mRNA_H-elongata_contig10713.589.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10713.589.1
Unique NamemRNA_H-elongata_contig10713.589.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10713.589.1 vs. uniprot
Match: D8LU85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU85_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 5.470e-21
Identity = 46/91 (50.55%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:    1 DGVLPAAELIYTMFQECPGWARSYGRHAAHMSLAVFRLYGRREPYDALKTIIGVADNEFIPDWE--GNQHGGHICGLGCCMTLAGVLLTLK 267
            DG+LP AEL   M  +CPGW RSYGRHAAH++LAVFRL+G R  YD L  ++    ++ IP ++  G  +GGH CGLG C  L+  L  L 
Sbjct:  317 DGMLPMAELTTAMLTKCPGWGRSYGRHAAHLALAVFRLHGHRHSYDTLSDLVRKTSDDPIPSFDDSGGGYGGHACGLGACRVLSESLSALS 407
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BLAST of mRNA_H-elongata_contig10713.589.1 vs. uniprot
Match: A0A6H5KXY9_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXY9_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.820e-19
Identity = 45/88 (51.14%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:    1 DGVLPAAELIYTMFQECPGWARSYGRHAAHMSLAVFRLYGRREPYDALKTIIGVADNEFIPDWEGNQHGGHICGLGCCMTLAGVLLTL 264
            DG+LP AEL   M  +CPGW RSYGRHAAH+SLAVFRL+G R  YD L  ++    ++ IP +E +  GG  C LG C  L+  L  L
Sbjct:  459 DGMLPMAELTTAMLTKCPGWGRSYGRHAAHLSLAVFRLHGHRHSYDNLSDLVRKTSDDPIPPFEDSGGGGQACRLGACRVLSESLSAL 546
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10713.589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU85_ECTSI5.470e-2150.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXY9_9PHAE1.820e-1951.14Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10713contigH-elongata_contig10713:2970..5238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZn(2)-C6 fungal-type DNA-binding domain
Ec32 orthologEc-14_004060.1
Exons3
Model size831
Cds size831
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10713.589.1prot_H-elongata_contig10713.589.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10713 2970..5238 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929601.8378882-CDS-H-elongata_contig10713:2969..34681622929601.8378882-CDS-H-elongata_contig10713:2969..3468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10713 2970..3468 -
1691679087.0277822-CDS-H-elongata_contig10713:2969..34681691679087.0277822-CDS-H-elongata_contig10713:2969..3468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10713 2970..3468 -
1622929601.8527718-CDS-H-elongata_contig10713:3600..38671622929601.8527718-CDS-H-elongata_contig10713:3600..3867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10713 3601..3867 -
1691679087.0455825-CDS-H-elongata_contig10713:3600..38671691679087.0455825-CDS-H-elongata_contig10713:3600..3867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10713 3601..3867 -
1622929601.8636596-CDS-H-elongata_contig10713:5173..52381622929601.8636596-CDS-H-elongata_contig10713:5173..5238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10713 5174..5238 -
1691679087.0602217-CDS-H-elongata_contig10713:5173..52381691679087.0602217-CDS-H-elongata_contig10713:5173..5238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10713 5174..5238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10713.589.1

>prot_H-elongata_contig10713.589.1 ID=prot_H-elongata_contig10713.589.1|Name=mRNA_H-elongata_contig10713.589.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=277bp
DGVLPAAELIYTMFQECPGWARSYGRHAAHMSLAVFRLYGRREPYDALKT
IIGVADNEFIPDWEGNQHGGHICGLGCCMTLAGVLLTLKPSDASGQTIPT
GSSTPPPPSPPPSLTTATITTSATSVCSQVESCSPDSGQAARIISQTTSR
DSLGDVSALCAGSKRGRASLIKHQQQLFAEAVTPSPVEASGHHVVAESRR
QRAMSLLSNVAPITRLGLTEEAQVGHHRSQNSGVRIKTSPSSQLPGNERA
FAAPRSAVKTVLDADSSLKVKTAGAVS
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mRNA from alignment at H-elongata_contig10713:2970..5238-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10713.589.1 ID=mRNA_H-elongata_contig10713.589.1|Name=mRNA_H-elongata_contig10713.589.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2269bp|location=Sequence derived from alignment at H-elongata_contig10713:2970..5238- (Himanthalia elongata Himel1 dioecious)
GACGGCGTGTTGCCAGCCGCCGAGCTGATTTACACCATGTTCCAAGAATG
TCCTGGATGGGCGAGGTAAGATCGCAAGTCACCGCGCAGATGCTCTATGT
ACGTTGAAATCGCTGCCGCACAACAGTCAGTAGTAGCGGCGAATAGGGGA
GACATGTTCCGTTCTGAAAGAAATAATGAAATGTTTATCACTTGCTGTCG
AAACGAGGGGTTTTCTTGAGACTACTGGAATTCCAGCTAGAAGAATAACC
TTGTCGTTGCGAGCTTATAATAATGGGGTTGAAAACCCGGAGTGCCTCGT
GGTAACGCCGGATCAGAGTTGGTGCAGCGGCTGTTAGCAGAAAATGTCAA
CAGAATGTTGATTGGCTTCCTGTATTGAATGCGTGGGAGTGGGAAACGTT
TCAGACCAGCAGTACCTGCTCCTTGACGCAGGGAGTGGGTAAATTAGTCA
TGCTGCATGCTTCCATGGTACGAAGTTCGTCCGAGTTGTCGGCGACGGAA
GTGAAGTGATTAATGATGGTGCATGTTCGACCGCACCCCATACGCTAGCA
AAATCAACTCAGAGCTTTACGGTACGGACCCCCAGCAAGTGCTCGATCGG
CGTATCACTATGCAGCAGCGGGCTCACTCTAAAGCCTACTCAATGACCTA
TCACGTTTTCGTAGCACGAGACCTCGGATCCACACTCCCACCAATGCCAA
TCCGCCTAGTCCATTTTTGATGGGAAGCAAAAGTCGATGGCGAAATGAGG
CGAAACCAAGGCATGATGTGTACCCTGCGTATAGCGCAACCAATCCCTGA
TTATTGGTTATACCTTACGATACTATACTATACTATACTGTGTTGTATCG
CACATATCAACTGTTATACCAAGAGTGGGTTGGGGAAAATCGAGGCGAAC
AATAGCTAGTCCATGGGGTTATTATTTGAATAGGCTACACCCGTTACTCA
AGCTACCTTGAAGACTGCTGAATTACTGCCGGTGGACTCTCGGTGGTGAA
CACCATCGGTATGCAATTATGTGACATGATGAACTCGGGATTGTCCCGAT
TGCGGTTGACGATAGAGATGGACGCCGTCGCGGAAAGCGAGAGGATCAAG
AGGATCCCGGGAGTACGCACCAGATTCAGTCTGGTTTCGGAGAATGACGG
GCTGACAGGACGACCCAACCCGTCTCGCTAGACCAAATTATCAGGCGCAA
AGGGGGAAAGGGAAAAAATATGTAATTGTTCAGCTGACCACGAGCAATAT
TGGCAACCAAACGCGGTTGATCCATACTATACTGCTATATATATATATAT
AAATTAATAAATTGAACCCTCAGCGTGTTTCATTATTTACCATTCGTTTT
TACGTTTCCTCTGTCCTTCAGGTCTTACGGACGCCACGCCGCACACATGT
CGCTTGCCGTTTTTCGGCTCTACGGTCGACGGGAGCCGTATGACGCCCTT
AAGACCATCATTGGAGTAGCGGACAACGAGTTCATACCGGATTGGGAAGG
AAACCAACACGGCGGGCATATTTGCGGACTGGGGTGTTGTATGACGCTCG
CCGGAGTACTGTTGACGCTGAAGCCATCCGACGCGAGTGGTCAGACCATT
CCCACCGGTAGCAGCACCCCCCCCCCCCCCTCCCCCCCTACCCCCACCAT
CACCACCCCCCCAACCAGCCGTTTCCGGCCAGGCGGAAACTTTAATCCNN
NNNNNNNNCCCCGCAACCACCCCGCCCGAGTGGGCCGACCCATCCCAACG
GTAACCGCCCCCCCCCCCCCCCCTTCCCTCACTACCGCCACCATCACTAC
CTCCGCAACGAGCGTTTGCAGTCAAGTCGAAAGCTGTAGTCCTGACAGCG
GTCAGGCCGCCAGAATAATCAGCCAAACCACAAGCAGGGATAGCCTCGGG
GACGTCAGTGCCCTCTGCGCAGGGTCCAAACGCGGTAGGGCATCGTTGAT
AAAACACCAGCAGCAGCTGTTTGCCGAGGCGGTGACGCCGAGTCCGGTGG
AGGCTTCGGGACATCACGTTGTCGCTGAATCTCGGCGGCAGCGTGCGATG
TCCCTCCTGAGTAATGTCGCCCCCATTACTAGACTGGGGCTTACCGAAGA
GGCCCAAGTAGGTCATCACCGTTCCCAAAATTCCGGCGTTAGGATAAAAA
CCTCACCATCATCTCAACTCCCAGGAAATGAAAGAGCATTTGCGGCTCCA
CGGTCAGCCGTGAAAACGGTACTGGACGCAGATTCATCGTTAAAAGTAAA
GACGGCGGGCGCAGTCTCC
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Coding sequence (CDS) from alignment at H-elongata_contig10713:2970..5238-

>mRNA_H-elongata_contig10713.589.1 ID=mRNA_H-elongata_contig10713.589.1|Name=mRNA_H-elongata_contig10713.589.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1662bp|location=Sequence derived from alignment at H-elongata_contig10713:2970..5238- (Himanthalia elongata Himel1 dioecious)
GACGGCGTGTTGCCAGCCGCCGAGCTGATTTACACCATGTTCCAAGAATG
TCCTGGATGGGCGAGGACGGCGTGTTGCCAGCCGCCGAGCTGATTTACAC
CATGTTCCAAGAATGTCCTGGATGGGCGAGGTCTTACGGACGCCACGCCG
CACACATGTCGCTTGCCGTTTTTCGGCTCTACGGTCGACGGGAGCCGTAT
GACGCCCTTAAGACCATCATTGGAGTAGCGGACAACGAGTTCATACCGGA
TTGGGAAGGAAACCAACACGGCGGGCATATTTGCGGACTGGGGTGTTGTA
TGACGCTCGCCGGAGTACTGTTGACGCTGAAGCCATCCGACGCGAGTGGT
CAGACCATTCCCACCGGTAGCAGCACCCCCCCCCCCCCCTCCCCCCCGTC
TTACGGACGCCACGCCGCACACATGTCGCTTGCCGTTTTTCGGCTCTACG
GTCGACGGGAGCCGTATGACGCCCTTAAGACCATCATTGGAGTAGCGGAC
AACGAGTTCATACCGGATTGGGAAGGAAACCAACACGGCGGGCATATTTG
CGGACTGGGGTGTTGTATGACGCTCGCCGGAGTACTGTTGACGCTGAAGC
CATCCGACGCGAGTGGTCAGACCATTCCCACCGGTAGCAGCACCCCCCCC
CCCCCCTCCCCCCCCCCTTCCCTCACTACCGCCACCATCACTACCTCCGC
AACGAGCGTTTGCAGTCAAGTCGAAAGCTGTAGTCCTGACAGCGGTCAGG
CCGCCAGAATAATCAGCCAAACCACAAGCAGGGATAGCCTCGGGGACGTC
AGTGCCCTCTGCGCAGGGTCCAAACGCGGTAGGGCATCGTTGATAAAACA
CCAGCAGCAGCTGTTTGCCGAGGCGGTGACGCCGAGTCCGGTGGAGGCTT
CGGGACATCACGTTGTCGCTGAATCTCGGCGGCAGCGTGCGATGTCCCTC
CTGAGTAATGTCGCCCCCATTACTAGACTGGGGCTTACCGAAGAGGCCCA
AGTAGGTCATCACCGTTCCCAAAATTCCGGCGTTAGGATAAAAACCTCAC
CATCATCTCAACTCCCAGGAAATGAAAGAGCATTTGCGGCTCCACGGTCA
GCCGTGAAAACGGTACTGGACGCAGATTCATCGTTAAAAGTAAAGACGGC
GGGCGCAGTCTCCCCCTTCCCTCACTACCGCCACCATCACTACCTCCGCA
ACGAGCGTTTGCAGTCAAGTCGAAAGCTGTAGTCCTGACAGCGGTCAGGC
CGCCAGAATAATCAGCCAAACCACAAGCAGGGATAGCCTCGGGGACGTCA
GTGCCCTCTGCGCAGGGTCCAAACGCGGTAGGGCATCGTTGATAAAACAC
CAGCAGCAGCTGTTTGCCGAGGCGGTGACGCCGAGTCCGGTGGAGGCTTC
GGGACATCACGTTGTCGCTGAATCTCGGCGGCAGCGTGCGATGTCCCTCC
TGAGTAATGTCGCCCCCATTACTAGACTGGGGCTTACCGAAGAGGCCCAA
GTAGGTCATCACCGTTCCCAAAATTCCGGCGTTAGGATAAAAACCTCACC
ATCATCTCAACTCCCAGGAAATGAAAGAGCATTTGCGGCTCCACGGTCAG
CCGTGAAAACGGTACTGGACGCAGATTCATCGTTAAAAGTAAAGACGGCG
GGCGCAGTCTCC
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