mRNA_H-elongata_contig10696.572.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig10696.572.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT) HSP 1 Score: 114 bits (284), Expect = 1.220e-25 Identity = 68/205 (33.17%), Postives = 116/205 (56.59%), Query Frame = 1
Query: 7 VPRTKARKVIGTRTVFKRKEGSDGDVERYKCKFVVQGFR*VPSLEDKESFALTPAAASIMMSLGEVTLEDWEAHNVDVEQAFIRPAMEE-IYIKLPEEFHDF--PGAVGKLTRSLYGIVQASRNWNTHLTNTT*ETGFKQSLADPCVLREMDK---GGVLTSIMVVHVDNLLLGSRSVETMGESKQELAEAVAIKPLIELIFYVG 603
VP K + ++G+R VFK K +DG VER+K + V QG+ ++ +E F+ SI L + DWE +DV+ AF++ ++E I++K PE + D P V KL RS+YG+ QA+R WN+ + G+ +S ADPC+ + K G + I+ ++VD++L S + E + + K+ LA+ ++ + E+ + +G
Sbjct: 849 VPPPKGKNIVGSRWVFKVKHTADGSVERFKARLVAQGYSQSQGIDYQEIFSPVVRYTSIRSLLAVANICDWEISQMDVKTAFLQGELDEVIFMKQPEGYVDQERPDHVCKLNRSIYGLKQAARCWNSAIDTFLISNGYTKSNADPCIYIKSIKRKNGKIDFVILALYVDDILWFSNNTEMLKKEKEALAKRFQVEDMGEVSYVLG 1053
BLAST of mRNA_H-elongata_contig10696.572.1 vs. uniprot
Match: A0A0V0IXE8_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0IXE8_SOLCH) HSP 1 Score: 112 bits (280), Expect = 3.610e-25 Identity = 66/197 (33.50%), Postives = 112/197 (56.85%), Query Frame = 1
Query: 25 RKVIGTRTVFKRKEGSDGDVERYKCKFVVQGFR*VPSLEDKESFALTPAAASIMMSLGEVTLEDWEAHNVDVEQAFIRPAM-EEIYIKLPEEFHD---FPGAVGKLTRSLYGIVQASRNWNTHLTNTT*ETGFKQSLADPCVLREMDKGGVLTSIMVVHVDNLLLGSRSVETMGESKQELAEAVAIKPLIELIFYVG 603
+K IG R V+K K +DG+VER+K + V +G+ L+ E+F+ +++ + ++ W+ + +DV AF++ + EE+Y+ +PE F G V +L +SLYG+ QASR WN LT +GF QS D + +MD ++ +++V+VD+LLL + + +K+ L A IK L EL +++G
Sbjct: 483 KKAIGCRWVYKIKYKADGEVERFKARLVAKGYSQKEGLDYHETFSPVVRMSTVRAVISVAAIKGWKLYQMDVYNAFLQGDLYEEVYMNIPEGFSRQKRTDGKVCRLLKSLYGLKQASRQWNIKLTKALTSSGFHQSTRDYSLFTKMDGDKIV--VVMVYVDDLLLTGNDLSMIQHTKETLHTAFKIKDLGELRYFLG 677
BLAST of mRNA_H-elongata_contig10696.572.1 vs. uniprot
Match: UPI000900F50B (uncharacterized protein LOC109153165 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000900F50B) HSP 1 Score: 110 bits (275), Expect = 3.810e-25 Identity = 65/193 (33.68%), Postives = 108/193 (55.96%), Query Frame = 1
Query: 31 VIGTRTVFKRKEGSDGDVERYKCKFVVQGFR*VPSLEDKESFALTPAAASIMMSLGEVTLEDWEAHNVDVEQAFIRPAM-EEIYIKLPEEFH-DFPGAVGKLTRSLYGIVQASRNWNTHLTNTT*ETGFKQSLADPCVLREMDKGGVLTSIMVVHVDNLLLGSRSVETMGESKQELAEAVAIKPLIELIFYVG 603
+IG + +FK K SDG VER+K + V +GF ++ E+F+ +I L T +DW H +DV AF+ + E++Y+ LP F + P V KL RSLYG+ QASR WN L++ + GF+QS +P +L + + ++++VD+++ S S++ + K+ L A IK L + +++G
Sbjct: 25 LIGCKWIFKVKLRSDGTVERHKARLVAKGFTQQFGVDYLETFSPVARLTTIRTLLAVTTSKDWNIHQMDVNNAFLHDDLNEDVYMVLPPGFQSEKPNQVCKLLRSLYGLKQASRQWNEKLSSALLQIGFQQSKTEPSLLTKGVDDNFIA--LLIYVDDIIAASPSIQAINAVKEFLDAAFKIKDLGSISYFLG 215
BLAST of mRNA_H-elongata_contig10696.572.1 vs. uniprot
Match: UPI00125DF641 (uncharacterized protein LOC116033393 n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125DF641) HSP 1 Score: 111 bits (278), Expect = 8.250e-25 Identity = 71/192 (36.98%), Postives = 105/192 (54.69%), Query Frame = 1
Query: 34 IGTRTVFKRKEGSDGDVERYKCKFVVQGFR*VPSLEDKESFALTPAAASIMMSLGEVTLEDWEAHNVDVEQAFIRPAM-EEIYIKLPEEFHDF-PGAVGKLTRSLYGIVQASRNWNTHLTNTT*ETGFKQSLADPCVLREMDKGGVLTSIMVVHVDNLLLGSRSVETMGESKQELAEAVAIKPLIELIFYVG 603
IG + VFK K +DG +ER+K + V +G+ ++ E+F+ +I L T +W H +D+ AF+ + EE+Y+ LP F P V KLTRSLYG+ QASR WN LT GF+QS ADP + K V +++V +VD++L+ S +E + E K L A IK L L +++G
Sbjct: 2249 IGCKWVFKTKLKADGSIERHKARLVAKGYTQQLGVDYIETFSPVARLTTIRTFLAVATSRNWYIHQMDINNAFLHGDLKEEVYMVLPPGFQGTKPNQVCKLTRSLYGLKQASRQWNAKLTTALLNVGFRQSNADPSLFTR-GKDDVFVALLV-YVDDILVASGRMELIQELKDLLNAAFKIKDLGVLGYFLG 2438
BLAST of mRNA_H-elongata_contig10696.572.1 vs. uniprot
Match: UPI000B5D3A59 (uncharacterized mitochondrial protein AtMg00810-like n=2 Tax=Manihot esculenta TaxID=3983 RepID=UPI000B5D3A59) HSP 1 Score: 108 bits (271), Expect = 1.870e-24 Identity = 67/203 (33.00%), Postives = 110/203 (54.19%), Query Frame = 1
Query: 1 TQVPRTKARKVIGTRTVFKRKEGSDGDVERYKCKFVVQGFR*VPSLEDKESFALTPAAASIMMSLGEVTLEDWEAHNVDVEQAFIRPAM-EEIYIKLPEEFHDF-PGAVGKLTRSLYGIVQASRNWNTHLTNTT*ETGFKQSLADPCVLREMDKGGVLTSIMVVHVDNLLLGSRSVETMGESKQELAEAVAIKPLIELIFYVG 603
T +P+ K K IG + V+K K +GDVERYK + V +G+ + L+ K+ F+ ++ + + T + W +D+ AF+ + EE+ + P+ +H PG V L RSLYG+ QASR WN TN + GF QS D C+ + G L I++V+VD+++L S++ + + K L IK L + +++G
Sbjct: 17 TTLPKNK--KAIGCKWVYKVKFKPNGDVERYKARLVAKGYNQIEGLDYKDRFSPVAKLTTVRILIVMATSKQWPIFQLDINNAFLHGYLNEEVCLTPPQGYHKAQPGQVCLLKRSLYGLKQASRQWNIEFTNFLKKLGFVQSPHDYCLFTQHT--GNLILILLVYVDDVILTGNSIDAINKCKLALDSKFTIKDLGPMKYFLG 215
BLAST of mRNA_H-elongata_contig10696.572.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT) HSP 1 Score: 110 bits (274), Expect = 2.650e-24 Identity = 68/209 (32.54%), Postives = 112/209 (53.59%), Query Frame = 1
Query: 7 VPRTKARKVIGTRTVFKRKEGSDGDVERYKCKFVVQGFR*VPSLEDKESFALTPAAASIMMSLGEVTLEDWEAHNVDVEQAFIRPAM-EEIYIKLPEEFH--DFPGAVGKLTRSLYGIVQASRNWNTHLTNTT*ETGFKQSLADPCVLRE---MDKGGVLTSIMVVHVDNLLLGSRSVETMGESKQELAEAVAIKPLIELIFYVGCLTE 615
VP + ++G+R VFK K +DG VE++K + V QG+ ++ E F+ SI L + DWE H +DV AF++ + +EIY+K PE + + P V KL +SLYG+ Q++R WN+ L + +G+KQ AD C+ + + G + I+ +HVD++L S V + E K + ++ L E+ +G L +
Sbjct: 868 VPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVRTAFLQGDLTDEIYMKQPEGYRSKENPDHVCKLKKSLYGLKQSARCWNSTLDSFLKSSGYKQVGADSCLYMKSVKLQNGKINFVILSIHVDDILWFSNDVIMLEEEKVAIGTKFKVEDLGEVSHILGMLIK 1076
BLAST of mRNA_H-elongata_contig10696.572.1 vs. uniprot
Match: A0A1R3J2F1_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3J2F1_COCAP) HSP 1 Score: 108 bits (271), Expect = 6.730e-24 Identity = 66/192 (34.38%), Postives = 108/192 (56.25%), Query Frame = 1
Query: 34 IGTRTVFKRKEGSDGDVERYKCKFVVQGFR*VPSLEDKESFALTPAAASIMMSLGEVTLEDWEAHNVDVEQAFIRPAM-EEIYIKLPEEFHDFPGAVGKLTRSLYGIVQASRNWNTHLTNTT*ETGFKQSLADPCV-LREMDKGGVLTSIMVVHVDNLLLGSRSVETMGESKQELAEAVAIKPLIELIFYVG 603
IG + V+K K +DG +ERYK + V +G+ ++ ++F+ A+I L L+ W H DV F+ + EE+Y+KLPE + + V KL +SLYG+ QASR WN LT + + GF QS AD + ++ +DK + ++V+VD++++ S + + K L + +IK L EL F++G
Sbjct: 976 IGCKWVYKVKRKADGSIERYKARLVAKGYTQQEGVDYLDTFSPVAKIATIRTLLVVAALKGWYLHQCDVNTTFLHGDLSEEVYMKLPEGYLEGSTKVCKLVKSLYGLKQASRQWNLKLTESLIKYGFHQSQADHTLFIKFVDKNFIA---LLVYVDDIIVASNDITEVINIKAYLHDLFSIKDLGELKFFLG 1164
BLAST of mRNA_H-elongata_contig10696.572.1 vs. uniprot
Match: A0A2K3PMG3_TRIPR (Flavonol sulfotransferase-like protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3PMG3_TRIPR) HSP 1 Score: 108 bits (271), Expect = 6.740e-24 Identity = 67/201 (33.33%), Postives = 110/201 (54.73%), Query Frame = 1
Query: 7 VPRTKARKVIGTRTVFKRKEGSDGDVERYKCKFVVQGFR*VPSLEDKESFALTPAAASIMMSLGEVTLEDWEAHNVDVEQAFIRPAM-EEIYIKLPEEFH-DFPGAVGKLTRSLYGIVQASRNWNTHLTNTT*ETGFKQSLADPCVLREMDKGGVLTSIMVVHVDNLLLGSRSVETMGESKQELAEAVAIKPLIELIFYVG 603
VP K + IG + VFK K ++G +ERYK + V +G+ ++ ++F+ +I M L +++W + +DV AF+ + EE+Y+K P P V KL RSLYG+ QASR WNT LT T +G+ QS +D + + G ++++V+VD+L+LG + + + K L +IK L L +++G
Sbjct: 973 VPLPKHKHAIGCKWVFKLKLHANGTIERYKARLVAKGYTQTEGIDYMDTFSPVVKMTTIRMFLAIAAIQNWPLYQLDVNTAFLHGDLDEEVYMKPPPGLDLPSPNLVCKLQRSLYGLKQASRQWNTKLTQTLLSSGYTQSKSDYSLFTKQASSGF--TVILVYVDDLVLGGTDDKEIQKIKALLDRKFSIKDLGTLKYFLG 1171
BLAST of mRNA_H-elongata_contig10696.572.1 vs. uniprot
Match: A0A2U1NFL3_ARTAN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1NFL3_ARTAN) HSP 1 Score: 108 bits (269), Expect = 8.290e-24 Identity = 68/202 (33.66%), Postives = 111/202 (54.95%), Query Frame = 1
Query: 25 RKVIGTRTVFKRKEGSDGDVERYKCKFVVQGFR*VPSLEDKESFALTPAAASIMMSLGEVTLEDWEAHNVDVEQAFIRPAMEE-IYIKLPEEFHD-FPGAVGKLTRSLYGIVQASRNWNTHLTNTT*ETGFKQSLADPCVLREMDKGGVLTSIMVVHVDNLLLGSRSVETMGESKQELAEAVAIKPLIELIFYVG---CLTE 615
+K I ++ VFK K DG +++YK + V++GF ++ K +F+ AA++ + + T + W H +DV AF+ +EE IY+K PE ++ PG V KL +SLYG+ QASR WN L+ G+KQS D + + + G ++ +V+VD++LL E + +K+ L IK L +++G C TE
Sbjct: 76 KKAISSKWVFKIKYFPDGSIDKYKARLVIRGFDQREGMDYKHTFSPVAKAATVRVLIAIATAKGWPLHQLDVNNAFLHGYVEEEIYMKPPEGYNKALPGQVCKLNKSLYGLKQASRQWNQELSRFLVSLGYKQSKQDYSLFIKAE--GDKFTVALVYVDDILLTGNCQEEIDATKKALDMKFTIKDLGLARYFLGIELCRTE 275
BLAST of mRNA_H-elongata_contig10696.572.1 vs. uniprot
Match: UPI0009019D25 (uncharacterized protein LOC109193309 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI0009019D25) HSP 1 Score: 106 bits (265), Expect = 8.540e-24 Identity = 70/196 (35.71%), Postives = 106/196 (54.08%), Query Frame = 1
Query: 22 ARKVIGTRTVFKRKEGSDGDVERYKCKFVVQGFR*VPSLEDKESFALTPAAASIMMSLGEVTLEDWEAHNVDVEQAFIRPAM-EEIYIKLPEEF-HDFPGAVGKLTRSLYGIVQASRNWNTHLTNTT*ETGFKQSLADPCVLREMDKGGVLTSIMVVHVDNLLLGSRSVETMGESKQELAEAVAIKPLIELIFYVG 603
+++VIG R V+K K SDG +ER K + VV+G+ L+ ++F L SI L + W+ H +DV AF+ + EE+Y++LP F G V KLT+SL+G+ QASR WN LT GFKQ++ D + + G L +++V +VD+ +L S + + K L IK L L F++G
Sbjct: 22 SKQVIGCRWVYKVKYKSDGTIERCKARLVVKGYTQTCGLDYIDTFNLVAKITSIRTLLAMAAAKGWKLHQLDVNNAFLYGDLHEEVYMQLPPGFVAQHSGQVCKLTKSLFGLKQASRQWNFKLTAKLISLGFKQAVCDNSLFTK-GSGDNLVALLV-YVDDFILASNDGNQIQQIKDHLHATFQIKDLGNLRFFLG 215 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10696.572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10696.572.1 >prot_H-elongata_contig10696.572.1 ID=prot_H-elongata_contig10696.572.1|Name=mRNA_H-elongata_contig10696.572.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp MMSLGEVTLEDWEAHNVDVEQAFIRPAMEEIYIKLPEEFHDFPGAVGKLTback to top mRNA from alignment at H-elongata_contig10696:7007..7621- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10696.572.1 ID=mRNA_H-elongata_contig10696.572.1|Name=mRNA_H-elongata_contig10696.572.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=615bp|location=Sequence derived from alignment at H-elongata_contig10696:7007..7621- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10696:7007..7621- >mRNA_H-elongata_contig10696.572.1 ID=mRNA_H-elongata_contig10696.572.1|Name=mRNA_H-elongata_contig10696.572.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig10696:7007..7621- (Himanthalia elongata Himel1 dioecious)back to top |