mRNA_H-elongata_contig10715.594.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10715.594.1
Unique NamemRNA_H-elongata_contig10715.594.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10715.594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10715contigH-elongata_contig10715:134..2259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size582
Cds size558
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10715.594.1prot_H-elongata_contig10715.594.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10715 134..2235 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929602.403377-CDS-H-elongata_contig10715:133..2201622929602.403377-CDS-H-elongata_contig10715:133..220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10715 134..220 -
1691679087.2374933-CDS-H-elongata_contig10715:133..2201691679087.2374933-CDS-H-elongata_contig10715:133..220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10715 134..220 -
1622929602.4178936-CDS-H-elongata_contig10715:461..5871622929602.4178936-CDS-H-elongata_contig10715:461..587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10715 462..587 -
1691679087.247439-CDS-H-elongata_contig10715:461..5871691679087.247439-CDS-H-elongata_contig10715:461..587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10715 462..587 -
1622929602.4309096-CDS-H-elongata_contig10715:836..10041622929602.4309096-CDS-H-elongata_contig10715:836..1004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10715 837..1004 -
1691679087.2573102-CDS-H-elongata_contig10715:836..10041691679087.2573102-CDS-H-elongata_contig10715:836..1004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10715 837..1004 -
1622929602.4457145-CDS-H-elongata_contig10715:1195..12761622929602.4457145-CDS-H-elongata_contig10715:1195..1276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10715 1196..1276 -
1691679087.2741337-CDS-H-elongata_contig10715:1195..12761691679087.2741337-CDS-H-elongata_contig10715:1195..1276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10715 1196..1276 -
1622929602.4630635-CDS-H-elongata_contig10715:2139..22351622929602.4630635-CDS-H-elongata_contig10715:2139..2235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10715 2140..2235 -
1691679087.2821004-CDS-H-elongata_contig10715:2139..22351691679087.2821004-CDS-H-elongata_contig10715:2139..2235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10715 2140..2235 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929602.4767702-UTR-H-elongata_contig10715:2235..22591622929602.4767702-UTR-H-elongata_contig10715:2235..2259Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10715 2236..2259 -
1691679087.2896209-UTR-H-elongata_contig10715:2235..22591691679087.2896209-UTR-H-elongata_contig10715:2235..2259Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10715 2236..2259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10715.594.1

>prot_H-elongata_contig10715.594.1 ID=prot_H-elongata_contig10715.594.1|Name=mRNA_H-elongata_contig10715.594.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
MRATQMTENALGPEHHGVATVLKFRADMYVAQGREAEAESLYERSQIIKE
KRLGPDHLELFTRTSPPTVSVSHDRYAEAETLFLQSQILREKALGPEHLD
VSNVLNDRALSIYQQGRYDEAESFYNRSYAIREKVLGPDHLDVAQSLRNR
AVSISKQDRYTKAEPLYRRAQAIRETILGPEHMDVA
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mRNA from alignment at H-elongata_contig10715:134..2259-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10715.594.1 ID=mRNA_H-elongata_contig10715.594.1|Name=mRNA_H-elongata_contig10715.594.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2126bp|location=Sequence derived from alignment at H-elongata_contig10715:134..2259- (Himanthalia elongata Himel1 dioecious)
TATCTGCGAGCAGAGCCTTTGTACATGAGGGCTACGCAAATGACGGAAAA
TGCTCTTGGTCCTGAGCACCATGGGGTTGCTACTGTATTAAAGTTTCGGG
CAGATATGTACGTAGCACAGGTAAGAGCACTAAAATATGTTTCCGTCTCG
TTGTTACCAAGTCGCTTATTTCGACGTTGACGACGACACCTTGGAGTGGT
ACACAACGTAGGTTGCCTTTAAACATCGATGTCGGTCAACGTGGGGTGGA
AGCCGCACTGATCTCAACCCAACATATTAGACACGAGCTCGACGCTTCAC
AGACAAATGAACGAACTCAAAGATAGCGTCTACGTGGGCCCTGACGAGAA
ATATATGCTTTTGAAAAAACTAGTAATTGACGAGACATTTCACGGCGCTT
CAAGCGTTCGACGTGATAATAAAATAGTAACCTCATAACATGTCTGACGT
CCCATACAAGAGAACTTATACCAGGATGGGCAAGAAAGCGGAATAATAAT
CTTCATATAAAAATAATCTGCAATTCTACGGGAGCAATAGTGCAGAACGA
TGTACGCTCGTAAGGAAGAATGAGAGCTATTATAGTGTACGCTCGATACC
ATGCCCATGTTTACATAAACCCAGTGAAGCAATATGATACCGTACGTCAA
GAAGTGCCTATATCTTCATAAAACATAAATCTCGAACTCGGCCAAACTAT
TTTGGGACAATACATCTAGCTCGGCACCGACCTTGTCGGCTCGGGTTGCG
CACTTTACACGACCCCTGCAGGAGAAGCACGGTCAGGCCGTTCCGCTTCT
CTATTACGGTTATCATCACCACAAGTAAAAGCTATAGGGGAGAAATAATG
ATAGTAAATGCTGAGAACCAGATAAATCACTGTATTGTAATCTTATTGAG
GGTTGTATGTATGTAAAAAACCGACAGAATTGAAATTGATGCTAGGAATG
CTCAGACATTAATAATCGCTTCTTGTTGAACAGGGCCGGGAGGCTGAAGC
CGAGTCGCTCTACGAGCGATCGCAAATCATAAAAGAGAAACGTTTAGGCC
CCGACCATCTAGAGGTGGCTCAATTACTCAGCGACCGGGCCATGTCTATG
TGTAGGCAGGTGAGGGACGATGGAATGAGTATAAATCCGATCAAGGTTAG
AAAGGAAAGCGGTTGTAAGATGCTAGCCGTGAAACCTGCTATTTTTTAAT
GTGACAGAAGACGCTGCAGTTCGAATTCGAGACGGGTTGTTAAGTTAATC
GGAAGTTATTTACGCGGACATCGCCACCCACCGTTTCCGTCTCACATGAT
CGATATGCGGAGGCCGAGACTCTCTTTCTGCAGTCACAGATCCTGCGGGA
AAAGGCTCTGGGTCCCGAGCATCTGGACGTATCTAATGTGCTCAACGATA
GGGCGTTATCAATATATCAACAAGTAAGACTGATAATTGATACATGTCCG
GCAGGTTTTGAAGGCGGGCCGAAAGCTTGGAGAACACCTAGAATATACGT
TCGGAACGAGTGCTCTCAATGGGTAGTTCTAAATAAATAACATAGTGGAA
CCAACGAAATGGTTCACGACAAGCAATACCTTCCAACGGAGATGATTCAT
TCAGGACATAGTTTTGTTCCTAAAGGCCTTTAACTTTGATCTTAGCCTGA
ACCTCCGCTTCCCGATTGACAGGGCCGTTACGACGAGGCGGAGTCATTTT
ACAATCGATCATACGCCATACGTGAGAAGGTGCTAGGCCCCGACCATCTA
GACGTGGCACAGTCTCTACGAAACAGGGCGGTATCCATTTCCAAGCAGGT
GCGATTAGACCAATTCTGAGAAATGGGTAGCAGAAGCCAAAGTTACAGGG
CGGATGATACGGTGCGCCGAGCGCTGGCAGAATATGGAAAGGCAATAAAA
ACCGATGATACGTAACGTCTGGTTATACGCACCGGCCTCGAGATATGCGT
AGAACATTTCTCGGTGACGTTTCAATTTAATGCGGGTGTTTAGCAAAGGT
TCTGGATGGTGTCTTTTTCAAACATTTCGCCCTGAGCAGGACCGCTACAC
AAAAGCTGAGCCACTCTACAGGCGGGCCCAGGCTATACGCGAAACAATTC
TGGGTCCCGAGCATATGGACGTAGCA
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Coding sequence (CDS) from alignment at H-elongata_contig10715:134..2259-

>mRNA_H-elongata_contig10715.594.1 ID=mRNA_H-elongata_contig10715.594.1|Name=mRNA_H-elongata_contig10715.594.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at H-elongata_contig10715:134..2259- (Himanthalia elongata Himel1 dioecious)
ATGAGGGCTACGCAAATGACGGAAAATGCTCTTGGTCCTGAGCACCATGG
GGTTGCTACTGTATTAAAGTTTCGGGCAGATATGTACGTAGCACAGATGA
GGGCTACGCAAATGACGGAAAATGCTCTTGGTCCTGAGCACCATGGGGTT
GCTACTGTATTAAAGTTTCGGGCAGATATGTACGTAGCACAGGGCCGGGA
GGCTGAAGCCGAGTCGCTCTACGAGCGATCGCAAATCATAAAAGAGAAAC
GTTTAGGCCCCGACCATCTAGAGGGCCGGGAGGCTGAAGCCGAGTCGCTC
TACGAGCGATCGCAAATCATAAAAGAGAAACGTTTAGGCCCCGACCATCT
AGAGTTATTTACGCGGACATCGCCACCCACCGTTTCCGTCTCACATGATC
GATATGCGGAGGCCGAGACTCTCTTTCTGCAGTCACAGATCCTGCGGGAA
AAGGCTCTGGGTCCCGAGCATCTGGACGTATCTAATGTGCTCAACGATAG
GGCGTTATCAATATATCAACAATTATTTACGCGGACATCGCCACCCACCG
TTTCCGTCTCACATGATCGATATGCGGAGGCCGAGACTCTCTTTCTGCAG
TCACAGATCCTGCGGGAAAAGGCTCTGGGTCCCGAGCATCTGGACGTATC
TAATGTGCTCAACGATAGGGCGTTATCAATATATCAACAAGGCCGTTACG
ACGAGGCGGAGTCATTTTACAATCGATCATACGCCATACGTGAGAAGGTG
CTAGGCCCCGACCATCTAGACGTGGCACAGTCTCTACGAAACAGGGCGGT
ATCCATTTCCAAGCAGGGCCGTTACGACGAGGCGGAGTCATTTTACAATC
GATCATACGCCATACGTGAGAAGGTGCTAGGCCCCGACCATCTAGACGTG
GCACAGTCTCTACGAAACAGGGCGGTATCCATTTCCAAGCAGGACCGCTA
CACAAAAGCTGAGCCACTCTACAGGCGGGCCCAGGCTATACGCGAAACAA
TTCTGGGTCCCGAGCATATGGACGTAGCAGACCGCTACACAAAAGCTGAG
CCACTCTACAGGCGGGCCCAGGCTATACGCGAAACAATTCTGGGTCCCGA
GCATATGGACGTAGCA
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