mRNA_H-elongata_contig106974.574.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106974.574.1
Unique NamemRNA_H-elongata_contig106974.574.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig106974.574.1 vs. uniprot
Match: D8LGF8_ECTSI (OSJNBa0029H02.30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF8_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 5.810e-21
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 IPMQNLTAPGDWNRQHTPLKHFNWSEGCFNFHFIDKETTDGGPS 132
            IPMQNLTAPGDWNRQ++ LKHFNWSEGCFNFHFID++TTDGG S
Sbjct:   46 IPMQNLTAPGDWNRQNSALKHFNWSEGCFNFHFIDQDTTDGGLS 89
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BLAST of mRNA_H-elongata_contig106974.574.1 vs. uniprot
Match: A0A6H5J9H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H9_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.830e-20
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 IPMQNLTAPGDWNRQHTPLKHFNWSEGCFNFHFIDKETTDGGPS 132
            IPMQNLTAPGDWNRQ+  LKHFNWSEGCFNFHFID++TTDGG S
Sbjct:   46 IPMQNLTAPGDWNRQNGALKHFNWSEGCFNFHFIDQDTTDGGLS 89
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BLAST of mRNA_H-elongata_contig106974.574.1 vs. uniprot
Match: A0A835ZHG4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHG4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.070e-14
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 IPMQNLTAPGDWNRQHTPLKHFNWSEGCFNFHFIDKETTDGGPS 132
            +PMQ+LTAPGDW RQ+ P +HF+W+EG F+FHF++  TTDGG S
Sbjct:   44 VPMQDLTAPGDWTRQNCPFRHFSWTEGAFHFHFVEDGTTDGGLS 87
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BLAST of mRNA_H-elongata_contig106974.574.1 vs. uniprot
Match: A0A1E7FVA1_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVA1_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.870e-5
Identity = 21/45 (46.67%), Postives = 24/45 (53.33%), Query Frame = 1 
Query:    1 IPMQNLTAPGDWNRQHTPLKHFNWSEGCFNFHFIDKETTDGGPSH 135
            IP  NLT PGDW    TPL++F+W  GC    F D     G P H
Sbjct:  101 IPNSNLTRPGDWKYNETPLRNFHWGHGCQRLCFFD-----GRPYH 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106974.574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LGF8_ECTSI5.810e-2186.36OSJNBa0029H02.30 n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5J9H9_9PHAE1.830e-2086.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZHG4_9STRA1.070e-1463.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1E7FVA1_9STRA2.870e-546.67Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106974contigH-elongata_contig106974:1193..1327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue7.8e-16
Seed eggNOG ortholog2880.D8LGF8
Preferred nameTRAPPC9
KEGG koko:K20306
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000910,GO:0000911,GO:0000916,GO:0000919,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0005801,GO:0005802,GO:0005829,GO:0005886,GO:0006355,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006892,GO:0006893,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007107,GO:0007110,GO:0007111,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0017016,GO:0017112,GO:0017137,GO:0019219,GO:0019222,GO:0019899,GO:0019953,GO:0021537,GO:0021543,GO:0021987,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030008,GO:0030029,GO:0030036,GO:0030154,GO:0030182,GO:0030427,GO:0030865,GO:0030866,GO:0030900,GO:0031032,GO:0031267,GO:0031323,GO:0031326,GO:0031410,GO:0031982,GO:0031984,GO:0032153,GO:0032154,GO:0032155,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032991,GO:0033036,GO:0033206,GO:0034498,GO:0034613,GO:0035838,GO:0036063,GO:0036213,GO:0042147,GO:0042886,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044837,GO:0045184,GO:0046907,GO:0048137,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048285,GO:0048513,GO:0048518,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051286,GO:0051301,GO:0051321,GO:0051336,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0060255,GO:0060322,GO:0061024,GO:0061640,GO:0061796,GO:0061982,GO:0061983,GO:0065003,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090114,GO:0097708,GO:0098590,GO:0098772,GO:0098791,GO:0098876,GO:0099023,GO:0140013,GO:1902410,GO:1903046,GO:1903047,GO:1903506,GO:1990071,GO:2000112,GO:2001141
EggNOG free text desc.cell plate assembly
EggNOG OGsKOG1953@1,KOG1953@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size129
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929599.8220673-CDS-H-elongata_contig106974:1192..13211622929599.8220673-CDS-H-elongata_contig106974:1192..1321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106974 1193..1321 -
1691679086.3326948-CDS-H-elongata_contig106974:1192..13211691679086.3326948-CDS-H-elongata_contig106974:1192..1321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106974 1193..1321 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929599.8370638-UTR-H-elongata_contig106974:1321..13271622929599.8370638-UTR-H-elongata_contig106974:1321..1327Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106974 1322..1327 -
1691679086.3494-UTR-H-elongata_contig106974:1321..13271691679086.3494-UTR-H-elongata_contig106974:1321..1327Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106974 1322..1327 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106974.574.1prot_H-elongata_contig106974.574.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106974 1193..1321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106974.574.1

>prot_H-elongata_contig106974.574.1 ID=prot_H-elongata_contig106974.574.1|Name=mRNA_H-elongata_contig106974.574.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MQNLTAPGDWNRQHTPLKHFNWSEGCFNFHFIDKETTDGGPSH
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mRNA from alignment at H-elongata_contig106974:1193..1327-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106974.574.1 ID=mRNA_H-elongata_contig106974.574.1|Name=mRNA_H-elongata_contig106974.574.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig106974:1193..1327- (Himanthalia elongata Himel1 dioecious)
ATCCCGATGCAGAACCTGACCGCGCCCGGTGACTGGAACCGGCAACACAC
CCCCCTGAAGCACTTCAACTGGTCGGAGGGCTGCTTCAACTTCCACTTCA
TCGACAAGGAAACCACCGACGGCGGGCCGAGCCAT
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Coding sequence (CDS) from alignment at H-elongata_contig106974:1193..1327-

>mRNA_H-elongata_contig106974.574.1 ID=mRNA_H-elongata_contig106974.574.1|Name=mRNA_H-elongata_contig106974.574.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig106974:1193..1327- (Himanthalia elongata Himel1 dioecious)
ATGCAGAACCTGACCGCGCCCGGTGACTGGAACCGGCAACACACCCCCCT
GAAGCACTTCAACTGGTCGGAGGGCTGCTTCAACTTCCACTTCATCGACA
AGGAAACCACCGACGGCGGGCCGAGCCATATGCAGAACCTGACCGCGCCC
GGTGACTGGAACCGGCAACACACCCCCCTGAAGCACTTCAACTGGTCGGA
GGGCTGCTTCAACTTCCACTTCATCGACAAGGAAACCACCGACGGCGGGC
CGAGCCAT
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