mRNA_H-elongata_contig10714.592.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10714.592.1
Unique NamemRNA_H-elongata_contig10714.592.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10714.592.1 vs. uniprot
Match: D7G264_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G264_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 7.110e-15
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 2
Query:    2 IFKSLGLQSVDFLASILPTILQVTRRCEAGLRSSLLRQMQVLMRRLKRSMVPYLSDIISLVTHCWTEHMEEVIPLLKEI 238
            IF S+G +SV FL +ILPT+  V  RCEAGLRSSLL QMQ+L+R LK++M PYL  I++L   CW   ++   P  KE+
Sbjct:  931 IFASIGHRSVQFLGAILPTMFFVISRCEAGLRSSLLIQMQMLVRMLKKAMTPYLEAILTLAAQCWVTRLD---PNYKEV 1006          
BLAST of mRNA_H-elongata_contig10714.592.1 vs. uniprot
Match: A0A835YM18_9STRA (Serine/threonine-protein kinase TOR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM18_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.590e-13
Identity = 39/83 (46.99%), Postives = 56/83 (67.47%), Query Frame = 2
Query:    2 IFKSLGLQSVDFLASILPTILQVTRRCEAGLRSSLLRQMQVLMRRLKRSMVPYLSDIISLVTHCWTEHMEEVIPLLKEIAGCI 250
            IFKSLGL+ V FL  ILP +L V RRCE GLR +LL+Q+  L   +++ +  +L  I  LV   W E+ME+V+PL++E+A  +
Sbjct:  274 IFKSLGLRCVPFLEHILPNMLHVVRRCEPGLRETLLQQLGNLASIVRQHIRSFLPPIFDLVVDYWQENMEQVVPLVEEVAASV 356          
BLAST of mRNA_H-elongata_contig10714.592.1 vs. uniprot
Match: F0XZH7_AURAN (Serine/threonine-protein kinase TOR n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZH7_AURAN)

HSP 1 Score: 72.0 bits (175), Expect = 7.620e-13
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 2
Query:    2 IFKSLGLQSVDFLASILPTILQVTRRCEAGLRSSLLRQMQVLMRRLKRSMVPYLSDIISLVTHCWTEHMEEVIPLLKEIAGCI 250
            IF+SLGL+ V FL +I+P +L V R CE GLR S+L Q+  L   ++  +  +L  I  LV   W EH+E+V+PLL+EIA  +
Sbjct:  864 IFQSLGLRCVPFLGNIVPHLLDVARTCEPGLRESVLLQLAALAAIVRHHLRDWLPRIFELVVDYWAEHLEQVVPLLEEIATSV 946          
BLAST of mRNA_H-elongata_contig10714.592.1 vs. uniprot
Match: A0A7S3JTK9_9STRA (Serine/threonine-protein kinase TOR (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JTK9_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.480e-9
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 2
Query:    2 IFKSLGLQSVDFLASILPTILQVTRRCEAGLRSSLLRQMQVLMRRLKRSMVPYLSDIISLVTHCWTEHMEEVIPLLKEIAGCI 250
            IF++L   S+ FL  I+P +L   R  E GLR S+L Q+  L   ++ S+  +L  I  LV   W EH+E V+PLL+EIA  +
Sbjct:  649 IFQALDTNSIPFLNDIVPHLLDAARNGEPGLRESILLQLAALASIVRHSLRDWLPRIFDLVVDYWQEHLENVVPLLEEIATSV 731          
BLAST of mRNA_H-elongata_contig10714.592.1 vs. uniprot
Match: A0A7S3ZRC1_9STRA (Non-specific serine/threonine protein kinase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRC1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.660e-8
Identity = 30/81 (37.04%), Postives = 51/81 (62.96%), Query Frame = 2
Query:    2 IFKSLGLQSVDFLASILPTILQVTRRCEAGLRSSLLRQMQVLMRRLKRSMVPYLSDIISLVTHCWTEHMEEVIPLLKEIAG 244
            + K+LG + V FL +++P +L V R  E GLR S+L+Q+  L    +  +  Y+  I+ LV   W +H+E+V+PLL+++A 
Sbjct: 1209 VVKALGHRCVPFLGALVPHLLDVARDGEPGLRESVLQQLASLASTARYHLRDYVPRILDLVVEYWAQHLEQVVPLLEQVAS 1289          
BLAST of mRNA_H-elongata_contig10714.592.1 vs. uniprot
Match: A0A6G0W5V6_9STRA (FAT domain-containing protein (Fragment) n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W5V6_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 6.920e-7
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 2
Query:    2 IFKSLGLQSVDFLASILPTILQVTRRCEAGLRSSLLRQMQVLMRRLKRSMVPYLSDIISLVTHCWTEHMEEVIPLLKEIA 241
            IFKSL LQ V FL SI+P  L V  + E  LR SL  Q+ VL   ++  + P+  +I++L+   W  H+  ++ L++++A
Sbjct:    8 IFKSLALQCVPFLPSIMPPFLHVLDKGEPRLRHSLFVQLTVLTSIVQSHLSPFFQEIVALILRHWRAHLSPILRLIEKLA 87          
BLAST of mRNA_H-elongata_contig10714.592.1 vs. uniprot
Match: A0A6G0WIT3_9STRA (Serine/threonine-protein kinase TOR n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WIT3_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 7.050e-7
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 2
Query:    2 IFKSLGLQSVDFLASILPTILQVTRRCEAGLRSSLLRQMQVLMRRLKRSMVPYLSDIISLVTHCWTEHMEEVIPLLKEIA 241
            IFKSL LQ V FL SI+P  L V  + E  LR SL  Q+ VL   ++  + P+  +I++L+   W  H+  ++ L++++A
Sbjct:  881 IFKSLALQCVPFLPSIMPPFLHVLDKGEPRLRHSLFVQLTVLTSIVQSHLSPFFQEIVALILRHWRAHLSPILRLIEKLA 960          
BLAST of mRNA_H-elongata_contig10714.592.1 vs. uniprot
Match: A0A6G0WIQ7_9STRA (Serine/threonine-protein kinase TOR n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WIQ7_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 7.050e-7
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 2
Query:    2 IFKSLGLQSVDFLASILPTILQVTRRCEAGLRSSLLRQMQVLMRRLKRSMVPYLSDIISLVTHCWTEHMEEVIPLLKEIA 241
            IFKSL LQ V FL SI+P  L V  + E  LR SL  Q+ VL   ++  + P+  +I++L+   W  H+  ++ L++++A
Sbjct:  911 IFKSLALQCVPFLPSIMPPFLHVLDKGEPRLRHSLFVQLTVLTSIVQSHLSPFFQEIVALILRHWRAHLSPILRLIEKLA 990          
BLAST of mRNA_H-elongata_contig10714.592.1 vs. uniprot
Match: A0A3R6YXP0_9STRA (Serine/threonine-protein kinase TOR (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YXP0_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.600e-5
Identity = 28/80 (35.00%), Postives = 46/80 (57.50%), Query Frame = 2
Query:    2 IFKSLGLQSVDFLASILPTILQVTRRCEAGLRSSLLRQMQVLMRRLKRSMVPYLSDIISLVTHCWTEHMEEVIPLLKEIA 241
            IFKSL LQ V FL SI+P  L V  + E  LR SL  Q+  L   ++  + P+   +++L+   W  H+  ++ L++++A
Sbjct:  892 IFKSLSLQCVPFLPSIVPPFLHVLDKGEPRLRHSLFLQLTALTSIVQHHLSPFFPAMVTLILRHWRAHLSPILQLIEKLA 971          
BLAST of mRNA_H-elongata_contig10714.592.1 vs. uniprot
Match: A0A024TJB8_9STRA (Serine/threonine-protein kinase TOR n=11 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TJB8_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.610e-5
Identity = 28/80 (35.00%), Postives = 46/80 (57.50%), Query Frame = 2
Query:    2 IFKSLGLQSVDFLASILPTILQVTRRCEAGLRSSLLRQMQVLMRRLKRSMVPYLSDIISLVTHCWTEHMEEVIPLLKEIA 241
            IFKSL LQ V FL SI+P  L V  + E  LR SL  Q+  L   ++  + P+   +++L+   W  H+  ++ L++++A
Sbjct:  985 IFKSLSLQCVPFLPSIVPPFLHVLDKGEPRLRHSLFLQLTALTSIVQHHLSPFFPAMVTLILRHWRAHLSPILQLIEKLA 1064          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10714.592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G264_ECTSI7.110e-1553.16Non-specific serine/threonine protein kinase n=1 T... [more]
A0A835YM18_9STRA1.590e-1346.99Serine/threonine-protein kinase TOR n=1 Tax=Tribon... [more]
F0XZH7_AURAN7.620e-1345.78Serine/threonine-protein kinase TOR n=1 Tax=Aureoc... [more]
A0A7S3JTK9_9STRA3.480e-940.96Serine/threonine-protein kinase TOR (Fragment) n=1... [more]
A0A7S3ZRC1_9STRA1.660e-837.04Non-specific serine/threonine protein kinase n=2 T... [more]
A0A6G0W5V6_9STRA6.920e-737.50FAT domain-containing protein (Fragment) n=2 Tax=A... [more]
A0A6G0WIT3_9STRA7.050e-737.50Serine/threonine-protein kinase TOR n=2 Tax=Aphano... [more]
A0A6G0WIQ7_9STRA7.050e-737.50Serine/threonine-protein kinase TOR n=1 Tax=Aphano... [more]
A0A3R6YXP0_9STRA1.600e-535.00Serine/threonine-protein kinase TOR (Fragment) n=1... [more]
A0A024TJB8_9STRA1.610e-535.00Serine/threonine-protein kinase TOR n=11 Tax=Aphan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10714contigH-elongata_contig10714:3720..4810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size252
Cds size252
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10714.592.1prot_H-elongata_contig10714.592.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10714 3720..4810 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929602.1700547-CDS-H-elongata_contig10714:3719..37721622929602.1700547-CDS-H-elongata_contig10714:3719..3772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10714 3720..3772 -
1691679087.1747031-CDS-H-elongata_contig10714:3719..37721691679087.1747031-CDS-H-elongata_contig10714:3719..3772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10714 3720..3772 -
1622929602.190797-CDS-H-elongata_contig10714:3975..40991622929602.190797-CDS-H-elongata_contig10714:3975..4099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10714 3976..4099 -
1691679087.183415-CDS-H-elongata_contig10714:3975..40991691679087.183415-CDS-H-elongata_contig10714:3975..4099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10714 3976..4099 -
1622929602.2461815-CDS-H-elongata_contig10714:4735..48101622929602.2461815-CDS-H-elongata_contig10714:4735..4810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10714 4736..4810 -
1691679087.1924994-CDS-H-elongata_contig10714:4735..48101691679087.1924994-CDS-H-elongata_contig10714:4735..4810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10714 4736..4810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10714.592.1

>prot_H-elongata_contig10714.592.1 ID=prot_H-elongata_contig10714.592.1|Name=mRNA_H-elongata_contig10714.592.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
DFQEPRASERGLFSLHPPDHPSSNKAVRGGIAVELAPPDAGADAQVEAKH
GSLPFRHHFPGDSLLDGTYGGGDPFIEGDCRLHS
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mRNA from alignment at H-elongata_contig10714:3720..4810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10714.592.1 ID=mRNA_H-elongata_contig10714.592.1|Name=mRNA_H-elongata_contig10714.592.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1091bp|location=Sequence derived from alignment at H-elongata_contig10714:3720..4810- (Himanthalia elongata Himel1 dioecious)
GATTTTCAAGAGCCTCGGGCTTCAGAGCGTGGACTTTTTAGCCTCCATCC TCCCGACCATCCTTCAAGTAACAAGGTGCTATAGTGTGCTATTTCGTAAT AATGTGTTTTGTACCGAAATACTACAATAGTACTAAAATGACTGGGATAC TATACTATAATATAATATAGTGAATTATCTGCCGTGGGGATGTTTAGTAC CAGGGTATATTATACTATTAATAGCATAGTGATAGCTTATAATTATAGTA ATTATAGTAATAGTGGTAATAGTAATAGCTACCAGGTACCGGTAGTAATT ATAGAAATGATAGTAATGTGTAATCTGTAATCTGTTACATTTAGGCTAAA TCTGGCATAACGAATATAATGTACACACTCAACCTGACTGAGGATTGTTG GTCCCTTCCCTGGACTTTGCCGCAAAAACTGTAGAGAATTAATTAGGGTT AGGGTTAGGGTTGGATTTGTTGCAATAAAACATGTGCATACAGGACGCAA TACAAATACCTATTTAAAAAGTACAGTTAGTTAGTATGTGGATGTAAAGA TTACAAGAGTACAAATATATATATAAAGTCTGAACTATTAATATTACTGA TTGTATTCTCGCCAGTGAAACAATACATCGGAATCTAGGAGCGACAAATT CTCAATTTGAGATATTATAATCTTGCTTTATCCTTAAGCTGTTATGCTTT CTCTATCGCAGGCGGTGCGAGGCGGGATTGCGGTCGAGCTTGCTCCGCCA GATGCAGGTGCTGATGCGCAGGTTGAAGCGAAGCATGGTTCCCTACCTTT CCGACATCATTTCCCTGGTGACTCACTGCTGGACGGTGAGAAAAAAAAGA GGGTTAGGGTTAGTCCATAGTCCCTCTCCCCTTGTGTGCTTCTGTTTGGA TGTTTTCCATTACGGCTCATGACGGCTTTATAGGAACCCTAACCTTAACC CTAACCCTAACCTGCCTAATGATTGCTGTAAGCGGTGATGTTTCCAAACC ATGAGTTCTGTGTTGTGATTTGCTGTTCGTTTCGGCAGGAACATATGGAG GAGGTGATCCCTTTATTGAAGGAGATTGCCGGTTGCATTCC
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Coding sequence (CDS) from alignment at H-elongata_contig10714:3720..4810-

>mRNA_H-elongata_contig10714.592.1 ID=mRNA_H-elongata_contig10714.592.1|Name=mRNA_H-elongata_contig10714.592.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig10714:3720..4810- (Himanthalia elongata Himel1 dioecious)
GATTTTCAAGAGCCTCGGGCTTCAGAGCGTGGACTTTTTAGCCTCCATCC
TCCCGACCATCCTTCAAGTAACAAGGATTTTCAAGAGCCTCGGGCTTCAG
AGCGTGGACTTTTTAGCCTCCATCCTCCCGACCATCCTTCAAGTAACAAG
GCGGTGCGAGGCGGGATTGCGGTCGAGCTTGCTCCGCCAGATGCAGGTGC
TGATGCGCAGGTTGAAGCGAAGCATGGTTCCCTACCTTTCCGACATCATT
TCCCTGGTGACTCACTGCTGGACGGCGGTGCGAGGCGGGATTGCGGTCGA
GCTTGCTCCGCCAGATGCAGGTGCTGATGCGCAGGTTGAAGCGAAGCATG
GTTCCCTACCTTTCCGACATCATTTCCCTGGTGACTCACTGCTGGACGGA
ACATATGGAGGAGGTGATCCCTTTATTGAAGGAGATTGCCGGTTGCATTC
CGAACATATGGAGGAGGTGATCCCTTTATTGAAGGAGATTGCCGGTTGCA
TTCC
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