mRNA_H-elongata_contig106762.555.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106762.555.1
Unique NamemRNA_H-elongata_contig106762.555.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig106762.555.1 vs. uniprot
Match: A0A6H5KJ68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ68_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 6.990e-5
Identity = 101/302 (33.44%), Postives = 130/302 (43.05%), Query Frame = 1 
Query:  358 ARQDIEETLLMANKELQRLKVKCEEATSETEAARAESKSLKAALETARATAANHAKFDNKKEKEHYNDNQXXXXXASTARRDSRAEMAQLREKIVELERAR-EVGRYSARGTSGGGSERNRQRGGDSLEERLET------GKAKADAENEIDEEMDSLRADLRRAREEAAARAAGLETQLADRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAPSSGGARSIADSRGSNTDSGSGKQGNVQRKGAKDPAALGAEVGSTVGGILRGKLWSGWG 1242
            AR  +EETLLMANKELQRLK+K EEA S +   R E + LKA +ET RA A   A  D   +    +         +    +   E A+LR  + E++R   EVG    RG  G  S  + +   DS  +  E       GK +A  + +I  E DSLRA+L      A+ +             XXXXXXXXX                                                 PSS  A S+    G    +G G   + +  G +DPA++GAEVG  VGGILRGK WSGWG
Sbjct:  527 ARLAVEETLLMANKELQRLKIKNEEALSASNGLREECEVLKATVETLRAAAVA-AAGDGGNKLNDVSTAVATQTDEAEENEEKEGEFARLRAVVEEMKRGGDEVG--VVRGCVGDVSSHDGRDPDDSGSDEEEGDGARRHGKGRASTKRQILAERDSLRAEL------ASEKEXXXXXXXXXXXXXXXXXXXXXDTQRRLYLRQSELETELEDLNAHHDALRVELARMDASIENASDASLRRIPSSS-ATSMVGRGGGRLRAGGGSVASPKSTG-RDPASIGAEVGGAVGGILRGKFWSGWG 817
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106762.555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJ68_9PHAE6.990e-533.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106762contigH-elongata_contig106762:89..1772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1242
Cds size1242
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106762.555.1prot_H-elongata_contig106762.555.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106762 89..1772 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929597.767677-CDS-H-elongata_contig106762:88..2051622929597.767677-CDS-H-elongata_contig106762:88..205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106762 89..205 +
1691679085.269918-CDS-H-elongata_contig106762:88..2051691679085.269918-CDS-H-elongata_contig106762:88..205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106762 89..205 +
1622929597.7807941-CDS-H-elongata_contig106762:259..5411622929597.7807941-CDS-H-elongata_contig106762:259..541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106762 260..541 +
1691679085.2792938-CDS-H-elongata_contig106762:259..5411691679085.2792938-CDS-H-elongata_contig106762:259..541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106762 260..541 +
1622929597.8099174-CDS-H-elongata_contig106762:727..12161622929597.8099174-CDS-H-elongata_contig106762:727..1216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106762 728..1216 +
1691679085.2886415-CDS-H-elongata_contig106762:727..12161691679085.2886415-CDS-H-elongata_contig106762:727..1216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106762 728..1216 +
1622929597.842822-CDS-H-elongata_contig106762:1418..17721622929597.842822-CDS-H-elongata_contig106762:1418..1772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106762 1419..1772 +
1691679085.2978432-CDS-H-elongata_contig106762:1418..17721691679085.2978432-CDS-H-elongata_contig106762:1418..1772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106762 1419..1772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106762.555.1

>prot_H-elongata_contig106762.555.1 ID=prot_H-elongata_contig106762.555.1|Name=mRNA_H-elongata_contig106762.555.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=414bp
RKEAATAVAATASRVADLEVLLEEAKADRDAALEATASKMAEVKAVANAR
VVEVERARDAAEKGAREEAARASTAQAAVTQLKSKAAQLKEQRVVAVKAS
RKSQADKDAAIEATAAATTARQDIEETLLMANKELQRLKVKCEEATSETE
AARAESKSLKAALETARATAANHAKFDNKKEKEHYNDNQDNQDDASTARR
DSRAEMAQLREKIVELERAREVGRYSARGTSGGGSERNRQRGGDSLEERL
ETGKAKADAENEIDEEMDSLRADLRRAREEAAARAAGLETQLADREREAA
DTQRRLYRHQSELEAELEEVRANYDALRIEMARMDASMQDAADSQADASS
SLVSAPSSGGARSIADSRGSNTDSGSGKQGNVQRKGAKDPAALGAEVGST
VGGILRGKLWSGWG
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mRNA from alignment at H-elongata_contig106762:89..1772+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106762.555.1 ID=mRNA_H-elongata_contig106762.555.1|Name=mRNA_H-elongata_contig106762.555.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1684bp|location=Sequence derived from alignment at H-elongata_contig106762:89..1772+ (Himanthalia elongata Himel1 dioecious)
AGGAAAGAGGCGGCAACGGCAGTGGCCGCGACTGCCTCGCGCGTCGCCGA
TCTCGAAGTGCTGCTCGAAGAAGCCAAGGCGGATCGAGACGCTGCGTTGG
AAGCCACGGCATCGAAAGTATTAGCGATGCAGAAGCGCGAGTCGGAGCGC
ACGGCGGCGGAAGAGGCTAAGATGGCAGAGGTCAAGGCGGTGGCCAACGC
AAGGGTTGTGGAGGTGGAGAGAGCGAGAGATGCCGCGGAGAAGGGAGCGC
GCGAGGAGGCCGCTCGAGCGTCCACGGCGCAGGCGGCGGTTACTCAACTA
AAATCGAAGGCGGCGCAGCTAAAGGAGCAGCGGGTTGTGGCGGTGAAGGC
TTCCCGAAAATCTCAAGCAGATAAAGATGCGGCCATCGAAGCTACGGCAG
CGGCGACCACAGCGAGGCAGGACATCGAGGAGACGTTGTTGATGGCAAAT
AAGGTGGGTAGGGCCCTCCGTATTTATAGACTGTAGGGTGCGTGGTCCAA
TCTGAGTGACGCTTGGTGCAGGTAAGTCGCGTAAGGAATATAGTGTGTCA
ATGAGGGTGTAAGAAGAGCGATTAATTAATCCGACTTACACCCGGTGCAT
CACCGAAAACATACCGTCGAAATCATCACGAACGAACAGGAGCTTCAGCG
GCTGAAAGTCAAGTGCGAGGAGGCCACATCAGAGACCGAGGCGGCTCGTG
CCGAATCGAAAAGCCTCAAAGCGGCGTTGGAGACCGCTCGCGCTACAGCC
GCCAATCATGCGAAATTTGACAATAAGAAAGAAAAAGAGCATTACAACGA
CAACCAGGATAATCAGGATGATGCCAGTACCGCTCGACGAGATTCTCGCG
CGGAAATGGCGCAGCTGCGAGAGAAAATCGTAGAGCTGGAGCGAGCTCGA
GAAGTCGGCCGCTATAGCGCCAGAGGAACAAGTGGCGGTGGGTCTGAGAG
AAATCGGCAGCGAGGTGGTGATAGCCTCGAGGAAAGGCTGGAAACGGGGA
AAGCAAAAGCTGACGCAGAAAACGAGATTGATGAGGAGATGGATAGCTTG
CGGGCGGATCTACGGCGGGCCCGGGAGGAGGCTGCCGCGCGCGCGGCTGG
GTTGGAGACGCAGCTCGCCGACAGGGAGGTACGATTCAATCCACCCCATT
TTCACCCGGCTCCCGTCTCGCCTGTTCAATTCTGATGTGTGCGCATCTCT
GTGGTGTACCAAGAGCCTCAACACCTGTTGTTTTGACTATCGTTATTTTA
ATTTCTCTGTATCACGTACACGTCGCCTTAAACTCTTCCTCCTTCTTCGC
TACTGCCGCCGCTGGAAAAACAAACCGTAGCGCGAGGCAGCGGATACCCA
GCGACGCCTCTACCGTCACCAGTCCGAGCTCGAGGCCGAACTTGAAGAAG
TGCGCGCCAACTACGACGCCCTCCGTATCGAGATGGCGAGGATGGACGCG
TCCATGCAGGACGCCGCTGATTCCCAGGCCGATGCTTCGTCTTCCCTGGT
ATCGGCGCCCTCGAGCGGCGGCGCACGCAGCATTGCGGATAGCAGGGGCA
GCAATACCGACAGTGGCAGCGGGAAGCAAGGCAACGTCCAGCGCAAGGGT
GCTAAAGACCCGGCCGCTCTCGGGGCCGAGGTCGGGAGCACGGTCGGGGG
CATCTTGAGGGGGAAGCTTTGGTCCGGCTGGGGA
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Coding sequence (CDS) from alignment at H-elongata_contig106762:89..1772+

>mRNA_H-elongata_contig106762.555.1 ID=mRNA_H-elongata_contig106762.555.1|Name=mRNA_H-elongata_contig106762.555.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2484bp|location=Sequence derived from alignment at H-elongata_contig106762:89..1772+ (Himanthalia elongata Himel1 dioecious)
AGGAAAGAGGCGGCAACGGCAGTGGCCGCGACTGCCTCGCGCGTCGCCGA
TCTCGAAGTGCTGCTCGAAGAAGCCAAGGCGGATCGAGACGCTGCGTTGG
AAGCCACGGCATCGAAAAGGAAAGAGGCGGCAACGGCAGTGGCCGCGACT
GCCTCGCGCGTCGCCGATCTCGAAGTGCTGCTCGAAGAAGCCAAGGCGGA
TCGAGACGCTGCGTTGGAAGCCACGGCATCGAAAATGGCAGAGGTCAAGG
CGGTGGCCAACGCAAGGGTTGTGGAGGTGGAGAGAGCGAGAGATGCCGCG
GAGAAGGGAGCGCGCGAGGAGGCCGCTCGAGCGTCCACGGCGCAGGCGGC
GGTTACTCAACTAAAATCGAAGGCGGCGCAGCTAAAGGAGCAGCGGGTTG
TGGCGGTGAAGGCTTCCCGAAAATCTCAAGCAGATAAAGATGCGGCCATC
GAAGCTACGGCAGCGGCGACCACAGCGAGGCAGGACATCGAGGAGACGTT
GTTGATGGCAAATAAGATGGCAGAGGTCAAGGCGGTGGCCAACGCAAGGG
TTGTGGAGGTGGAGAGAGCGAGAGATGCCGCGGAGAAGGGAGCGCGCGAG
GAGGCCGCTCGAGCGTCCACGGCGCAGGCGGCGGTTACTCAACTAAAATC
GAAGGCGGCGCAGCTAAAGGAGCAGCGGGTTGTGGCGGTGAAGGCTTCCC
GAAAATCTCAAGCAGATAAAGATGCGGCCATCGAAGCTACGGCAGCGGCG
ACCACAGCGAGGCAGGACATCGAGGAGACGTTGTTGATGGCAAATAAGGA
GCTTCAGCGGCTGAAAGTCAAGTGCGAGGAGGCCACATCAGAGACCGAGG
CGGCTCGTGCCGAATCGAAAAGCCTCAAAGCGGCGTTGGAGACCGCTCGC
GCTACAGCCGCCAATCATGCGAAATTTGACAATAAGAAAGAAAAAGAGCA
TTACAACGACAACCAGGATAATCAGGATGATGCCAGTACCGCTCGACGAG
ATTCTCGCGCGGAAATGGCGCAGCTGCGAGAGAAAATCGTAGAGCTGGAG
CGAGCTCGAGAAGTCGGCCGCTATAGCGCCAGAGGAACAAGTGGCGGTGG
GTCTGAGAGAAATCGGCAGCGAGGTGGTGATAGCCTCGAGGAAAGGCTGG
AAACGGGGAAAGCAAAAGCTGACGCAGAAAACGAGATTGATGAGGAGATG
GATAGCTTGCGGGCGGATCTACGGCGGGCCCGGGAGGAGGCTGCCGCGCG
CGCGGCTGGGTTGGAGACGCAGCTCGCCGACAGGGAGGAGCTTCAGCGGC
TGAAAGTCAAGTGCGAGGAGGCCACATCAGAGACCGAGGCGGCTCGTGCC
GAATCGAAAAGCCTCAAAGCGGCGTTGGAGACCGCTCGCGCTACAGCCGC
CAATCATGCGAAATTTGACAATAAGAAAGAAAAAGAGCATTACAACGACA
ACCAGGATAATCAGGATGATGCCAGTACCGCTCGACGAGATTCTCGCGCG
GAAATGGCGCAGCTGCGAGAGAAAATCGTAGAGCTGGAGCGAGCTCGAGA
AGTCGGCCGCTATAGCGCCAGAGGAACAAGTGGCGGTGGGTCTGAGAGAA
ATCGGCAGCGAGGTGGTGATAGCCTCGAGGAAAGGCTGGAAACGGGGAAA
GCAAAAGCTGACGCAGAAAACGAGATTGATGAGGAGATGGATAGCTTGCG
GGCGGATCTACGGCGGGCCCGGGAGGAGGCTGCCGCGCGCGCGGCTGGGT
TGGAGACGCAGCTCGCCGACAGGGAGCGCGAGGCAGCGGATACCCAGCGA
CGCCTCTACCGTCACCAGTCCGAGCTCGAGGCCGAACTTGAAGAAGTGCG
CGCCAACTACGACGCCCTCCGTATCGAGATGGCGAGGATGGACGCGTCCA
TGCAGGACGCCGCTGATTCCCAGGCCGATGCTTCGTCTTCCCTGGTATCG
GCGCCCTCGAGCGGCGGCGCACGCAGCATTGCGGATAGCAGGGGCAGCAA
TACCGACAGTGGCAGCGGGAAGCAAGGCAACGTCCAGCGCAAGGGTGCTA
AAGACCCGGCCGCTCTCGGGGCCGAGGTCGGGAGCACGGTCGGGGGCATC
TTGAGGGGGAAGCTTTGGTCCGGCTGGGGACGCGAGGCAGCGGATACCCA
GCGACGCCTCTACCGTCACCAGTCCGAGCTCGAGGCCGAACTTGAAGAAG
TGCGCGCCAACTACGACGCCCTCCGTATCGAGATGGCGAGGATGGACGCG
TCCATGCAGGACGCCGCTGATTCCCAGGCCGATGCTTCGTCTTCCCTGGT
ATCGGCGCCCTCGAGCGGCGGCGCACGCAGCATTGCGGATAGCAGGGGCA
GCAATACCGACAGTGGCAGCGGGAAGCAAGGCAACGTCCAGCGCAAGGGT
GCTAAAGACCCGGCCGCTCTCGGGGCCGAGGTCGGGAGCACGGTCGGGGG
CATCTTGAGGGGGAAGCTTTGGTCCGGCTGGGGA
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