mRNA_H-elongata_contig107115.587.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107115.587.1
Unique NamemRNA_H-elongata_contig107115.587.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Match: D7G845_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G845_ECTSI)

HSP 1 Score: 385 bits (989), Expect = 5.000e-125
Identity = 206/249 (82.73%), Postives = 219/249 (87.95%), Query Frame = 1
Query:    1 QVMLTYFRVLKRRPPPPALFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLLTHKE----LPLEAALYCVLAAFRALQGPGRELQTDEAAFVGALYRRLPDLLRRDIGDPTGRKTTACVVLVNDCLDAALGKRRELSTARVAAMIKRLLS-------SANPAWGAGAGGLLRGAHRLILRYPAAQQLLENELDRPGAGPFRPDIPNPEHANALSSAAWELSLLRHSSEPAVAAVATDVVAVGLQDGAVALA 714
            +VMLTYFRVLKRRPPPPALFP VMEGLAKFVHLVNLDTV+DLLDLLKDLLT +E    LPLEAAL+CVLAAFRALQGPGRELQTDEAAFV ALYRRLPDLLR + GD +GRKT  CV LV DCLDAALGKRRELSTARVAAMIKRLLS       SANPAWG GAGGLLRGAHRL+LRYPAAQQLLENE DRPG+GPFRPD+ NPEHANALSSAAWELSLLR+S EPA+AAVA D+VA+G QD A  LA
Sbjct:  587 EVMLTYFRVLKRRPPPPALFPAVMEGLAKFVHLVNLDTVQDLLDLLKDLLTEEEGEEELPLEAALHCVLAAFRALQGPGRELQTDEAAFVSALYRRLPDLLRPENGDASGRKTVLCVALVYDCLDAALGKRRELSTARVAAMIKRLLSISLQLTQSANPAWGLGAGGLLRGAHRLLLRYPAAQQLLENEQDRPGSGPFRPDLTNPEHANALSSAAWELSLLRNSCEPAIAAVAADIVALGSQDAASGLA 835          
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Match: A0A835YYK4_9STRA (CBF/Mak21 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYK4_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.150e-52
Identity = 118/225 (52.44%), Postives = 142/225 (63.11%), Query Frame = 1
Query:    1 QVMLTYFRVLKRRPPPPALFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLLTHKELPLEAALYCVLAAFRALQGPGRELQTDEAAFVGALYRRLPDLLRRDIGDPTGRKTTACVVLVNDCLDAALGKRRELSTARVAAMIKRLLSSANPAWGAGAGGLLRGAHRLILRYPAAQQLLENELDRPGAGPFRPDIPNPEHANALSSAAWELSLLRHSSEPAVAAVATDV 675
            +V L YFRVLK     PAL P VMEGLAKF HL+NLDTVEDLL LLK LL  ++L  EA+L+CVL AFR LQGPGRELQ D+  FV  LY  LP L      D   R   A V L  +C+D  L KRRE S ARVAA +KR+L  A       A  L+  AH L LRY  A+Q+LENE DR  AG +   + +P+HAN  +++ WELSLL+ S    VA  A+D+
Sbjct:  674 EVTLMYFRVLKNHR-HPALLPAVMEGLAKFAHLINLDTVEDLLALLKGLLREEKLTFEASLHCVLMAFRTLQGPGRELQVDDKEFVVRLYALLPRL-----SDAANR---AYVTLATECVDTVLVKRREHSPARVAAFLKRILGLALHFPSGEAKALIGVAHALALRYGPARQMLENEQDRAAAGAYSALVEDPDHANPFATSCWELSLLKFSYHADVAKAASDM 889          
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Match: A0A1E7EU90_9STRA (NOC3p-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EU90_9STRA)

HSP 1 Score: 166 bits (421), Expect = 3.060e-44
Identity = 102/220 (46.36%), Postives = 141/220 (64.09%), Query Frame = 1
Query:    4 VMLTYFRVLKRRPPPP--ALFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLLTH-KELPLEAALYCVLAAFRALQGPGRELQTDEAAFVGALYRRLPDLLRRDIGDPTGRKTTACVVLVNDCLDAALGKRRELSTARVAAMIKRLLSSANPAWGAGAGGLLRGAHRLILRYPAAQQLLENELDRPGAGPFRPDIPNPEHANALSSAAWELSLLRHSSEPAV 654
            V+LTYFR+LK         L PV +EGLAKF HL+N+DTV DLLD+LK+LL    +LPLEA+L CVL AF+ L+GPGRE+Q D+  ++  LY +L     R   + + RK T    L+  CL AA  KRRE ST RVAA +K+  + A  A    +  L+  A +++ RYP+A QLLE+E D   +G + PD+ +PEH+N  S++AWEL++L+    P V
Sbjct:  359 VILTYFRILKSTDTKTRHGLLPVALEGLAKFSHLINIDTVVDLLDVLKELLVEVDDLPLEASLNCVLTAFQTLEGPGREMQIDQKEYITPLYSQLA----RVGSEGSSRKITE---LLLRCLTAAFIKRREYSTVRVAAFLKQTFTVAMHAPVYTSVPLIALARQILQRYPSAHQLLESESDVITSGQYTPDVDDPEHSNPFSTSAWELAVLKFHFHPQV 571          
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Match: A0A7S4K774_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K774_9STRA)

HSP 1 Score: 165 bits (417), Expect = 7.300e-44
Identity = 103/233 (44.21%), Postives = 141/233 (60.52%), Query Frame = 1
Query:    4 VMLTYFRVLKRRPPPPA----LFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLLTHK-ELPLEAALYCVLAAFRALQGPGRELQTDEAAFVGALYRRLPDLLRRDIGDPTGRKTTACVVLVNDCLDAALGKRRELSTARVAAMIKRLLSSANPAWGAGAGGLLRGAHRLILRYPAAQQLLENELDRPGAGPFRPDIPNPEHANALSSAAWELSLLRHSSEPAVAAVATDVVAVG 687
            V LTYFRVLK           L P  +EGLAKF HL+N+DTVEDLLD+L+ +L     LPL+AAL CVL AF+ L+GPGRE+Q D   +V  LY ++P L     G  +G + T    L   C+ +A  +R+E S+ RVAA +KRL S+A  A    +  +L    +L+ RYP++Q+LLENE D   +G + PD  +PEH+N  +++ WEL+LLR  +   V A   D  A G
Sbjct:  313 VTLTYFRVLKADGLSDGRAAELLPPALEGLAKFAHLINMDTVEDLLDVLRAMLKRAGSLPLDAALNCVLTAFQTLEGPGREMQIDPKEYVLPLYAQIPRL-----GSESGARHTD---LALRCMTSAFLRRKEYSSVRVAAFVKRLSSAALHAPPPASAAMLCFVRQLLARYPSSQRLLENEQDIVASGAYAPDAEDPEHSNPYAASVWELALLRFRAHAPVVAEQADGAAAG 537          
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Match: A0A7S4ABC0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ABC0_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.050e-42
Identity = 96/220 (43.64%), Postives = 139/220 (63.18%), Query Frame = 1
Query:    4 VMLTYFRVLKRRPPPPA--LFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLLTHKE-LPLEAALYCVLAAFRALQGPGRELQTDEAAFVGALYRRLPDLLRRDIGDPTGRKTTACVVLVNDCLDAALGKRRELSTARVAAMIKRLLSSANPAWGAGAGGLLRGAHRLILRYPAAQQLLENELDRPGAGPFRPDIPNPEHANALSSAAWELSLLRHSSEPAV 654
            V+LTYFR+L+         + P  +EGLAKF HL+N+DTV DLLD+LK+LL   + LPLEA+L CVL AF+ L+GPGRE+Q D+  ++  LY +L       +G     K    ++L+  CL+AA  KRRE ST RVAA +K++ + A  +    +  L+  A +++ RYP+  QLLE+E D   +G + PD+ +PEH+N  S++AWELS L+    P V
Sbjct:  349 VILTYFRILRSTDSKTRHDILPAALEGLAKFSHLINIDTVVDLLDVLKELLVIVDTLPLEASLNCVLTAFQTLEGPGREMQIDQKEYIAPLYSQLAR-----VGTEENSKKNTRILLL--CLNAAFIKRREYSTVRVAAFVKQMFTVAMHSPVYTSVPLIALARQILQRYPSVHQLLESESDVITSGTYTPDVADPEHSNPFSTSAWELSCLKFHVHPQV 561          
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Match: A0A7S2EKH4_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EKH4_TRICV)

HSP 1 Score: 153 bits (386), Expect = 1.530e-42
Identity = 96/213 (45.07%), Postives = 126/213 (59.15%), Query Frame = 1
Query:    4 VMLTYFRVLKRRPPPPA----LFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLLTHKE-LPLEAALYCVLAAFRALQGPGRELQTDEAAFVGALYRRLPDLLRRDIGDPTGRKTTACVVLVNDCLDAALGKRRELSTARVAAMIKRLLSSANPAWGAGAGGLLRGAHRLILRYPAAQQLLENELDRPGAGPFRPDIPNPEHANALSSAAWELSL 627
            V LTYFRVLK      +    L P  +EGLAKF HL+N+DTV DLLD+LK +L   + LP +AAL CVL AF+ L+GPGRE+Q D+  ++  LY +LP L+  D     G        L   CL AA  +RRE S  RVAA ++RL S A  A    +  +L    +L+ RYP   +LLENE D   +G + P+  +PE  NA + +AWELSL
Sbjct:   26 VTLTYFRVLKSDDMTDSKVAELLPPALEGLAKFAHLINMDTVVDLLDVLKKMLKRVDALPTDAALNCVLTAFQTLEGPGREMQIDQKEYLLPLYNQLPRLVANDSCRDVG--------LALRCLSAAFLRRREYSDVRVAAFVRRLSSVALHAPPESSAPILAFVRQLLHRYPGISRLLENEQDVVASGRYLPESNDPERCNAFAGSAWELSL 230          
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Match: A0A448ZJX8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJX8_9STRA)

HSP 1 Score: 161 bits (408), Expect = 1.970e-42
Identity = 98/220 (44.55%), Postives = 137/220 (62.27%), Query Frame = 1
Query:    4 VMLTYFRVLKRRPPPPA--LFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLLTHKE-LPLEAALYCVLAAFRALQGPGRELQTDEAAFVGALYRRLPDLLRRDIGDPTGRKTTACVVLVNDCLDAALGKRRELSTARVAAMIKRLLSSANPAWGAGAGGLLRGAHRLILRYPAAQQLLENELDRPGAGPFRPDIPNPEHANALSSAAWELSLLRHSSEPAV 654
            V+LTYFRVLK         L P  +EGLAKF HLVN+DTV DLLD+LK+LL   + LPLEA+L CVL AF+ L+GPGRE+Q D+  ++  LY +L       +G     K    ++L   CL AA  KRRE S  RVAA +K++ + A  +    +  L+  A +++ RYP+  QLLE+E D   +G ++PD+ +PEH+N  S++AWEL+ L+    P V
Sbjct:  349 VILTYFRVLKSTDSKTRHDLLPAALEGLAKFSHLVNIDTVVDLLDVLKELLLIVDNLPLEASLNCVLTAFQTLEGPGREMQIDQKEYIAPLYSQLAR-----VGTEENSKKNTYILL--RCLTAAFIKRREYSIVRVAAFVKQMFTVAMHSPDYTSVPLIALARQILQRYPSVHQLLESESDVITSGTYKPDVADPEHSNPFSTSAWELACLKFHVHPQV 561          
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Match: B7FS96_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FS96_PHATC)

HSP 1 Score: 161 bits (407), Expect = 3.860e-42
Identity = 99/215 (46.05%), Postives = 134/215 (62.33%), Query Frame = 1
Query:    4 VMLTYFRVLKRRPPPPA----LFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLLTHKE-LPLEAALYCVLAAFRALQGPGRELQTDEAAFVGALYRRLPDLLRRDIGDPTGRKTTACVVLVNDCLDAALGKRRELSTARVAAMIKRLLSSANPAWGAGAGGLLRGAHRLILRYPAAQQLLENELDRPGAGPFRPDIPNPEHANALSSAAWELSLLR 633
            V LTYFR+LK      A    L P  +EGLAKF HL+N+DTV DLL +LKDLL     LPLEAAL C+L AF+ LQGPG+E+  D   ++  LY +LP L    +GD   R+    V+L   CL+AA  KRRE ST RV+A  K++L+ +       A  L+    +L+ RYP   Q+LENE D   +G + PD+ +PEH+N L+++AWEL+L +
Sbjct:  378 VTLTYFRILKHDNLQAAHVETLLPAALEGLAKFAHLINIDTVMDLLGVLKDLLKKMNALPLEAALNCILTAFQTLQGPGKEMNIDVKEYIVPLYTQLPRL----VGDVNCRRHLPTVLL---CLNAAFIKRREYSTIRVSAFWKQILTVSLHVPPHTAVPLIAFGRQLLQRYPVTHQMLENEQDVITSGEYTPDVEDPEHSNPLATSAWELALAK 585          
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Match: A0A7S2PRS0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PRS0_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.610e-41
Identity = 101/221 (45.70%), Postives = 132/221 (59.73%), Query Frame = 1
Query:    4 VMLTYFRVLKRRPPPPA---LFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLL-THKELPLEAALYCVLAAFRALQGPGRELQTDEAAFVGALYRRLPDLLRRDIGDPTGRKTTACVVLVNDCLDAALGKRRELSTARVAAMIKRLLSSANPAWGAGAGGLLRGAHRLILRYPAAQQLLENELDRPGAGPFRPDIPNPEHANALSSAAWELSLLRHSSEPAV 654
            + LTYFR+LK          L PV +EGLAKF HL+N+DTVEDLL+ LK LL T  ELPL+A+L C+L +F  LQGPGREL+ D+  +V  LY +L     R     T + T     LV  CL+ A  KRRE S  RVAA IK+LL+ A  A    +  ++  A  L  RY    QLLENELD   +G + P   +P+++N  ++AAWELS L+   +P V
Sbjct:  142 ITLTYFRILKSHGAGKNALHLLPVALEGLAKFSHLINIDTVEDLLEHLKGLLATVDELPLDASLNCILTSFSTLQGPGRELKIDQKEYVAPLYSQLS----RICSSSTIQHTN----LVLRCLNLAFLKRREFSNTRVAAFIKKLLTVAVHAPPYCSASMIAFARLLFHRYQGTHQLLENELDVVSSGKYSPFTEDPDYSNPFAAAAWELSALKFHIQPVV 354          
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Match: A0A7S2YSV4_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YSV4_9STRA)

HSP 1 Score: 155 bits (391), Expect = 4.880e-41
Identity = 94/213 (44.13%), Postives = 136/213 (63.85%), Query Frame = 1
Query:    4 VMLTYFRVLK--RRPPPPALFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLLTHKEL-PLEAALYCVLAAFRALQGPGRELQTDEAAFVGALYRRLPDLLRRDIGDPTGRKTTACVVLVNDCLDAALGKRRELSTARVAAMIKRLLSSANPAWGAGAGGLLRGAHRLILRYPAAQQLLENELDRPGAGPFRPDIPNPEHANALSSAAWELSLLR 633
            V LTYFR+LK         + PV + GLAKF HL+N+DTV+DLL +LKDLL + +L PL+AAL C+L AF+ LQGPG+EL+ D+  +V  LY ++  +  ++       K T  ++    CL AA  K++E S  RVAA +K++LS+A  +    A  LL    +++ RYP+AQQLLENE D   +G + PD+ +PE +N  +++ WELS LR
Sbjct:  149 VTLTYFRILKSDNLQAMEDVLPVALAGLAKFAHLINIDTVKDLLAVLKDLLKNVDLLPLDAALNCILTAFQTLQGPGQELKIDQKEYVVPLYSQIARITTKE----NSLKHTEILL---KCLSAAFLKQKEFSNVRVAAFVKQILSAAIHSPSYTAVPLLAFVRQMMQRYPSAQQLLENENDVITSGEYTPDVIDPEQSNPFATSGWELSTLR 354          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G845_ECTSI5.000e-12582.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YYK4_9STRA1.150e-5252.44CBF/Mak21 family-domain-containing protein n=1 Tax... [more]
A0A1E7EU90_9STRA3.060e-4446.36NOC3p-domain-containing protein n=1 Tax=Fragilario... [more]
A0A7S4K774_9STRA7.300e-4444.21Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4ABC0_9STRA1.050e-4243.64Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S2EKH4_TRICV1.530e-4245.07Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A448ZJX8_9STRA1.970e-4244.55Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B7FS96_PHATC3.860e-4246.05Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2PRS0_9STRA1.610e-4145.70Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2YSV4_9STRA4.880e-4144.13Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107115contigH-elongata_contig107115:169..1429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score383.6
Seed ortholog evalue6.4e-104
Seed eggNOG ortholog2880.D7G845
KEGG koko:K14834
GOsGO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005730,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006267,GO:0006270,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022402,GO:0022607,GO:0022613,GO:0030684,GO:0030687,GO:0030689,GO:0030691,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033260,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0036387,GO:0036388,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044786,GO:0046483,GO:0065003,GO:0065004,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:1901360,GO:1901576,GO:1902299,GO:1990904
EggNOG free text desc.chromatin binding
EggNOG OGsCOG5117@1,KOG2153@2759
COG Functional cat.JU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons3
Model size714
Cds size708
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107115.587.1prot_H-elongata_contig107115.587.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107115 175..1429 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929601.6773555-UTR-H-elongata_contig107115:168..1741622929601.6773555-UTR-H-elongata_contig107115:168..174Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107115 169..174 +
1691679086.959081-UTR-H-elongata_contig107115:168..1741691679086.959081-UTR-H-elongata_contig107115:168..174Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107115 169..174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929601.6932068-CDS-H-elongata_contig107115:174..3241622929601.6932068-CDS-H-elongata_contig107115:174..324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107115 175..324 +
1691679086.9718885-CDS-H-elongata_contig107115:174..3241691679086.9718885-CDS-H-elongata_contig107115:174..324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107115 175..324 +
1622929601.7091413-CDS-H-elongata_contig107115:603..8791622929601.7091413-CDS-H-elongata_contig107115:603..879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107115 604..879 +
1691679086.9817994-CDS-H-elongata_contig107115:603..8791691679086.9817994-CDS-H-elongata_contig107115:603..879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107115 604..879 +
1622929601.724948-CDS-H-elongata_contig107115:1147..14291622929601.724948-CDS-H-elongata_contig107115:1147..1429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107115 1148..1429 +
1691679086.991786-CDS-H-elongata_contig107115:1147..14291691679086.991786-CDS-H-elongata_contig107115:1147..1429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107115 1148..1429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107115.587.1

>prot_H-elongata_contig107115.587.1 ID=prot_H-elongata_contig107115.587.1|Name=mRNA_H-elongata_contig107115.587.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=236bp
MLTYFRVLKRRPPPPALFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLLTH
KELPLEAALYCVLAAFRALQGPGRELQTDEAAFVGALYRRLPDLLRRDIG
DPTGRKTTACVVLVNDCLDAALGKRRELSTARVAAMIKRLLSSANPAWGA
GAGGLLRGAHRLILRYPAAQQLLENELDRPGAGPFRPDIPNPEHANALSS
AAWELSLLRHSSEPAVAAVATDVVAVGLQDGAVALA
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mRNA from alignment at H-elongata_contig107115:169..1429+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107115.587.1 ID=mRNA_H-elongata_contig107115.587.1|Name=mRNA_H-elongata_contig107115.587.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1261bp|location=Sequence derived from alignment at H-elongata_contig107115:169..1429+ (Himanthalia elongata Himel1 dioecious)
CAGGTGATGCTTACCTATTTTCGAGTTCTCAAGCGCCGCCCGCCGCCCCC CGCCCTCTTCCCGGTGGTGATGGAGGGCTTGGCCAAGTTTGTGCATCTCG TGAATCTCGACACCGTCGAGGATCTTTTGGATCTTCTAAAAGATCTCCTC ACACATGTGAGATCAAAGCTATATTTGAGTTGACACGGCGTAGTTCTCCT TCTCGGTCGCGGCAGGTTGGATACCTTGGGTACCTTAAAGGTTATTTTGC CTTTGCCTTGAGTAACGTGCTCGTGCAGCCGAAGAGCTTCATGTTGATCT CATTGACGGTGGTCATTGACTGAAGCTTTTCAGAGACACGTTGTGAGAGT ATCATCGAAACGTTTACCTCGCCTTTCGCGCCTTGACTTTTTCTACGCCT TGACAATATGTATACCACAAAAGGAGGAAGGTGAGAAAGAACTCCCGCTC GAGGCTGCCCTGTACTGTGTTCTGGCTGCATTCCGAGCCCTCCAAGGTCC CGGCCGTGAGCTCCAGACCGACGAGGCAGCGTTTGTGGGTGCGCTCTATC GCCGACTCCCCGATCTCTTGCGAAGAGATATTGGTGACCCAACAGGGAGG AAAACAACTGCGTGCGTTGTGCTGGTGAACGACTGCCTGGACGCGGCGTT AGGAAAACGGCGGGAGCTGTCCACCGCACGTGTCGCGGCGATGATTAAGC GATTGCTCTCGGTGTCTTTACAGCTCCCACAGGTGAGTCGGTACCCCTCG CCAAATTCTTGTACTGGTGAGGAGGCCAGAGTCGGTGTGAAGGGCGCTTT GACTCAGGGTGAAATAGCGTTCTACTCTTCTGGAGCTCAAGCACCCTTAT ATTAGATGCTACAAAGTGCCGACTATCGTGCGTTTTACTCACACTCAGTA GACTGCGGTACTTTTGCGTGTGTCTGAGGTTGGCTCCCCCCACAACATTT ATTGCGCCTTCTTTGTCACGTATTCTCAGTCAGCCAACCCGGCATGGGGT GCTGGTGCCGGTGGCCTCCTCCGTGGAGCGCACCGCCTTATCCTACGATA TCCAGCCGCGCAACAGCTTCTGGAGAACGAGCTAGACAGACCGGGCGCGG GGCCGTTCCGACCGGACATCCCCAACCCTGAACACGCCAATGCACTATCA TCCGCGGCGTGGGAGCTGTCGTTGTTGCGCCATAGCTCTGAGCCCGCGGT TGCCGCTGTCGCCACTGATGTAGTGGCTGTCGGTTTACAGGACGGTGCCG TTGCCTTAGCG
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Coding sequence (CDS) from alignment at H-elongata_contig107115:169..1429+

>mRNA_H-elongata_contig107115.587.1 ID=mRNA_H-elongata_contig107115.587.1|Name=mRNA_H-elongata_contig107115.587.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1416bp|location=Sequence derived from alignment at H-elongata_contig107115:169..1429+ (Himanthalia elongata Himel1 dioecious)
ATGCTTACCTATTTTCGAGTTCTCAAGCGCCGCCCGCCGCCCCCCGCCCT
CTTCCCGGTGGTGATGGAGGGCTTGGCCAAGTTTGTGCATCTCGTGAATC
TCGACACCGTCGAGGATCTTTTGGATCTTCTAAAAGATCTCCTCACACAT
ATGCTTACCTATTTTCGAGTTCTCAAGCGCCGCCCGCCGCCCCCCGCCCT
CTTCCCGGTGGTGATGGAGGGCTTGGCCAAGTTTGTGCATCTCGTGAATC
TCGACACCGTCGAGGATCTTTTGGATCTTCTAAAAGATCTCCTCACACAT
AAAGAACTCCCGCTCGAGGCTGCCCTGTACTGTGTTCTGGCTGCATTCCG
AGCCCTCCAAGGTCCCGGCCGTGAGCTCCAGACCGACGAGGCAGCGTTTG
TGGGTGCGCTCTATCGCCGACTCCCCGATCTCTTGCGAAGAGATATTGGT
GACCCAACAGGGAGGAAAACAACTGCGTGCGTTGTGCTGGTGAACGACTG
CCTGGACGCGGCGTTAGGAAAACGGCGGGAGCTGTCCACCGCACGTGTCG
CGGCGATGATTAAGCGATTGCTCTCGAAAGAACTCCCGCTCGAGGCTGCC
CTGTACTGTGTTCTGGCTGCATTCCGAGCCCTCCAAGGTCCCGGCCGTGA
GCTCCAGACCGACGAGGCAGCGTTTGTGGGTGCGCTCTATCGCCGACTCC
CCGATCTCTTGCGAAGAGATATTGGTGACCCAACAGGGAGGAAAACAACT
GCGTGCGTTGTGCTGGTGAACGACTGCCTGGACGCGGCGTTAGGAAAACG
GCGGGAGCTGTCCACCGCACGTGTCGCGGCGATGATTAAGCGATTGCTCT
CGTCAGCCAACCCGGCATGGGGTGCTGGTGCCGGTGGCCTCCTCCGTGGA
GCGCACCGCCTTATCCTACGATATCCAGCCGCGCAACAGCTTCTGGAGAA
CGAGCTAGACAGACCGGGCGCGGGGCCGTTCCGACCGGACATCCCCAACC
CTGAACACGCCAATGCACTATCATCCGCGGCGTGGGAGCTGTCGTTGTTG
CGCCATAGCTCTGAGCCCGCGGTTGCCGCTGTCGCCACTGATGTAGTGGC
TGTCGGTTTACAGGACGGTGCCGTTGCCTTAGCGTCAGCCAACCCGGCAT
GGGGTGCTGGTGCCGGTGGCCTCCTCCGTGGAGCGCACCGCCTTATCCTA
CGATATCCAGCCGCGCAACAGCTTCTGGAGAACGAGCTAGACAGACCGGG
CGCGGGGCCGTTCCGACCGGACATCCCCAACCCTGAACACGCCAATGCAC
TATCATCCGCGGCGTGGGAGCTGTCGTTGTTGCGCCATAGCTCTGAGCCC
GCGGTTGCCGCTGTCGCCACTGATGTAGTGGCTGTCGGTTTACAGGACGG
TGCCGTTGCCTTAGCG
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