mRNA_H-elongata_contig107202.595.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107202.595.1
Unique NamemRNA_H-elongata_contig107202.595.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig107202.595.1 vs. uniprot
Match: D7FI84_ECTSI (Sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI84_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 2.910e-41
Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = 2 
Query:    2 SGERVDVMHYHYTDFGMFRWSWQQATVMYEQIMQDNERINYISVLRDPRSHFLSFYYFYVQPEVRLSIQHFYGKAGQ--WLKKQRERLENPMCMEFGIRSEDDLDLFIAMELPKFRLV 349
            SGERVDVMHYHYT +G F   W +A  MYE+IM++ ERINYI+V+R  RSHFLS+YY+YVQPEV+LS+QHF+G   Q    + QR RL NP+C EFGI + + L  FI  ELP FRLV
Sbjct:   89 SGERVDVMHYHYTAYGSFDGRWAEAKAMYEKIMREGERINYITVVRSQRSHFLSYYYYYVQPEVQLSVQHFFGSNRQDPQFQYQRRRLTNPLCAEFGIHNGEQLAQFIETELPDFRLV 206
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BLAST of mRNA_H-elongata_contig107202.595.1 vs. uniprot
Match: A0A6H5JL02_9PHAE (ST protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL02_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.080e-39
Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = 2 
Query:    2 SGERVDVMHYHYTDFGMFRWSWQQATVMYEQIMQDNERINYISVLRDPRSHFLSFYYFYVQPEVRLSIQHFYG--KAGQWLKKQRERLENPMCMEFGIRSEDDLDLFIAMELPKFRLV 349
            SGERVDVMHYHYT +G F   W +A  MYE+IM++ ERINYI+V+R  RSHFLS+YY+YVQPEV+LS+QHF+G  +     + QR RL NP+C EFGI + + L  FI  ELP FRLV
Sbjct:  278 SGERVDVMHYHYTTYGSFDGRWAEAKAMYEKIMREGERINYITVVRSQRSHFLSYYYYYVQPEVQLSVQHFFGSNREDPQFQYQRRRLTNPLCAEFGIHNGEQLAQFIETELPDFRLV 395
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BLAST of mRNA_H-elongata_contig107202.595.1 vs. uniprot
Match: A0A6H5JVG3_9PHAE (ST protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVG3_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 3.340e-31
Identity = 59/116 (50.86%), Postives = 81/116 (69.83%), Query Frame = 2 
Query:    2 SGERVDVMHYHYTDFGMFRWSWQQATVMYEQIMQDNERINYISVLRDPRSHFLSFYYFYVQPEVRLSIQHFYGKAGQWLKKQRERLENPMCMEFGIRSEDDLDLFIAMELPKFRLV 349
            SG+RVDVMHYH  + G++  +W+  T MY+QIMQD E INYI+V+R PR HFLS+YY+Y+QP  +LSI+ +  +     +   + + NPMC+EFG+  ED LD+FI   LP F LV
Sbjct:  167 SGQRVDVMHYHVHE-GVWEGTWEDNTNMYQQIMQDAEPINYITVVRSPREHFLSYYYYYMQPMNKLSIEQYLERTK---RHPAQHMMNPMCLEFGVHDEDQLDIFIEKHLPSFALV 278
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BLAST of mRNA_H-elongata_contig107202.595.1 vs. uniprot
Match: D7G4H5_ECTSI (Sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H5_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 5.890e-30
Identity = 56/116 (48.28%), Postives = 81/116 (69.83%), Query Frame = 2 
Query:    2 SGERVDVMHYHYTDFGMFRWSWQQATVMYEQIMQDNERINYISVLRDPRSHFLSFYYFYVQPEVRLSIQHFYGKAGQWLKKQRERLENPMCMEFGIRSEDDLDLFIAMELPKFRLV 349
            +G+RVDVMHYH  + G++  +W+  T MY+QIMQ+ E INYI+V+R PR HFLS+YY+Y+QP  +LSI+ +  +     +   + + NPMC+EFG+  +D LD+FI   LP F LV
Sbjct:   67 NGQRVDVMHYHVHE-GVWEGTWEDNTKMYKQIMQEAEPINYITVVRSPREHFLSYYYYYMQPMNKLSIEQYLERTK---RHPAQHMMNPMCVEFGVHDKDQLDIFIEKHLPSFALV 178
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BLAST of mRNA_H-elongata_contig107202.595.1 vs. uniprot
Match: A0A6H5L8E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8E6_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 8.450e-26
Identity = 52/116 (44.83%), Postives = 74/116 (63.79%), Query Frame = 2 
Query:    2 SGERVDVMHYHYTDFGMFRWSWQQATVMYEQIMQDNERINYISVLRDPRSHFLSFYYFYVQPEVRLSIQHFYGKAGQWLKKQRERLENPMCMEFGIRSEDDLDLFIAMELPKFRLV 349
            SGE VDVMHYH +  G +  +W QA   + +IM+  + INY++VLR+PRSH LS YYFY+ PE  LSI+ +         + R RL NP+  EFG+++  +++ FI   LP F+LV
Sbjct:  108 SGELVDVMHYHISHSGEYTGTWPQAENYFRRIMRHPDSINYVTVLREPRSHLLSCYYFYIFPECELSIEDYLMDPAHAGDENRHRLRNPLSAEFGVKTAKEMNTFIVNHLPDFKLV 223
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BLAST of mRNA_H-elongata_contig107202.595.1 vs. uniprot
Match: A0A6H5JIK1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIK1_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 3.980e-24
Identity = 48/116 (41.38%), Postives = 78/116 (67.24%), Query Frame = 2 
Query:    2 SGERVDVMHYHYTDFGMFRWSWQQATVMYEQIMQDNERINYISVLRDPRSHFLSFYYFYVQPEVRLSIQHFYGKAGQWLKKQRERLENPMCMEFGIRSEDDLDLFIAMELPKFRLV 349
            +G+RVD+MHYH +  G +  +W +A   Y  IM++ + IN+++VLR+PRSH LS+YY+++QP  + SI+ F   +G     +   L NP+  EFG+R+ +++D FI+  LP F+LV
Sbjct:  101 NGQRVDLMHYHISPRGQYMGTWNEAVTHYRVIMRNPDDINFVTVLREPRSHLLSYYYYFLQPLHQQSIEEFL-LSGHRNNIEHRMLSNPLSAEFGVRTAEEMDSFISSALPDFKLV 215
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BLAST of mRNA_H-elongata_contig107202.595.1 vs. uniprot
Match: D8LRU8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU8_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 7.810e-22
Identity = 43/113 (38.05%), Postives = 71/113 (62.83%), Query Frame = 2 
Query:   11 RVDVMHYHYTDFGMFRWSWQQATVMYEQIMQDNERINYISVLRDPRSHFLSFYYFYVQPEVRLSIQHFYGKAGQWLKKQRERLENPMCMEFGIRSEDDLDLFIAMELPKFRLV 349
            R D+MHYH + FG F  SW+QA   Y +I+++ + +N+++V+R+PRSH LS+YY+++QP+ + +I  F  +A         RL NP+  EFG++   DL   +   LP  ++V
Sbjct:  157 RCDIMHYHVSAFGQFEGSWRQAEQAYRRILRNTKAVNFVTVVREPRSHLLSYYYYFLQPQTQKTIGEFLTQAKHPRDPIHRRLFNPLSAEFGVKKRQDLRYVLEKALPNAKMV 269
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BLAST of mRNA_H-elongata_contig107202.595.1 vs. uniprot
Match: D7FX25_ECTSI (Sulfotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX25_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 2.020e-20
Identity = 43/115 (37.39%), Postives = 72/115 (62.61%), Query Frame = 2 
Query:    5 GERVDVMHYHYTDFGMFRWSWQQATVMYEQIMQDNERINYISVLRDPRSHFLSFYYFYVQPEVRLSIQHFYGKAGQWLKKQRERLENPMCMEFGIRSEDDLDLFIAMELPKFRLV 349
            G+RVD+MHYH+   G +  +W QAT  Y +IM +   +NY++VLR+P +H+LS+YY+++ P  ++ I  +  K        ++ L NP+  EFGI     ++ FI  ++PKF++V
Sbjct:  216 GKRVDIMHYHHAWNGFYSGTWDQATAKYAKIMSNQADVNYVTVLREPVAHYLSYYYYFLNPINKMPIDEYLLK-----NPHKKLLYNPLAAEFGIEDMAQMNHFIKKQMPKFKMV 325
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BLAST of mRNA_H-elongata_contig107202.595.1 vs. uniprot
Match: D8LK91_ECTSI (Sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK91_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.110e-20
Identity = 49/133 (36.84%), Postives = 79/133 (59.40%), Query Frame = 2 
Query:    2 SGERVDVMHYHYTDFGMFRWSWQQATVMYEQIMQDNERINYISVLRDPRSHFLSFYYFYVQPEVRLSIQHFY---GKAGQWLKK---QRER-----------LENPMCMEFGIRSEDDLDLFIAMELPKFRLV 349
            SG+ VD+MHYH+   G +   W +A   Y++IM+D  ++N ++V+R+P +H++S+YY+++QPE  LSI  ++    K G    +   QR R           L NP+C EFGIR+  +L+ FI  +L  F +V
Sbjct:   75 SGKPVDLMHYHHAWDGFYEGGWAEAKAAYKKIMRDPTKVNLVTVMREPVAHYMSYYYYFLQPETGLSIAEYFELSAKPGDPRYRGVFQRRRAGKAGWHGFKLLHNPLCAEFGIRTATELESFIRDDLQGFAMV 207
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BLAST of mRNA_H-elongata_contig107202.595.1 vs. uniprot
Match: D8LI80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI80_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.120e-16
Identity = 42/133 (31.58%), Postives = 71/133 (53.38%), Query Frame = 2 
Query:    2 SGERVDVMHYHYTDFGMFRWSWQQATVMYEQIMQD-------------------NERINYISVLRDPRSHFLSFYYFYVQPEVRLSIQHFYGKAGQWLKKQRERLENPMCMEFGIRSEDDLDLFIAMELPKFR 343
            SG RVD+ HYHY   G F  +W++A  +++ IM +                   +    +++VLRDP  H+LS++YFY +PE+++ ++ ++       + +   L NP+  EFGI +E DLD F+   L + R
Sbjct:  223 SGNRVDIFHYHYVWNGYFESTWEKARGLFKDIMAEPVAPPVAAAAAAVEPRESSSSGTKFVTVLRDPVDHWLSYFYFYYEPEMKMDVEEYFSSG----RHKNRPLNNPLAAEFGIYNERDLDEFVLNHLTELR 351
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107202.595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FI84_ECTSI2.910e-4161.02Sulfotransferase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5JL02_9PHAE1.080e-3960.17ST protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
A0A6H5JVG3_9PHAE3.340e-3150.86ST protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D7G4H5_ECTSI5.890e-3048.28Sulfotransferase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5L8E6_9PHAE8.450e-2644.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIK1_9PHAE3.980e-2441.38Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LRU8_ECTSI7.810e-2238.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FX25_ECTSI2.020e-2037.39Sulfotransferase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
D8LK91_ECTSI2.110e-2036.84Sulfotransferase n=1 Tax=Ectocarpus siliculosus Ta... [more]
D8LI80_ECTSI1.120e-1631.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107202contigH-elongata_contig107202:803..1837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue1.2e-21
Seed eggNOG ortholog2880.D7G4H5
Preferred nameGAL3ST3
KEGG rclassRC00007,RC00231
KEGG koko:K01019,ko:K09676
KEGG ReactionR04017,R05105,R10805
KEGG Pathwayko00565,ko00600,ko01100,map00565,map00600,map01100
KEGG ModuleM00067
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005975,GO:0005976,GO:0005996,GO:0006022,GO:0006029,GO:0006790,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009311,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016782,GO:0017076,GO:0019538,GO:0030166,GO:0030246,GO:0030309,GO:0030554,GO:0031224,GO:0032553,GO:0032555,GO:0032559,GO:0034645,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044425,GO:0050656,GO:0050694,GO:0050698,GO:0071704,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681
EggNOG free text desc.galactosylceramide sulfotransferase activity
EggNOG OGs2CM97@1,2QPNT@2759
EC2.8.2.11
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSulfotransferase
Ec32 orthologEc-23_003770.1
Exons2
Model size376
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107202.595.1prot_H-elongata_contig107202.595.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107202 825..1837 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929602.5233736-UTR-H-elongata_contig107202:802..8241622929602.5233736-UTR-H-elongata_contig107202:802..824Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107202 803..824 +
1691679087.2993522-UTR-H-elongata_contig107202:802..8241691679087.2993522-UTR-H-elongata_contig107202:802..824Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107202 803..824 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929602.5516717-CDS-H-elongata_contig107202:824..9981622929602.5516717-CDS-H-elongata_contig107202:824..998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107202 825..998 +
1691679087.311177-CDS-H-elongata_contig107202:824..9981691679087.311177-CDS-H-elongata_contig107202:824..998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107202 825..998 +
1622929602.568735-CDS-H-elongata_contig107202:1657..18371622929602.568735-CDS-H-elongata_contig107202:1657..1837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107202 1658..1837 +
1691679087.33394-CDS-H-elongata_contig107202:1657..18371691679087.33394-CDS-H-elongata_contig107202:1657..1837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107202 1658..1837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107202.595.1

>prot_H-elongata_contig107202.595.1 ID=prot_H-elongata_contig107202.595.1|Name=mRNA_H-elongata_contig107202.595.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
MHYHYTDFGMFRWSWQQATVMYEQIMQDNERINYISVLRDPRSHFLSFYY
FYVQPEVRLSIQHFYGKAGQWLKKQRERLENPMCMEFGIRSEDDLDLFIA
MELPKFRLVSGAATTCV*
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mRNA from alignment at H-elongata_contig107202:803..1837+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107202.595.1 ID=mRNA_H-elongata_contig107202.595.1|Name=mRNA_H-elongata_contig107202.595.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1035bp|location=Sequence derived from alignment at H-elongata_contig107202:803..1837+ (Himanthalia elongata Himel1 dioecious)
CAGCGGCGAGCGCGTGGACGTGATGCACTACCATTACACAGACTTTGGCA
TGTTCCGGTGGAGCTGGCAGCAGGCGACGGTGATGTACGAGCAGATCATG
CAGGATAACGAGCGCATCAACTACATCTCCGTCCTCCGGGACCCCCGATC
TCACTTCTTGAGCTTCTACTACTTCTACGTGCAGCCCGAAGTCCGCGTGC
GTAGGCGGCGCGAAAAATATCTTGGCATGTTTACGTTTGCACTAGCCGAT
TTTTTTTTTTTTTTTTTTTCTGGGGTTGGGGGAAGGAGGGGTGGTGGTTG
ATGTTGTCGTCATTGTTTCCTTTTCTCGTNNNNNNNNNNAGAAAAACACC
TGGGCCTGTTTCCGTTCGCCCTCGCCGATTTTTTTTTTTTTCTGTTTCGG
GGGTTGCGGGAACGAGGGGCCGTGGTTGTTGTAGTCGTCATTGTTGCCGT
TTACCGTTGCTGCTTCTATCCCTGAGTTTTTGGTCCGGTCGTTTCGTCCG
CCGGGAAGCGGGAGAGAGAGAGGGAAAAACCACCCCTCCCCCTACCATCC
CCTCTCCCCGTCGAGAGAACGCTACCGAACGTTAGTGGTTTGGTGGTTCA
AGTTATCAAATGTTACAATACTTAAAAAAAGGTTGTGGTCCAAACGAACA
AGCCCAACCCCGAACAAGCTCCCACTACTTTCGCACGCAGCTACCTTACA
AGGGTGTTTTTTCCGTCTTCTCTTACGCCCCCCCCCCCCTCCACGCGTCC
CCCCTACTGTACCCCTTCCTCTTTCCCGCTTCATATGGAATTTTGTCAAA
TGTCTCCGCCGACGGCCACCCCCGCCCCGGATCCGCGGATCCTCGCGCGC
TCCAGCTGTCCATACAACACTTTTACGGGAAAGCCGGGCAATGGCTAAAA
AAGCAGCGCGAGCGCCTGGAAAACCCCATGTGCATGGAATTCGGCATTCG
CAGCGAGGATGACCTTGATCTATTCATAGCCATGGAACTCCCGAAGTTTC
GGCTGGTGAGCGGTGCGGCGACAACTTGCGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig107202:803..1837+

>mRNA_H-elongata_contig107202.595.1 ID=mRNA_H-elongata_contig107202.595.1|Name=mRNA_H-elongata_contig107202.595.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig107202:803..1837+ (Himanthalia elongata Himel1 dioecious)
ATGCACTACCATTACACAGACTTTGGCATGTTCCGGTGGAGCTGGCAGCA
GGCGACGGTGATGTACGAGCAGATCATGCAGGATAACGAGCGCATCAACT
ACATCTCCGTCCTCCGGGACCCCCGATCTCACTTCTTGAGCTTCTACTAC
TTCTACGTGCAGCCCGAAGTCCGCATGCACTACCATTACACAGACTTTGG
CATGTTCCGGTGGAGCTGGCAGCAGGCGACGGTGATGTACGAGCAGATCA
TGCAGGATAACGAGCGCATCAACTACATCTCCGTCCTCCGGGACCCCCGA
TCTCACTTCTTGAGCTTCTACTACTTCTACGTGCAGCCCGAAGTCCGCCT
GTCCATACAACACTTTTACGGGAAAGCCGGGCAATGGCTAAAAAAGCAGC
GCGAGCGCCTGGAAAACCCCATGTGCATGGAATTCGGCATTCGCAGCGAG
GATGACCTTGATCTATTCATAGCCATGGAACTCCCGAAGTTTCGGCTGGT
GAGCGGTGCGGCGACAACTTGCGTGTGACTGTCCATACAACACTTTTACG
GGAAAGCCGGGCAATGGCTAAAAAAGCAGCGCGAGCGCCTGGAAAACCCC
ATGTGCATGGAATTCGGCATTCGCAGCGAGGATGACCTTGATCTATTCAT
AGCCATGGAACTCCCGAAGTTTCGGCTGGTGAGCGGTGCGGCGACAACTT
GCGTGTGA
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