mRNA_H-elongata_contig1067.548.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Match: D8LPP6_ECTSI (AP complex subunit sigma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP6_ECTSI) HSP 1 Score: 300 bits (768), Expect = 7.220e-103 Identity = 149/157 (94.90%), Postives = 153/157 (97.45%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDDNELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVAH-GDSGFGSKST 468
MIKFVLMVNKMGQTRVS+YYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDD+NELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMD +H GDS FGSKS+
Sbjct: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVFGSKSS 157
BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Match: A0A835Z9B6_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B6_9STRA) HSP 1 Score: 275 bits (702), Expect = 8.080e-93 Identity = 136/156 (87.18%), Postives = 148/156 (94.87%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDDNELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKV-AHGDSGFGSKS 465
MIKFVLMVNKMGQTRVS+YY+W+PIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGV SD++NELG+LEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMV+NG +CE NR+N+LKPL LMDKV A+ D+GFGSKS
Sbjct: 1 MIKFVLMVNKMGQTRVSSYYEWLPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVD-SSDEENELGMLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVMNGCVCEANRDNILKPLQLMDKVSANDDAGFGSKS 155
BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Match: A0A7S2UUI5_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUI5_9STRA) HSP 1 Score: 235 bits (600), Expect = 2.470e-77 Identity = 110/154 (71.43%), Postives = 135/154 (87.66%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDDNELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVAHGDSGFGSK 462
MIKF+LMVNK GQTR+S+Y++WM IPERVALE+E++R+C SR+E QCSF E+RGY++IYRRYASLFFIVGVG +D++NELGVLEFIH LVETLDKYF+SVCELDIMFN+EK HFILDEMV+NGYI E NR N+LKP+ MDK+A+ + S+
Sbjct: 1 MIKFILMVNKQGQTRLSSYFEWMTIPERVALESEIIRKCLSRAEYQCSFLEYRGYRVIYRRYASLFFIVGVG--ADEENELGVLEFIHSLVETLDKYFESVCELDIMFNMEKAHFILDEMVMNGYIMETNRTNILKPIAQMDKMANSEDSIFSR 152
BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Match: F0Y567_AURAN (AP complex subunit sigma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y567_AURAN) HSP 1 Score: 227 bits (578), Expect = 5.560e-74 Identity = 105/144 (72.92%), Postives = 127/144 (88.19%), Query Frame = 1
Query: 4 IKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDDNELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVA 435
I+F+LMVNK GQTR+STYY+W+P+PERVALE+E++R+C SRSE QCSF E+RGYK++YRRYASLFFIVG + D +NELG+LEFIH LVETLDKYF+SVCELDIMFNLEK HFILDEMV+NG I E N+ NVLKP+ LM+K +
Sbjct: 3 IRFILMVNKQGQTRLSTYYEWLPMPERVALESEIIRKCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGC--EQDSENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVMNGCIVETNKANVLKPIALMEKAS 144
BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Match: A0A7S3ZZG7_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZG7_9STRA) HSP 1 Score: 225 bits (573), Expect = 3.100e-73 Identity = 106/144 (73.61%), Postives = 126/144 (87.50%), Query Frame = 1
Query: 4 IKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDDNELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVA 435
IKFVLMVNK GQTR+STYY+W+ +PERVALEAE++R C SRSE QCSF E+RGYK++YRRYASLFFIVGV D D +NELG+LEFIH LVETLDKYF+SVCELDIMFNLEK HFILDEMV++G + E N+ N+LKP+ LM+K +
Sbjct: 3 IKFVLMVNKQGQTRLSTYYEWLSMPERVALEAEIIRTCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGV--DQDGENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVVDGCVVETNKVNILKPIALMEKAS 144
BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Match: A0A7S2FA09_9STRA (AP complex subunit sigma n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FA09_9STRA) HSP 1 Score: 222 bits (566), Expect = 7.250e-72 Identity = 110/154 (71.43%), Postives = 131/154 (85.06%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDDNELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVAHGDSGFGSK 462
M+KFVLMVNK GQTR+S+YY+W+P+ ER ALEAE++R+C SR+E QCSF E+RGYK+IYRRYASLFFIVG+ D+ NELGVLEFIH LVETLDKYF+SVCELDIMFNLEK HFIL+EMV NG I E N+ N+LKP++LM+K A DS F SK
Sbjct: 20 MLKFVLMVNKQGQTRLSSYYEWIPMQERCALEAEIIRKCLSRNETQCSFVEYRGYKVIYRRYASLFFIVGM---KDNMNELGVLEFIHALVETLDKYFESVCELDIMFNLEKAHFILEEMVQNGCIFETNKANILKPIMLMEK-ASDDSVFSSK 169
BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Match: A0A7S3GXI4_9STRA (AP complex subunit sigma n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXI4_9STRA) HSP 1 Score: 221 bits (563), Expect = 1.070e-71 Identity = 102/154 (66.23%), Postives = 130/154 (84.42%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDDNELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVAHGDSGFGSK 462
MIKFVLMVNK GQTR+++Y+ W PI ERVALEAE++RRC SR+E QCSF E+RG+K++YRRYASLFF+V V D +++NEL +LEFIH LVET+DKYF+SVCELDIMF++EK H+I+DEMV+NG I E N+ N+LKPL LMDK+A + G S+
Sbjct: 1 MIKFVLMVNKQGQTRLASYFQWYPIQERVALEAEIIRRCLSRTEFQCSFIEYRGFKVVYRRYASLFFVVAV--DGEEENELAILEFIHSLVETMDKYFESVCELDIMFHIEKAHYIVDEMVVNGSIVENNKVNILKPLALMDKLASAEGGIFSR 152
BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Match: A0A2R5GZ26_9STRA (AP complex subunit sigma n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GZ26_9STRA) HSP 1 Score: 219 bits (559), Expect = 3.340e-71 Identity = 102/145 (70.34%), Postives = 126/145 (86.90%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDDNELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVA 435
MIKFVLMVNK GQTR+S+YY+W+ I ER ALEAE++R+C +R+E QCSF E RGYK++YRRYASLFFIVGV D D++NELG+LEFIHCLVETLDKYF +VCELDIMFNLEK HFIL+EMV NG++ E N+ NVLKP+ ++D ++
Sbjct: 1 MIKFVLMVNKQGQTRLSSYYEWLTIEERGALEAEIIRKCLARTENQCSFMENRGYKVVYRRYASLFFIVGV--DQDEENELGILEFIHCLVETLDKYFSNVCELDIMFNLEKAHFILNEMVQNGHVVEANKANVLKPITMLDSIS 143
BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Match: F0W0A7_9STRA (AP complex subunit sigma n=21 Tax=Oomycota TaxID=4762 RepID=F0W0A7_9STRA) HSP 1 Score: 216 bits (550), Expect = 7.840e-70 Identity = 105/143 (73.43%), Postives = 125/143 (87.41%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDDNELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDK 429
MIKFVLMVNK GQTR++ YYD++ I ERVALEAE++R+C SR+E QCSF E+RGYK+IYRRYASLFFIVGV D D +NELG+LEFIH LVET+DKYF+SVCELDIMFNLEK HFILDEMV+NG I E N+ ++LKP+ LM+K
Sbjct: 1 MIKFVLMVNKQGQTRLAQYYDFLSIQERVALEAEIIRKCLSRNENQCSFVEYRGYKVIYRRYASLFFIVGVQND-DSENELGILEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMVMNGSIVESNKVSILKPIHLMEK 142
BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Match: A0A7S1C3U2_9STRA (AP complex subunit sigma n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3U2_9STRA) HSP 1 Score: 215 bits (547), Expect = 2.320e-69 Identity = 101/143 (70.63%), Postives = 124/143 (86.71%), Query Frame = 1
Query: 4 IKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDDNELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKV 432
IKFVLMVNK GQTR++ Y DW+PI ERVALEAE++R+C SR+ELQCSF E+RGYK++YRRYASL+FIVGV DD+NEL +LEFIH LVETLDKYF++VCELDIMFNLEK HFIL+EM++NG I E N+ NVL+P+ L++K
Sbjct: 3 IKFVLMVNKQGQTRLAEYCDWLPIEERVALEAEIIRKCLSRNELQCSFMEYRGYKVVYRRYASLYFIVGV--KGDDENELSILEFIHALVETLDKYFENVCELDIMFNLEKAHFILNEMLMNGCIVETNKANVLRPIHLLEKA 143 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1067.548.1 >prot_H-elongata_contig1067.548.1 ID=prot_H-elongata_contig1067.548.1|Name=mRNA_H-elongata_contig1067.548.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp MIKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFFback to top mRNA from alignment at H-elongata_contig1067:6927..8001- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1067.548.1 ID=mRNA_H-elongata_contig1067.548.1|Name=mRNA_H-elongata_contig1067.548.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1075bp|location=Sequence derived from alignment at H-elongata_contig1067:6927..8001- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1067:6927..8001- >mRNA_H-elongata_contig1067.548.1 ID=mRNA_H-elongata_contig1067.548.1|Name=mRNA_H-elongata_contig1067.548.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig1067:6927..8001- (Himanthalia elongata Himel1 dioecious)back to top |