mRNA_H-elongata_contig106717.551.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106717.551.1
Unique NamemRNA_H-elongata_contig106717.551.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig106717.551.1 vs. uniprot
Match: D8LG61_ECTSI (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG61_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.100e-50
Identity = 79/111 (71.17%), Postives = 96/111 (86.49%), Query Frame = 1
Query:    1 RIPLQVAGDGNISEGNLDGESRYRVRKVFFEHDPRNRTLVLHHPDCLDHRPKSDQDWECPDRVMAILELLGKPRVFENFELEMTTDFNAVNTEALTRAHSGAYIKFVSGLG 333
            R PLQVAGDGN SEGN D ESRY+VR+ FF  +PRNRTLVLHHPDCL+H+PKSD+DWECP+RV++I++LL KPR FE+ ELE+TTDF+AVNTE+L R H+G YIKFV  +G
Sbjct:   36 RNPLQVAGDGNASEGNPDMESRYKVRREFFRQEPRNRTLVLHHPDCLEHQPKSDRDWECPERVVSIVDLLVKPRAFEHHELEVTTDFSAVNTESLMRVHTGPYIKFVDSMG 146          
BLAST of mRNA_H-elongata_contig106717.551.1 vs. uniprot
Match: D8LG60_ECTSI (Histone deactylase of possible bacterial origin with ankyrin repeats at the N-terminus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG60_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 2.460e-49
Identity = 79/111 (71.17%), Postives = 96/111 (86.49%), Query Frame = 1
Query:    1 RIPLQVAGDGNISEGNLDGESRYRVRKVFFEHDPRNRTLVLHHPDCLDHRPKSDQDWECPDRVMAILELLGKPRVFENFELEMTTDFNAVNTEALTRAHSGAYIKFVSGLG 333
            R PLQVAGDGN SEGN D ESRY+VR+ FF  +PRNRTLVLHHPDCL+H+PKSD+DWECP+RV++I++LL KPR FE+ ELE+TTDF+AVNTE+L R H+G YIKFV  +G
Sbjct: 1660 RNPLQVAGDGNASEGNPDMESRYKVRREFFRQEPRNRTLVLHHPDCLEHQPKSDRDWECPERVVSIVDLLVKPRAFEHHELEVTTDFSAVNTESLMRVHTGPYIKFVDSMG 1770          
BLAST of mRNA_H-elongata_contig106717.551.1 vs. uniprot
Match: A0A7S4NGU7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGU7_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.560e-19
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 1
Query:   58 ESRYRVRKVFFEHDPRNRTLVLHHPDCLDHRPKSDQDWECPDRVMAILELLGKPRVFENF----------ELEMTTDFNAVNTEALTRAHSGAYIKFVSGL 330
            + R + R  FF +  ++RTLVLHHPDCLDH PKS  DWECPDRV  I++ + K    +N           E+ ++TDF+    E L+R HS  Y+ FV+ L
Sbjct:   97 KERQQSRANFFSYSSQSRTLVLHHPDCLDHIPKSSHDWECPDRVQCIMDRIIKETGQDNLSDDDTNIQPNEVVISTDFDRAPLELLSRIHSATYLAFVNDL 197          
BLAST of mRNA_H-elongata_contig106717.551.1 vs. uniprot
Match: A0A7S4NGC4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGC4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.280e-18
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 1
Query:   58 ESRYRVRKVFFEHDPRNRTLVLHHPDCLDHRPKSDQDWECPDRVMAILELLGKPRVFENF----------ELEMTTDFNAVNTEALTRAHSGAYIKFVSGL 330
            + R + R  FF +  ++RTLVLHHPDCLDH PKS  DWECPDRV  I++ + K    +N           E+ ++TDF+    E L+R HS  Y+ FV+ L
Sbjct:  445 KERQQSRANFFSYSSQSRTLVLHHPDCLDHIPKSSHDWECPDRVQCIMDRIIKETGQDNLSDDDTNIQPNEVVISTDFDRAPLELLSRIHSATYLAFVNDL 545          
BLAST of mRNA_H-elongata_contig106717.551.1 vs. uniprot
Match: A0A7S3Q3P5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q3P5_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 8.700e-18
Identity = 40/94 (42.55%), Postives = 62/94 (65.96%), Query Frame = 1
Query:   58 ESRYRVRKVFFEHDPRNRTLVLHHPDCLDHRPKSDQDWECPDRVMAILELLGKP---RVFENFELEMTTDFNAVNTEALTRAHSGAYIKFVSGL 330
            + + + R  FF H P++RTLVLHH +CLDH PKS+ DWE PDR+ +I+  L +     + EN E++++ +F+  + E L+R HS  Y+ FV+ L
Sbjct:  592 QEQRQCRANFFSHSPQSRTLVLHHSECLDHLPKSETDWEAPDRISSIINALSRNDEISIREN-EIQVSQEFDRASLEFLSRVHSAEYLTFVNNL 684          
BLAST of mRNA_H-elongata_contig106717.551.1 vs. uniprot
Match: A0A7S4RBR2_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RBR2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 8.230e-15
Identity = 40/98 (40.82%), Postives = 60/98 (61.22%), Query Frame = 1
Query:   70 RVRKV-FFEHDPRNRTLVLHHPDCLDHRPKSDQDWECPDRVMAILELLGKPR-------VFENF---ELEMTTDFNAVNTEALTRAHSGAYIKFVSGL 330
            R+ +V F    P++RTL+LHHP+CLDH PKS+ DWE PDRV +I+  +   +       VF+     E+ ++T+F+    E L+R HS  Y+ FV+ L
Sbjct:  869 RLSRVNFLRFSPQSRTLILHHPECLDHIPKSEHDWEVPDRVKSIMNRIQDGQKNDKDSNVFDQISPHEVTISTEFDRATLELLSRVHSADYLAFVNDL 966          
BLAST of mRNA_H-elongata_contig106717.551.1 vs. uniprot
Match: A0A7S4EFP6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EFP6_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.040e-14
Identity = 44/138 (31.88%), Postives = 71/138 (51.45%), Query Frame = 1
Query:    7 PLQVAGDGNISEGN--------------LDGESRYRVRKV----------FFEHDPRNRTLVLHHPDCLDHRPKSDQDWECPDRVMAILELLGKPRVFENF------ELEMTTDFNAVNTEALTRAHSGAYIKFVSGL 330
            P+ VA DG   E +              L  E R ++R+            FE   ++RTLVL+HP+CL+H PK++ DWE PDR+ +I+E +   R+  +       E++++ +F   N + L+R HS  Y+ FV+ L
Sbjct:  684 PIDVAADGFFDESDPVMEIRALDEKKKKLKKEQRQKLREAALERREARANLFECSSQSRTLVLYHPECLEHIPKAEGDWENPDRINSIMERIKGIRIGSDIPSIYQREIQISKEFERANLDLLSRVHSTEYLNFVNEL 821          
BLAST of mRNA_H-elongata_contig106717.551.1 vs. uniprot
Match: A0A6S8HTR1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8HTR1_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.070e-14
Identity = 40/93 (43.01%), Postives = 52/93 (55.91%), Query Frame = 1
Query:   76 RKVFFEHDPRNRTLVLHHPDCLDHRPKSDQDWECPDRVMAILELLG--------KPRVFENFELEMTTDFNAVNTEALTRAHSGAYIKFVSGL 330
            RK   E    +RTLVLHHP+CL+H PKS  DWE PDRV+ ILE L         +P V  + E+ ++T+F     + L R H   Y+ FV  L
Sbjct:  641 RKNLLERSVHSRTLVLHHPECLEHVPKSSSDWEAPDRVITILEHLASSMEEGCARPAVHAH-EVTLSTEFERAKLDLLKRVHGAEYLSFVHDL 732          
BLAST of mRNA_H-elongata_contig106717.551.1 vs. uniprot
Match: A0A7S4AC53_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AC53_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.080e-14
Identity = 44/138 (31.88%), Postives = 71/138 (51.45%), Query Frame = 1
Query:    7 PLQVAGDGNISEGN--------------LDGESRYRVRKV----------FFEHDPRNRTLVLHHPDCLDHRPKSDQDWECPDRVMAILELLGKPRVFENF------ELEMTTDFNAVNTEALTRAHSGAYIKFVSGL 330
            P+ VA DG   E +              L  E R ++R+            FE   ++RTLVL+HP+CL+H PK++ DWE PDR+ +I+E +   R+  +       E++++ +F   N + L+R HS  Y+ FV+ L
Sbjct:  684 PIDVAADGFFDESDPVMEIRALDEKKKKLKKEQRQKLREAALERREARANLFECSSQSRTLVLYHPECLEHIPKAEGDWENPDRINSIMERIKGIRIGSDIPSIYQREIQISKEFERANLDLLSRVHSTEYLNFVNEL 821          
BLAST of mRNA_H-elongata_contig106717.551.1 vs. uniprot
Match: A0A448YY97_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YY97_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.010e-12
Identity = 42/139 (30.22%), Postives = 70/139 (50.36%), Query Frame = 1
Query:    7 PLQVAGDGNISEGN--------------LDGESRYRVRKV----------FFEHDPRNRTLVLHHPDCLDHRPKSDQDWECPDRVMAILELLGK-------PRVFENFELEMTTDFNAVNTEALTRAHSGAYIKFVSGL 330
            P+ VA DG + E +              L  E R ++R+            FE   ++RTLVL+HP+CL+H PK   DWE PDR+ +I+E + +       P +++  E++++ +F     + L+R HS  Y+  V+ L
Sbjct:  700 PIDVAADGFLDEPDPVMXIRALDEKKKKLKKEQRRKLREAAVERRESRANLFEISAQSRTLVLYHPECLEHIPKGKGDWENPDRINSIMERIQEGNPGSETPSIYQR-EIQISKEFERAKLDLLSRVHSTEYLNMVNEL 837          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106717.551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LG61_ECTSI1.100e-5071.17Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
D8LG60_ECTSI2.460e-4971.17Histone deactylase of possible bacterial origin wi... [more]
A0A7S4NGU7_9STRA1.560e-1943.56Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S4NGC4_9STRA1.280e-1843.56Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S3Q3P5_9STRA8.700e-1842.55Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S4RBR2_9STRA8.230e-1540.82Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
A0A7S4EFP6_9STRA2.040e-1431.88Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A6S8HTR1_9STRA2.070e-1443.01Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S4AC53_9STRA2.080e-1431.88Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A448YY97_9STRA3.010e-1230.22Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106717contigH-elongata_contig106717:434..1534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.1
Seed ortholog evalue1.1e-42
Seed eggNOG ortholog2880.D8LG60
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,COG0666@1,KOG0724@1,KOG0724@2759,KOG1343@2759,KOG4177@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929597.2109017-CDS-H-elongata_contig106717:433..5661622929597.2109017-CDS-H-elongata_contig106717:433..566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106717 434..566 +
1691679085.0279922-CDS-H-elongata_contig106717:433..5661691679085.0279922-CDS-H-elongata_contig106717:433..566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106717 434..566 +
1622929597.2235386-CDS-H-elongata_contig106717:1334..15341622929597.2235386-CDS-H-elongata_contig106717:1334..1534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106717 1335..1534 +
1691679085.0399199-CDS-H-elongata_contig106717:1334..15341691679085.0399199-CDS-H-elongata_contig106717:1334..1534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106717 1335..1534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106717.551.1prot_H-elongata_contig106717.551.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106717 434..1534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106717.551.1

>prot_H-elongata_contig106717.551.1 ID=prot_H-elongata_contig106717.551.1|Name=mRNA_H-elongata_contig106717.551.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
RIPLQVAGDGNISEGNLDGESRYRVRKVFFEHDPRNRTLVLHHPDCLDHR
PKSDQDWECPDRVMAILELLGKPRVFENFELEMTTDFNAVNTEALTRAHS
GAYIKFVSGLG
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mRNA from alignment at H-elongata_contig106717:434..1534+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106717.551.1 ID=mRNA_H-elongata_contig106717.551.1|Name=mRNA_H-elongata_contig106717.551.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1101bp|location=Sequence derived from alignment at H-elongata_contig106717:434..1534+ (Himanthalia elongata Himel1 dioecious)
CGTATTCCTCTCCAAGTGGCCGGAGACGGCAACATCTCGGAGGGAAACCT AGACGGCGAATCGAGGTACAGGGTGCGGAAGGTGTTTTTCGAGCACGACC CTCGCAACCGTACGCTGGTCCTACACCACCCCGGTGAGAGAGAGAGAGAG AGAGAAAGAGAGGGAAAGAAAGCTGCACACCTCGTTTCCTGTACCTTGTA CCTTCTTTGTACCTTGTACTTTGTAATATACCTATTTCTTGTGGGTTGGG GAGTGAGAAAGAGAGAAATAGAGGTATAGTTCTTGGAGCAGGACCGTCAT CTTTCACCACGTCGGCGGGCGATCGAACGATTGCCCTGGCGAGAGAAAAA AAAACGATACCTTATTTTGTACCTTATTTTTGAACCATGTTTTTAGTGGG GTTGTGTCGATTCTCGTCGTCGCGGCCATGATAATTCCCTAATATTTTTG AGCCCCCTCCCCCCCCTCCCCGCCCCCCTCCCTTCCAATGCACACACACA GTAACCCTGGGTGGGTTACATGCAGAATATAATGAGTAGGTTACAGGGCC GGATTGCGCGGTTATGTGTTATTTAATACATACACACAAACTGTAGTGAA AATGATTGATCATCCCCCAATTGGGAGAACCGATGCGTGTAGACTAGAAC GACTAGCATGACAGGGCATCACCGGATTACGTGGCTGGCTATGTGCAATT TAATCAATACATACACATACACACACGCTACCAGAACGCCTCTTCATAAA TTGTACGGTAGTTATATATTGGTCCCCTGGACTACACCTCTGGTGCTAAG AAGGCGTGGATGTTCGGAGGGCTCTTATGAGTTCATATATGTTTTAAAAT ATAAACAAGCAAATTAACCAACCAATCAACCAACACGCGACCCCTTCTCA GACTGCTTGGATCACCGTCCGAAGTCAGATCAAGACTGGGAGTGTCCGGA TCGGGTGATGGCCATCCTAGAGCTACTGGGGAAGCCTCGCGTGTTCGAAA ACTTCGAGTTGGAGATGACGACGGACTTCAACGCGGTAAACACGGAGGCT CTCACGAGAGCCCACTCCGGGGCGTACATCAAGTTCGTCAGCGGGCTCGG T
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Coding sequence (CDS) from alignment at H-elongata_contig106717:434..1534+

>mRNA_H-elongata_contig106717.551.1 ID=mRNA_H-elongata_contig106717.551.1|Name=mRNA_H-elongata_contig106717.551.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig106717:434..1534+ (Himanthalia elongata Himel1 dioecious)
CGTATTCCTCTCCAAGTGGCCGGAGACGGCAACATCTCGGAGGGAAACCT
AGACGGCGAATCGAGGTACAGGGTGCGGAAGGTGTTTTTCGAGCACGACC
CTCGCAACCGTACGCTGGTCCTACACCACCCCGCGTATTCCTCTCCAAGT
GGCCGGAGACGGCAACATCTCGGAGGGAAACCTAGACGGCGAATCGAGGT
ACAGGGTGCGGAAGGTGTTTTTCGAGCACGACCCTCGCAACCGTACGCTG
GTCCTACACCACCCCGACTGCTTGGATCACCGTCCGAAGTCAGATCAAGA
CTGGGAGTGTCCGGATCGGGTGATGGCCATCCTAGAGCTACTGGGGAAGC
CTCGCGTGTTCGAAAACTTCGAGTTGGAGATGACGACGGACTTCAACGCG
GTAAACACGGAGGCTCTCACGAGAGCCCACTCCGGGGCGTACATCAAGTT
CGTCAGCGGGCTCGGTACTGCTTGGATCACCGTCCGAAGTCAGATCAAGA
CTGGGAGTGTCCGGATCGGGTGATGGCCATCCTAGAGCTACTGGGGAAGC
CTCGCGTGTTCGAAAACTTCGAGTTGGAGATGACGACGGACTTCAACGCG
GTAAACACGGAGGCTCTCACGAGAGCCCACTCCGGGGCGTACATCAAGTT
CGTCAGCGGGCTCGGT
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