mRNA_H-elongata_contig106758.552.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106758.552.1
Unique NamemRNA_H-elongata_contig106758.552.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106758.552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106758contigH-elongata_contig106758:1584..2164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size581
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106758.552.1prot_H-elongata_contig106758.552.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106758 1676..2035 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929597.2605414-UTR-H-elongata_contig106758:1583..16751622929597.2605414-UTR-H-elongata_contig106758:1583..1675Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106758 1584..1675 +
1691679085.0590186-UTR-H-elongata_contig106758:1583..16751691679085.0590186-UTR-H-elongata_contig106758:1583..1675Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106758 1584..1675 +
1622929597.2856636-UTR-H-elongata_contig106758:2035..21641622929597.2856636-UTR-H-elongata_contig106758:2035..2164Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106758 2036..2164 +
1691679085.0855315-UTR-H-elongata_contig106758:2035..21641691679085.0855315-UTR-H-elongata_contig106758:2035..2164Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106758 2036..2164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929597.2750847-CDS-H-elongata_contig106758:1675..20351622929597.2750847-CDS-H-elongata_contig106758:1675..2035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106758 1676..2035 +
1691679085.0723917-CDS-H-elongata_contig106758:1675..20351691679085.0723917-CDS-H-elongata_contig106758:1675..2035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106758 1676..2035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106758.552.1

>prot_H-elongata_contig106758.552.1 ID=prot_H-elongata_contig106758.552.1|Name=mRNA_H-elongata_contig106758.552.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MIWDLVDRISFRGDGGGSILGLIRFQDSYNSTAPRVECMYYVCIYVFIFI
KLHITAQSGSVILLTLLGPGDSDSAIMNSPGSKTEPAVILPIIKKMPNWQ
KNIRLIFIYKELWHYKTPL*
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mRNA from alignment at H-elongata_contig106758:1584..2164+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106758.552.1 ID=mRNA_H-elongata_contig106758.552.1|Name=mRNA_H-elongata_contig106758.552.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=581bp|location=Sequence derived from alignment at H-elongata_contig106758:1584..2164+ (Himanthalia elongata Himel1 dioecious)
GCGAAATATGGCTGGCCCCTACTTCAAACGAACAGCGCTACTATAATAGT
ACCAAGGAGAGTGGAACGTAGCACTTGGACCTTGATCTCACCATGATTTG
GGATCTCGTTGATCGTATAAGCTTCCGAGGGGATGGGGGAGGCAGTATAT
TAGGTCTGATTCGATTCCAAGATAGTTACAACTCGACAGCTCCAAGAGTA
GAATGTATGTATTATGTATGTATTTATGTATTTATATTTATTAAATTGCA
CATAACTGCGCAATCCGGTTCTGTCATCCTATTAACCCTTCTGGGGCCGG
GCGATTCCGACAGTGCGATCATGAATAGCCCGGGTTCCAAAACTGAACCA
GCAGTAATTCTTCCGATAATCAAGAAAATGCCCAACTGGCAGAAAAATAT
TAGATTAATCTTTATTTATAAGGAATTGTGGCATTATAAAACACCTCTCT
GAAACCAAGACAATAATATTCGTTTCGTGCTCCTTGGGAAATGATCCCTG
GCTTGGTATTGAAGCTCCCAACCTAGTAAATGCACTTCTTGTACTTTTAG
CTCTGCTGGAGGCTTTTTGTTCTTTTAGTTG
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Coding sequence (CDS) from alignment at H-elongata_contig106758:1584..2164+

>mRNA_H-elongata_contig106758.552.1 ID=mRNA_H-elongata_contig106758.552.1|Name=mRNA_H-elongata_contig106758.552.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig106758:1584..2164+ (Himanthalia elongata Himel1 dioecious)
ATGATTTGGGATCTCGTTGATCGTATAAGCTTCCGAGGGGATGGGGGAGG
CAGTATATTAGGTCTGATTCGATTCCAAGATAGTTACAACTCGACAGCTC
CAAGAGTAGAATGTATGTATTATGTATGTATTTATGTATTTATATTTATT
AAATTGCACATAACTGCGCAATCCGGTTCTGTCATCCTATTAACCCTTCT
GGGGCCGGGCGATTCCGACAGTGCGATCATGAATAGCCCGGGTTCCAAAA
CTGAACCAGCAGTAATTCTTCCGATAATCAAGAAAATGCCCAACTGGCAG
AAAAATATTAGATTAATCTTTATTTATAAGGAATTGTGGCATTATAAAAC
ACCTCTCTGAATGATTTGGGATCTCGTTGATCGTATAAGCTTCCGAGGGG
ATGGGGGAGGCAGTATATTAGGTCTGATTCGATTCCAAGATAGTTACAAC
TCGACAGCTCCAAGAGTAGAATGTATGTATTATGTATGTATTTATGTATT
TATATTTATTAAATTGCACATAACTGCGCAATCCGGTTCTGTCATCCTAT
TAACCCTTCTGGGGCCGGGCGATTCCGACAGTGCGATCATGAATAGCCCG
GGTTCCAAAACTGAACCAGCAGTAATTCTTCCGATAATCAAGAAAATGCC
CAACTGGCAGAAAAATATTAGATTAATCTTTATTTATAAGGAATTGTGGC
ATTATAAAACACCTCTCTGA
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