   L T     ++R+LSRG  +       H I  F+ EE      L   +   + +  L F+TD+   LN  N
Sbjct:  148 LEDISNQISNNVKDIIANCSYFSIALDESTDVSDTNQLLIFVRAIKEDFTIFEELLKVCSLHSTTRVTDGAKSMTGTISGFVGFLRQNQITVPTLHCIIHQEALCAKSIKLSTTMAT-VTKITNLIRGGNRSLTHRKFLTLLEEMDSAYGDLLLHT-----EVRWLSRGKCLVRFFELRHEIATFLREEVTNSAELQNDLEDVEFLRNLAFLTDITQHLNVLN 364
[Close]
BLAST of mRNA_H-elongata_contig107274.598.1 vs. uniprot
Match: A0A2J7QY16_9NEOP (RNB domain-containing protein n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7QY16_9NEOP)

HSP 1 Score: 54.7 bits (130), Expect = 9.800e-5
Identity = 54/223 (24.22%), Postives = 91/223 (40.81%), Query Frame = 1 
Query:  172 IEVLGKAYLHQVGEALDASDFLGLQVDESTDISDSNNCLI----------------------------DGAAAMTWSRSGAATILAQEQPHRLLFHCVVHRQSLGAQAACLEVALTKEVDAVVTAVNGFFSHSSVRKGNLKIIQVANAIGGKNLPTLEGIYKIRFLSRGIAVESLCANYHAILIFMAEEAGQFFVLLERIASFQVMGMLLFMTDVLAILNSFN 756
            +E +     + V + +    +  + +DESTD+SD+N  LI                            DGA +MT + SG    L Q Q      HC++H+++L A++  L   +   V  +   + G     + RK    + ++ +A G   L T     ++R+LSRG  +       H I  F+ EE      L   +   + +  L F+TD+   LN  N
Sbjct:   47 LEDISNQISNNVKDIIANCSYFSIALDESTDVSDTNQLLIFVRAIKEDFTIFEELLKVCSLHSTTRVTDGAKSMTGTISGFVGFLRQNQITVPTLHCIIHQEALCAKSIKLSTTMAT-VTKITNLIRGGNRSLTHRKFLTLLEEMDSAYGDLLLHT-----EVRWLSRGKCLVRFFELRHEIATFLREEVTNSAELQNDLEDVEFLRNLAFLTDITQHLNVLN 263
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107274.598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1X7UV95_AMPQE6.720e-1325.16Uncharacterized protein n=2 Tax=Amphimedon queensl... [more]
F0YST4_AURAN6.100e-529.05Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A2J7PBR0_9NEOP8.730e-524.22Dimer_Tnp_hAT domain-containing protein n=2 Tax=Cr... [more]
A0A2J7Q3W1_9NEOP9.490e-524.22Dimer_Tnp_hAT domain-containing protein n=26 Tax=C... [more]
A0A2J7QY16_9NEOP9.800e-524.22RNB domain-containing protein n=2 Tax=Cryptotermes... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107274contigH-elongata_contig107274:369..2002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score72.4
Seed ortholog evalue3.9e-10
Seed eggNOG ortholog400682.PAC_15711139
Preferred nameZNF862
EggNOG free text desc.ZnF_TTF
EggNOG OGs39XVR@33154,3BMWQ@33208,KOG1721@1,KOG1721@2759
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size873
Cds size864
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107274.598.1prot_H-elongata_contig107274.598.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107274 378..2002 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929602.9674325-UTR-H-elongata_contig107274:368..3771622929602.9674325-UTR-H-elongata_contig107274:368..377Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107274 369..377 +
1691679087.5756116-UTR-H-elongata_contig107274:368..3771691679087.5756116-UTR-H-elongata_contig107274:368..377Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107274 369..377 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929602.9826455-CDS-H-elongata_contig107274:377..6581622929602.9826455-CDS-H-elongata_contig107274:377..658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107274 378..658 +
1691679087.5894923-CDS-H-elongata_contig107274:377..6581691679087.5894923-CDS-H-elongata_contig107274:377..658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107274 378..658 +
1622929603.0063972-CDS-H-elongata_contig107274:843..12241622929603.0063972-CDS-H-elongata_contig107274:843..1224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107274 844..1224 +
1691679087.5994947-CDS-H-elongata_contig107274:843..12241691679087.5994947-CDS-H-elongata_contig107274:843..1224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107274 844..1224 +
1622929603.0227091-CDS-H-elongata_contig107274:1800..20021622929603.0227091-CDS-H-elongata_contig107274:1800..2002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107274 1801..2002 +
1691679087.6078525-CDS-H-elongata_contig107274:1800..20021691679087.6078525-CDS-H-elongata_contig107274:1800..2002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107274 1801..2002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107274.598.1

>prot_H-elongata_contig107274.598.1 ID=prot_H-elongata_contig107274.598.1|Name=mRNA_H-elongata_contig107274.598.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=288bp
MSKTLVNTMRMAVHIVEMENAVQQFPYLARLVRACDGSVFQNPTYENSAG
AWAFIEVLGKAYLHQVGEALDASDFLGLQVDESTDISDSNNCLIDGAAAM
TWSRSGAATILAQEQPHRLLFHCVVHRQSLGAQAACLEVALTKEVDAVVT
AVNGFFSHSSVRKGNLKIIQVANAIGGKNLPTLEGIYKIRFLSRGIAVES
LCANYHAILIFMAEEAGQFFVLLERIASFQVMGMLLFMTDVLAILNSFNR
FFQYRLLSYGDIRATLNKTKTQLRVTFLDVNGLQVRI*
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mRNA from alignment at H-elongata_contig107274:369..2002+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107274.598.1 ID=mRNA_H-elongata_contig107274.598.1|Name=mRNA_H-elongata_contig107274.598.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1634bp|location=Sequence derived from alignment at H-elongata_contig107274:369..2002+ (Himanthalia elongata Himel1 dioecious)
AAAGAGAGCATGTCGAAGACTCTGGTCAACACCATGCGGATGGCTGTGCA
CATCGTTGAGATGGAAAATGCAGTCCAGCAATTCCCGTATTTGGCGAGGC
TAGTGAGGGCGTGCGACGGAAGCGTCTTTCAAAATCCGACGTACGAGAAC
TCTGCTGGTGCATGGGCGTTCATCGAAGTGCTCGGGAAAGCGTACCTACA
TCAGGTCGGGGAGGCACTCGACGCGTCCGATTTTCTCGGCTTGCAGGTCG
ACGAGAGCACGGATATATCCGACTCGAACAACTGCTTAATGTTCCTGTAC
ACGAGAAAGACTTCCAGCCGCACGTCGTGATGTTCGCCCTCGCTTCAATG
CACGAGTTGAAGAAGGAGACGAACACGGTGGAGAGAGCTACAGGTCGCCG
AATCGCCGAGGTAATCACCAAGAGGATTCTGGCCGCGAAGGGGGTGACTG
CCCATAAGATTATCGGTTTCGCGAGTGACGGAGCAGCAGCTATGACGTGG
TCGCGGAGTGGAGCGGCGACGATACTGGCTCAGGAGCAACCTCATCGCCT
ACTCTTCCACTGCGTCGTGCACCGGCAGAGCCTTGGAGCGCAAGCTGCTT
GCCTCGAAGTAGCGCTAACGAAGGAAGTGGACGCGGTGGTGACGGCGGTG
AACGGGTTTTTCAGCCACAGCTCCGTCCGGAAGGGCAACCTCAAAATCAT
CCAGGTCGCCAACGCTATTGGTGGGAAAAACCTACCCACCCTTGAAGGGA
TCTACAAGATTCGCTTCCTGAGCAGGGGCATCGCCGTCGAGTCGTTGTGC
GCGAACTACCACGCCATCCTCATATTTATGGCTGAGGAGGCGGGGCAGTT
TTTCGTGTTGGCGCAACGAGCACGGCTGACTACGGCGCTGGAAGCACATC
GCGTCCAGGTCTGCGAGATAGGGTCGACGCGTGCGCTCATTGCGGCGCAA
AAAGAGAGCCAGCGCGGATTCCTTGTCACCCTCAATGCCTTGGAAGGGAG
CACGATCCTGGAGAACCTGGTGATGGTCAACGCGCAAAAGTAAGCAACCG
CGAAAGGTAATAAAACGAGCGCCATCTCGGTGCTTAACAAATGTGTTGTA
GTGAATCACGCGTAGGGTAGACCAGCAAGACTGTAGAGTACGCACGTATG
CACGGGTGTTGGTAGGTAGTAGTTGGCAGGTTGGTACAGTAGTGTGTCTG
GTGTCTGGTCGGTTTGAGCTTTAATCTCACCCCAAATCACGCCTTTGATT
CGGCTAAAACTCGTGCTGTTTGCGTTCCCTCTTGCCCTCCTTTTTCCTTC
ATCATAGCTATCCTCGAGCTTCATGCTCAGGGCGAAACGATCCAGGCCAG
TATAGAAGGACATCACCCAAGTCATCGCCGAGCTAGACGCATTGCAGGAT
CGCCGTGAAAAGGGCAACCCAGTGGCCTTCAGCCTCTTGGAGAGGATAGC
CTCTTTCCAAGTGATGGGCATGTTGTTATTCATGACAGATGTGCTCGCCA
TCCTCAACAGCTTCAACAGGTTTTTCCAGTACCGACTTCTTTCGTACGGT
GACATCAGGGCTACCCTGAACAAAACGAAGACTCAGCTAAGAGTAACGTT
TCTCGACGTAAACGGCTTGCAGGTGAGAATATGA
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Coding sequence (CDS) from alignment at H-elongata_contig107274:369..2002+

>mRNA_H-elongata_contig107274.598.1 ID=mRNA_H-elongata_contig107274.598.1|Name=mRNA_H-elongata_contig107274.598.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1728bp|location=Sequence derived from alignment at H-elongata_contig107274:369..2002+ (Himanthalia elongata Himel1 dioecious)
ATGTCGAAGACTCTGGTCAACACCATGCGGATGGCTGTGCACATCGTTGA
GATGGAAAATGCAGTCCAGCAATTCCCGTATTTGGCGAGGCTAGTGAGGG
CGTGCGACGGAAGCGTCTTTCAAAATCCGACGTACGAGAACTCTGCTGGT
GCATGGGCGTTCATCGAAGTGCTCGGGAAAGCGTACCTACATCAGGTCGG
GGAGGCACTCGACGCGTCCGATTTTCTCGGCTTGCAGGTCGACGAGAGCA
CGGATATATCCGACTCGAACAACTGCTTAATATGTCGAAGACTCTGGTCA
ACACCATGCGGATGGCTGTGCACATCGTTGAGATGGAAAATGCAGTCCAG
CAATTCCCGTATTTGGCGAGGCTAGTGAGGGCGTGCGACGGAAGCGTCTT
TCAAAATCCGACGTACGAGAACTCTGCTGGTGCATGGGCGTTCATCGAAG
TGCTCGGGAAAGCGTACCTACATCAGGTCGGGGAGGCACTCGACGCGTCC
GATTTTCTCGGCTTGCAGGTCGACGAGAGCACGGATATATCCGACTCGAA
CAACTGCTTAATTGACGGAGCAGCAGCTATGACGTGGTCGCGGAGTGGAG
CGGCGACGATACTGGCTCAGGAGCAACCTCATCGCCTACTCTTCCACTGC
GTCGTGCACCGGCAGAGCCTTGGAGCGCAAGCTGCTTGCCTCGAAGTAGC
GCTAACGAAGGAAGTGGACGCGGTGGTGACGGCGGTGAACGGGTTTTTCA
GCCACAGCTCCGTCCGGAAGGGCAACCTCAAAATCATCCAGGTCGCCAAC
GCTATTGGTGGGAAAAACCTACCCACCCTTGAAGGGATCTACAAGATTCG
CTTCCTGAGCAGGGGCATCGCCGTCGAGTCGTTGTGCGCGAACTACCACG
CCATCCTCATATTTATGGCTGAGGAGGCGGGGCAGTTTTTCGTTGACGGA
GCAGCAGCTATGACGTGGTCGCGGAGTGGAGCGGCGACGATACTGGCTCA
GGAGCAACCTCATCGCCTACTCTTCCACTGCGTCGTGCACCGGCAGAGCC
TTGGAGCGCAAGCTGCTTGCCTCGAAGTAGCGCTAACGAAGGAAGTGGAC
GCGGTGGTGACGGCGGTGAACGGGTTTTTCAGCCACAGCTCCGTCCGGAA
GGGCAACCTCAAAATCATCCAGGTCGCCAACGCTATTGGTGGGAAAAACC
TACCCACCCTTGAAGGGATCTACAAGATTCGCTTCCTGAGCAGGGGCATC
GCCGTCGAGTCGTTGTGCGCGAACTACCACGCCATCCTCATATTTATGGC
TGAGGAGGCGGGGCAGTTTTTCGTCCTCTTGGAGAGGATAGCCTCTTTCC
AAGTGATGGGCATGTTGTTATTCATGACAGATGTGCTCGCCATCCTCAAC
AGCTTCAACAGGTTTTTCCAGTACCGACTTCTTTCGTACGGTGACATCAG
GGCTACCCTGAACAAAACGAAGACTCAGCTAAGAGTAACGTTTCTCGACG
TAAACGGCTTGCAGGTGAGAATATGACCTCTTGGAGAGGATAGCCTCTTT
CCAAGTGATGGGCATGTTGTTATTCATGACAGATGTGCTCGCCATCCTCA
ACAGCTTCAACAGGTTTTTCCAGTACCGACTTCTTTCGTACGGTGACATC
AGGGCTACCCTGAACAAAACGAAGACTCAGCTAAGAGTAACGTTTCTCGA
CGTAAACGGCTTGCAGGTGAGAATATGA
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