mRNA_H-elongata_contig106621.544.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106621.544.1
Unique NamemRNA_H-elongata_contig106621.544.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig106621.544.1 vs. uniprot
Match: A0A6H5KK26_9PHAE (SMC_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK26_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 1.210e-103
Identity = 168/217 (77.42%), Postives = 183/217 (84.33%), Query Frame = 1 
Query:    1 MHIKQVVISGFRSFRTQSEIEPFSPRHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQVLLHEGAGDHVHYAYVELIFDNTDGRLAQDGDEVKLRRHIGLKKDEFFLSGKRVTKQEV-----------------SSLLESAGFSKSNPYYIVQQGKVSTLTLMKDAERLNLLKEVAGTKVYEERRQESLQIMDGLKNKCEKIQAVITGMEVR 600
            MHIKQV +SGFRSFR+Q EIE FSPRHNVIVGRNGSGKSNFFDAIQF LLNQRFS+LRQEERQ+LLHEGAG  +  AYVE++FDN+DGRLAQDGDEV LRR+IG+KKDEFFL+ KRVTKQEV                 SSLLESAGFSK+NPYYIVQQGKVS LTLMKDAERLNLLKEVAGTKVYEERRQESL+IMD L NK EKIQ VI+ +E R
Sbjct:    1 MHIKQVSMSGFRSFRSQPEIESFSPRHNVIVGRNGSGKSNFFDAIQFALLNQRFSNLRQEERQLLLHEGAGAKLMSAYVEIVFDNSDGRLAQDGDEVVLRRNIGMKKDEFFLNLKRVTKQEVGGKEEEFDRGVIGALKVSSLLESAGFSKANPYYIVQQGKVSALTLMKDAERLNLLKEVAGTKVYEERRQESLKIMDELNNKFEKIQEVISFIEER 217
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BLAST of mRNA_H-elongata_contig106621.544.1 vs. uniprot
Match: D8LEU4_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU4_ECTSI)

HSP 1 Score: 320 bits (819), Expect = 4.210e-98
Identity = 168/200 (84.00%), Postives = 183/200 (91.50%), Query Frame = 1 
Query:    1 MHIKQVVISGFRSFRTQSEIEPFSPRHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQVLLHEGAGDHVHYAYVELIFDNTDGRLAQDGDEVKLRRHIGLKKDEFFLSGKRVTKQEVSSLLESAGFSKSNPYYIVQQGKVSTLTLMKDAERLNLLKEVAGTKVYEERRQESLQIMDGLKNKCEKIQAVITGMEVR 600
            MHIKQV +SGFRSFR+Q EIE FSPRHNVIVGRNGSGKSNFFDAIQF LLNQRFS+LRQEERQ+LLHEGAG  +  AYVE++FDN+DGRLAQDGDEV LRR+IG+KKDEFFL+ KRVTKQEVSSLLESAGFSK+NPYYIVQQGKVS LTLMKDAERLNLLKEVAGTKVYEERRQESL+IMD L NK EKIQ VI+ +E R
Sbjct:    1 MHIKQVSMSGFRSFRSQPEIESFSPRHNVIVGRNGSGKSNFFDAIQFALLNQRFSNLRQEERQLLLHEGAGAKLMSAYVEIVFDNSDGRLAQDGDEVVLRRNIGMKKDEFFLNLKRVTKQEVSSLLESAGFSKANPYYIVQQGKVSALTLMKDAERLNLLKEVAGTKVYEERRQESLKIMDELNNKFEKIQEVISFIEER 200
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BLAST of mRNA_H-elongata_contig106621.544.1 vs. uniprot
Match: A0A7S2F438_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F438_9STRA)

HSP 1 Score: 289 bits (739), Expect = 3.550e-92
Identity = 152/200 (76.00%), Postives = 173/200 (86.50%), Query Frame = 1 
Query:    1 MHIKQVVISGFRSFRTQSEIEPFSPRHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQVLLHEGAGDHVHYAYVELIFDNTDGRLAQDGDEVKLRRHIGLKKDEFFLSGKRVTKQEVSSLLESAGFSKSNPYYIVQQGKVSTLTLMKDAERLNLLKEVAGTKVYEERRQESLQIMDGLKNKCEKIQAVITGMEVR 600
            MHIKQ+ +SGFRSFR+QSEIEPFS +HNVIVGRNGSGKSNFFDAIQFVL++ RF++LRQEERQ LLHEGAG +V  AYVE+IFDN+D R+  DGDEV LRR IGLKKDEFFL+ KRVTK EVSSLLESAGFSKSNPYYIVQQGKV+ L LMKD ERL LLKEV GT+VYEERR+ESL+I+    +K EKIQ VI+ +E R
Sbjct:   21 MHIKQLTLSGFRSFRSQSEIEPFSSKHNVIVGRNGSGKSNFFDAIQFVLVSSRFNTLRQEERQHLLHEGAGANVMAAYVEIIFDNSDARMTVDGDEVVLRRTIGLKKDEFFLNRKRVTKSEVSSLLESAGFSKSNPYYIVQQGKVNALCLMKDQERLQLLKEVGGTRVYEERREESLKIISETTSKREKIQEVISYIEKR 220
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BLAST of mRNA_H-elongata_contig106621.544.1 vs. uniprot
Match: A0A836CH46_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH46_9STRA)

HSP 1 Score: 300 bits (768), Expect = 4.740e-91
Identity = 158/200 (79.00%), Postives = 175/200 (87.50%), Query Frame = 1 
Query:    1 MHIKQVVISGFRSFRTQSEIEPFSPRHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQVLLHEGAGDHVHYAYVELIFDNTDGRLAQDGDEVKLRRHIGLKKDEFFLSGKRVTKQEVSSLLESAGFSKSNPYYIVQQGKVSTLTLMKDAERLNLLKEVAGTKVYEERRQESLQIMDGLKNKCEKIQAVITGMEVR 600
            MHIKQV+ISGFRSFR+Q+E EPFSPRHNVIVGRNGSGKSNFFDAIQFVLLNQ+F +LRQEERQ LLHEGAG +V  A+VE++FDN+DGRL  DGDEV LRR IGLKKDEFFL+ KRVTK +VSSLLESAGFSKSNPYYIVQQGKVS LT+M D ERLNLLKEVAGTKVYEERR ESL+IM    +K  +IQ VIT +E R
Sbjct:    1 MHIKQVIISGFRSFRSQAETEPFSPRHNVIVGRNGSGKSNFFDAIQFVLLNQKFQNLRQEERQHLLHEGAGANVMSAFVEIVFDNSDGRLPVDGDEVVLRRTIGLKKDEFFLNRKRVTKADVSSLLESAGFSKSNPYYIVQQGKVSALTMMHDTERLNLLKEVAGTKVYEERRAESLKIMSDTADKRARIQEVITYIEDR 200
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BLAST of mRNA_H-elongata_contig106621.544.1 vs. uniprot
Match: A0A7R9U6Y3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6Y3_9STRA)

HSP 1 Score: 290 bits (742), Expect = 2.270e-89
Identity = 153/200 (76.50%), Postives = 172/200 (86.00%), Query Frame = 1 
Query:    1 MHIKQVVISGFRSFRTQSEIEPFSPRHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQVLLHEGAGDHVHYAYVELIFDNTDGRLAQDGDEVKLRRHIGLKKDEFFLSGKRVTKQEVSSLLESAGFSKSNPYYIVQQGKVSTLTLMKDAERLNLLKEVAGTKVYEERRQESLQIMDGLKNKCEKIQAVITGMEVR 600
            MHIKQ++ISGFRSFRTQ EIEPFSP HNVIVGRNGSGKSNFFDAIQFVLL  RF+SLRQEERQ LLHEGAG +V  A+VELIFDN+DGR+A DGDE+ LRR +GLKKDEFFL+ +RV K EV SLLESAGFSKSNPYYIV+QGKV+ L LMKD ERLNLLKEVAGTKVYEERR+ES +I+     K EKI+ VI+ +E R
Sbjct:    1 MHIKQIIISGFRSFRTQDEIEPFSPSHNVIVGRNGSGKSNFFDAIQFVLLAPRFASLRQEERQHLLHEGAGQNVMSAFVELIFDNSDGRIAVDGDEIVLRRTVGLKKDEFFLNRRRVRKGEVESLLESAGFSKSNPYYIVEQGKVNALCLMKDTERLNLLKEVAGTKVYEERREESNRIILETTEKREKIEEVISYIEER 200
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BLAST of mRNA_H-elongata_contig106621.544.1 vs. uniprot
Match: W7T3Q8_9STRA (Structural maintenance of chromosomes protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3Q8_9STRA)

HSP 1 Score: 289 bits (740), Expect = 3.020e-87
Identity = 153/200 (76.50%), Postives = 175/200 (87.50%), Query Frame = 1 
Query:    1 MHIKQVVISGFRSFRTQSEIEPFSPRHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQVLLHEGAGDHVHYAYVELIFDNTDGRLAQDGDEVKLRRHIGLKKDEFFLSGKRVTKQEVSSLLESAGFSKSNPYYIVQQGKVSTLTLMKDAERLNLLKEVAGTKVYEERRQESLQIMDGLKNKCEKIQAVITGMEVR 600
            MHIKQVV+SGFRSFR QSEIEPFS RHNVI+GRNGSGKSNFF AIQFVLL+Q+F  LRQEERQ LLHEGAG +V  A+VE+IFDN+DGR+  +GDEV LRR IG+KKDEFFL+ KRVTKQEVSSLLESAGFS+SNPYYIVQQGKV+ LTLM+D +RL+LLKEVAGTKVYEERR ESLQI+    +K EKIQ V++ +E R
Sbjct:    1 MHIKQVVLSGFRSFRHQSEIEPFSARHNVIIGRNGSGKSNFFAAIQFVLLSQKFMHLRQEERQQLLHEGAGANVMTAFVEVIFDNSDGRMTVEGDEVVLRRTIGVKKDEFFLNRKRVTKQEVSSLLESAGFSRSNPYYIVQQGKVNMLTLMRDDQRLDLLKEVAGTKVYEERRAESLQIIHETDHKREKIQEVVSYIEER 200
[Close]
BLAST of mRNA_H-elongata_contig106621.544.1 vs. uniprot
Match: A0A7S1U8S3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8S3_9STRA)

HSP 1 Score: 282 bits (722), Expect = 6.660e-85
Identity = 145/195 (74.36%), Postives = 168/195 (86.15%), Query Frame = 1 
Query:    1 MHIKQVVISGFRSFRTQSEIEPFSPRHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQVLLHEGAGDHVHYAYVELIFDNTDGRLAQDGDEVKLRRHIGLKKDEFFLSGKRVTKQEVSSLLESAGFSKSNPYYIVQQGKVSTLTLMKDAERLNLLKEVAGTKVYEERRQESLQIMDGLKNKCEKIQAVIT 585
            M I+Q+++SGFRSFR Q EIEPFSP HNV+VGRNGSGKSNFFDAIQFVLL  +F++LRQ+ERQ LLHEGAG +V  A+VE+IFDN DGR+A DGDE+ LRR +GLKKDEFFL+ +RVTK EV SLLESAGFSKSNPYYIVQQGKV+ L LMKD+ERLNLLKEVAGTKVYEERR ES +I++    K EKIQ VI+
Sbjct:    1 MRIQQIILSGFRSFRQQEEIEPFSPHHNVVVGRNGSGKSNFFDAIQFVLLAPKFANLRQDERQRLLHEGAGQNVMSAFVEIIFDNADGRIAVDGDEIVLRRTVGLKKDEFFLNRRRVTKGEVGSLLESAGFSKSNPYYIVQQGKVNALCLMKDSERLNLLKEVAGTKVYEERRAESTKIIEETNEKREKIQEVIS 195
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BLAST of mRNA_H-elongata_contig106621.544.1 vs. uniprot
Match: A0A2P4X866_9STRA (Chromosome segregation protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X866_9STRA)

HSP 1 Score: 254 bits (649), Expect = 5.270e-83
Identity = 128/200 (64.00%), Postives = 161/200 (80.50%), Query Frame = 1 
Query:    1 MHIKQVVISGFRSFRTQSEIEPFSPRHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQVLLHEGAGDHVHYAYVELIFDNTDGRLAQDGDEVKLRRHIGLKKDEFFLSGKRVTKQEVSSLLESAGFSKSNPYYIVQQGKVSTLTLMKDAERLNLLKEVAGTKVYEERRQESLQIMDGLKNKCEKIQAVITGMEVR 600
            MHIKQV++ GFRS++ Q  + PFS  HNV++GRNG+GKSNFFDAI+F LL  RF+SLR +ERQ LLHEG+G HV  AYVE+IFDN+DGRL  D  EV LRR IG+KKDEFFL+ K +TK +V  LLESAGFS+SNPYYIVQQGKV+ L +M++ ERL LLKEVAGTKVYE++R +SL+I+   + + EKIQ V++ +E R
Sbjct:    1 MHIKQVIVCGFRSYKDQVAVTPFSKEHNVVIGRNGTGKSNFFDAIRFGLLTSRFASLRPDERQALLHEGSGKHVMSAYVEIIFDNSDGRLPVDDVEVALRRTIGVKKDEFFLNRKHITKSDVVHLLESAGFSRSNPYYIVQQGKVNALAVMRERERLELLKEVAGTKVYEDQRVKSLKILQDTQTQREKIQEVVSYIETR 200
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BLAST of mRNA_H-elongata_contig106621.544.1 vs. uniprot
Match: A0A397B2P4_9STRA (SMC_N domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B2P4_9STRA)

HSP 1 Score: 248 bits (634), Expect = 1.000e-79
Identity = 130/200 (65.00%), Postives = 160/200 (80.00%), Query Frame = 1 
Query:    1 MHIKQVVISGFRSFRTQSEIEPFSPRHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQVLLHEGAGDHVHYAYVELIFDNTDGRLAQDGDEVKLRRHIGLKKDEFFLSGKRVTKQEVSSLLESAGFSKSNPYYIVQQGKVSTLTLMKDAERLNLLKEVAGTKVYEERRQESLQIMDGLKNKCEKIQAVITGMEVR 600
            MHIK VV+ GFRS++ ++ +E FS   NV++GRNG+GKSN FDAI+F LL +RFS+LRQEERQ LLHEGAG HV  AYVE+ F N DGRL  D ++V LRR IG+KKDEFFL+ K +TKQ+V+ LLESAGFS+SNPYYIVQQGKV+ L LMKD ERL LLK+VAGTKVYE+RR ESL+I+   + + EKI  VI+ +E R
Sbjct:    1 MHIKSVVVCGFRSYKEEAVVESFSKGQNVVIGRNGTGKSNMFDAIRFGLLTERFSNLRQEERQGLLHEGAGKHVMSAYVEITFCNRDGRLPLDTEDVVLRRTIGVKKDEFFLNRKHITKQDVNHLLESAGFSRSNPYYIVQQGKVNALALMKDKERLELLKDVAGTKVYEDRRVESLKIIQETQGRREKILEVISYIEGR 200
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BLAST of mRNA_H-elongata_contig106621.544.1 vs. uniprot
Match: A0A8K1FJ58_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJ58_PYTOL)

HSP 1 Score: 263 bits (672), Expect = 4.240e-78
Identity = 135/200 (67.50%), Postives = 163/200 (81.50%), Query Frame = 1 
Query:    1 MHIKQVVISGFRSFRTQSEIEPFSPRHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQVLLHEGAGDHVHYAYVELIFDNTDGRLAQDGDEVKLRRHIGLKKDEFFLSGKRVTKQEVSSLLESAGFSKSNPYYIVQQGKVSTLTLMKDAERLNLLKEVAGTKVYEERRQESLQIMDGLKNKCEKIQAVITGMEVR 600
            MHIK+VV+ GFRS++ Q   +PFS  HNV++GRNG+GKSNFFDAI+F LL  RF++LR EERQ LLHEG+G HV  A+VE++FDN DGRL  D +EV LRR IG+KKDEFFL+ K +TK +V  LLESAGFS+SNPYYIVQQGKV+ L LMK+ ERL LLKEVAGTKVYEERRQESL+IM   +++ EKIQ VIT +E R
Sbjct:    1 MHIKKVVVCGFRSYKDQVVTDPFSKEHNVVIGRNGTGKSNFFDAIRFCLLTSRFANLRPEERQALLHEGSGKHVMSAFVEIVFDNHDGRLPVDTEEVVLRRTIGVKKDEFFLNRKHITKSDVIHLLESAGFSRSNPYYIVQQGKVNALALMKEKERLELLKEVAGTKVYEERRQESLKIMQETQSRREKIQEVITYIEER 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106621.544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KK26_9PHAE1.210e-10377.42SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LEU4_ECTSI4.210e-9884.00Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S2F438_9STRA3.550e-9276.00Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
A0A836CH46_9STRA4.740e-9179.00Structural maintenance of chromosomes protein n=1 ... [more]
A0A7R9U6Y3_9STRA2.270e-8976.50Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
W7T3Q8_9STRA3.020e-8776.50Structural maintenance of chromosomes protein n=2 ... [more]
A0A7S1U8S3_9STRA6.660e-8574.36Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A2P4X866_9STRA5.270e-8364.00Chromosome segregation protein (Fragment) n=1 Tax=... [more]
A0A397B2P4_9STRA1.000e-7965.00SMC_N domain-containing protein (Fragment) n=1 Tax... [more]
A0A8K1FJ58_PYTOL4.240e-7867.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106621contigH-elongata_contig106621:524..2080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score324.7
Seed ortholog evalue3.1e-86
Seed eggNOG ortholog2880.D8LEU4
Preferred nameSMC3
KEGG koko:K06669
KEGG Pathwayko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000775,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000795,GO:0000798,GO:0000800,GO:0000819,GO:0000922,GO:0001736,GO:0001737,GO:0001738,GO:0002009,GO:0002165,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003774,GO:0003777,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005604,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005911,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007088,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007135,GO:0007164,GO:0007275,GO:0007346,GO:0007399,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008092,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008278,GO:0008544,GO:0009506,GO:0009507,GO:0009536,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009913,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010948,GO:0015630,GO:0015631,GO:0016043,GO:0016301,GO:0016310,GO:0016363,GO:0016462,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019827,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022008,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0030030,GO:0030054,GO:0030154,GO:0030182,GO:0030435,GO:0030437,GO:0030855,GO:0030892,GO:0030893,GO:0031012,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032505,GO:0032875,GO:0032876,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034085,GO:0034086,GO:0034087,GO:0034088,GO:0034293,GO:0034399,GO:0034502,GO:0034613,GO:0034641,GO:0034990,GO:0034991,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035315,GO:0035316,GO:0035317,GO:0035821,GO:0035825,GO:0036033,GO:0036211,GO:0040012,GO:0040017,GO:0042623,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0043934,GO:0043935,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044788,GO:0044789,GO:0044791,GO:0044794,GO:0044877,GO:0045132,GO:0045143,GO:0045144,GO:0045786,GO:0045934,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048468,GO:0048487,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048524,GO:0048563,GO:0048569,GO:0048646,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051171,GO:0051172,GO:0051177,GO:0051179,GO:0051276,GO:0051321,GO:0051493,GO:0051641,GO:0051702,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051817,GO:0051851,GO:0055044,GO:0060147,GO:0060236,GO:0060255,GO:0060429,GO:0060562,GO:0060966,GO:0060968,GO:0061775,GO:0061780,GO:0061982,GO:0061983,GO:0062022,GO:0062023,GO:0065007,GO:0065009,GO:0070013,GO:0070192,GO:0070193,GO:0070507,GO:0070601,GO:0070727,GO:0070840,GO:0071168,GO:0071704,GO:0071840,GO:0071921,GO:0071960,GO:0071962,GO:0072686,GO:0080090,GO:0090169,GO:0090224,GO:0090304,GO:0090329,GO:0097159,GO:0097431,GO:0098687,GO:0098727,GO:0098813,GO:0099086,GO:0120036,GO:0140013,GO:0140014,GO:0140096,GO:1900368,GO:1901360,GO:1901363,GO:1901564,GO:1901673,GO:1902115,GO:1902186,GO:1902188,GO:1903046,GO:1903047,GO:1903900,GO:1903902,GO:1990414,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.maintenance of mitotic sister chromatid cohesion, centromeric
EggNOG OGsCOG1196@1,KOG0964@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00535,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionsimilar to Structural maintenance of chromosome 3
Ec32 orthologEc-21_005610.1
Exons3
Model size609
Cds size609
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106621.544.1prot_H-elongata_contig106621.544.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106621 524..2080 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929596.5462193-CDS-H-elongata_contig106621:523..7991622929596.5462193-CDS-H-elongata_contig106621:523..799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106621 524..799 +
1691679084.5109887-CDS-H-elongata_contig106621:523..7991691679084.5109887-CDS-H-elongata_contig106621:523..799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106621 524..799 +
1622929596.5672097-CDS-H-elongata_contig106621:1204..14291622929596.5672097-CDS-H-elongata_contig106621:1204..1429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106621 1205..1429 +
1691679084.524596-CDS-H-elongata_contig106621:1204..14291691679084.524596-CDS-H-elongata_contig106621:1204..1429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106621 1205..1429 +
1622929596.579869-CDS-H-elongata_contig106621:1972..20801622929596.579869-CDS-H-elongata_contig106621:1972..2080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106621 1973..2080 +
1691679084.5341-CDS-H-elongata_contig106621:1972..20801691679084.5341-CDS-H-elongata_contig106621:1972..2080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106621 1973..2080 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106621.544.1

>prot_H-elongata_contig106621.544.1 ID=prot_H-elongata_contig106621.544.1|Name=mRNA_H-elongata_contig106621.544.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=203bp
MHIKQVVISGFRSFRTQSEIEPFSPRHNVIVGRNGSGKSNFFDAIQFVLL
NQRFSSLRQEERQVLLHEGAGDHVHYAYVELIFDNTDGRLAQDGDEVKLR
RHIGLKKDEFFLSGKRVTKQEVSSLLESAGFSKSNPYYIVQQGKVSTLTL
MKDAERLNLLKEVAGTKVYEERRQESLQIMDGLKNKCEKIQAVITGMEVR
ECE
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mRNA from alignment at H-elongata_contig106621:524..2080+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106621.544.1 ID=mRNA_H-elongata_contig106621.544.1|Name=mRNA_H-elongata_contig106621.544.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1557bp|location=Sequence derived from alignment at H-elongata_contig106621:524..2080+ (Himanthalia elongata Himel1 dioecious)
ATGCATATAAAACAGGTCGTGATATCGGGCTTCCGTAGCTTTCGAACTCA
ATCAGAGATCGAGCCCTTTAGTCCTAGGCACAACGTGATCGTGGGTAGAA
ATGGGTCAGGCAAGTCCAACTTCTTCGACGCCATCCAGTTTGTCCTGCTT
AACCAGAGATTTTCGAGCCTACGCCAAGAGGAACGACAGGTACTTCTCCA
CGAGGGTGCCGGAGATCACGTACACTACGCCTACGTCGAGCTCATCTTCG
ACAACACCGATGGCCGTTTGGCTCAGGTGCACTACTGTACGATTATTACA
TTTGTTCTTACTAAAGGTGTATATCTGAGTTGCTATGTACTAATTAAAAG
CATTGGTCGGATGATCGTCTACGGTGCTGCTCTTGTAAAATGCAAGTTTG
TGGTTACGATGAGACGGCAGATGTGCAACAAGAAACGAGCTTTTGCATCG
ATCCATCCCCGCTCTTGCGGCACACCTTGTTTTGCTCCATTCCCCCCGCG
TTTTCCACAGTTTAATCAGGTAATTACGGTAGCGGAGAATTTCGAACAGC
AGGATGTTTTTTGTTGTTGTTTTTTTAATGAACTCATTCAAACCCTCCGA
ACATCCAAACCTTATTTGAAGCCATTTATATTATACAGTATTTATATGGA
TGACATGGTATTCCCTGCACCGCAAATGAAGGATGGCGACGAGGTGAAGC
TGAGGCGTCACATCGGCCTGAAGAAGGACGAGTTCTTCCTCAGTGGGAAG
CGCGTCACGAAGCAAGAGGTGTCCAGCCTCCTCGAGAGCGCCGGCTTCTC
CAAGTCAAACCCGTACTACATCGTGCAGCAGGGGAAGGTCTCGACGCTGA
CTCTCATGAAAGACGCTGAGCGCCTTAATCTCTTGAAGGAAGTTGCGGGC
ACCAAGGTCGGTTTGTTTGTGACATGCATGGTGTCTAGTGTTGTAAAAAT
ACCAGGTGTTCTATATTTTTCAAAATCAATTACACCGATGATAATTACTT
CAAGTTTTGAATGACCTTGGGCAGCTGAAGTAATGCTGGACTCCGACGCA
CCATTGCTGTGTGCTCGTATTGCACACGATGCATGATAATGTTTACCCCC
AATAACAACGTGGCAAACGAAGCGCAGATGACTCTGCCCGAGACAGCAGT
AGGCAGGGTAAACCGACGATTGGTGCAACCGAATATTGGATACCGTATGC
GCTTGAATCTGACTCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTTTTT
TTTTCCCCCCCGCCTCCTAGCCCCTCCATNNNNNNNNNNCCCACTTTGTC
TCCCGTATCGCCTTTAATCTGCTCCCCCCCCCCCCCCCCGACCTCGATCT
TTATCTTTAACCTGCCGCTGGTACGTCGGTCTCCAATTAGCCCACACACT
GCTTTCCGGACACGGGAGAAATCTTTCTGGCGTTGCATACTCCCGACAGG
TGTACGAAGAGCGCCGACAGGAATCCTTGCAGATCATGGACGGCTTGAAA
AACAAATGCGAAAAGATCCAGGCGGTCATCACAGGCATGGAGGTGCGCGA
ATGCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig106621:524..2080+

>mRNA_H-elongata_contig106621.544.1 ID=mRNA_H-elongata_contig106621.544.1|Name=mRNA_H-elongata_contig106621.544.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1218bp|location=Sequence derived from alignment at H-elongata_contig106621:524..2080+ (Himanthalia elongata Himel1 dioecious)
ATGCATATAAAACAGGTCGTGATATCGGGCTTCCGTAGCTTTCGAACTCA
ATCAGAGATCGAGCCCTTTAGTCCTAGGCACAACGTGATCGTGGGTAGAA
ATGGGTCAGGCAAGTCCAACTTCTTCGACGCCATCCAGTTTGTCCTGCTT
AACCAGAGATTTTCGAGCCTACGCCAAGAGGAACGACAGGTACTTCTCCA
CGAGGGTGCCGGAGATCACGTACACTACGCCTACGTCGAGCTCATCTTCG
ACAACACCGATGGCCGTTTGGCTCAGATGCATATAAAACAGGTCGTGATA
TCGGGCTTCCGTAGCTTTCGAACTCAATCAGAGATCGAGCCCTTTAGTCC
TAGGCACAACGTGATCGTGGGTAGAAATGGGTCAGGCAAGTCCAACTTCT
TCGACGCCATCCAGTTTGTCCTGCTTAACCAGAGATTTTCGAGCCTACGC
CAAGAGGAACGACAGGTACTTCTCCACGAGGGTGCCGGAGATCACGTACA
CTACGCCTACGTCGAGCTCATCTTCGACAACACCGATGGCCGTTTGGCTC
AGGATGGCGACGAGGTGAAGCTGAGGCGTCACATCGGCCTGAAGAAGGAC
GAGTTCTTCCTCAGTGGGAAGCGCGTCACGAAGCAAGAGGTGTCCAGCCT
CCTCGAGAGCGCCGGCTTCTCCAAGTCAAACCCGTACTACATCGTGCAGC
AGGGGAAGGTCTCGACGCTGACTCTCATGAAAGACGCTGAGCGCCTTAAT
CTCTTGAAGGAAGTTGCGGGCACCAAGGATGGCGACGAGGTGAAGCTGAG
GCGTCACATCGGCCTGAAGAAGGACGAGTTCTTCCTCAGTGGGAAGCGCG
TCACGAAGCAAGAGGTGTCCAGCCTCCTCGAGAGCGCCGGCTTCTCCAAG
TCAAACCCGTACTACATCGTGCAGCAGGGGAAGGTCTCGACGCTGACTCT
CATGAAAGACGCTGAGCGCCTTAATCTCTTGAAGGAAGTTGCGGGCACCA
AGGTGTACGAAGAGCGCCGACAGGAATCCTTGCAGATCATGGACGGCTTG
AAAAACAAATGCGAAAAGATCCAGGCGGTCATCACAGGCATGGAGGTGCG
CGAATGCGAGGTGTACGAAGAGCGCCGACAGGAATCCTTGCAGATCATGG
ACGGCTTGAAAAACAAATGCGAAAAGATCCAGGCGGTCATCACAGGCATG
GAGGTGCGCGAATGCGAG
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