mRNA_H-elongata_contig106512.534.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106512.534.1
Unique NamemRNA_H-elongata_contig106512.534.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig106512.534.1 vs. uniprot
Match: A0A6H5KDN4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDN4_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.450e-48
Identity = 84/97 (86.60%), Postives = 88/97 (90.72%), Query Frame = 1
Query:    7 DELGTFNLRIVFAKGRTGFQESKQFHWPEGSVVADRYEVCGYIGKAAFSTALECRDLRRRRGEDAVCLKVIKNNKDFFDQSLDEIKLLQLIKDGGDP 297
            +EL +F+LRIV+AKGRTGFQESK F WPEG VVA RYEVCGYIGKAAFSTALECRDLRR RG DAVCLKVIKNNKDFFDQSLDEIKLLQ IK GGDP
Sbjct: 1471 EELESFDLRIVYAKGRTGFQESKAFDWPEGCVVAGRYEVCGYIGKAAFSTALECRDLRRERGRDAVCLKVIKNNKDFFDQSLDEIKLLQRIKAGGDP 1567          
BLAST of mRNA_H-elongata_contig106512.534.1 vs. uniprot
Match: D8LPS1_ECTSI (Dual-specificity tyrosine-phosphorylation regulated kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS1_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 6.840e-48
Identity = 83/97 (85.57%), Postives = 87/97 (89.69%), Query Frame = 1
Query:    7 DELGTFNLRIVFAKGRTGFQESKQFHWPEGSVVADRYEVCGYIGKAAFSTALECRDLRRRRGEDAVCLKVIKNNKDFFDQSLDEIKLLQLIKDGGDP 297
            +EL +F+LRIV+AKGRTGFQESK F WPEG VVA RYEVCGYIGKAAFSTALECRDLRR RG DAVCLKVIKNNKDFFDQSLDEIKLL  IK GGDP
Sbjct: 1322 EELESFDLRIVYAKGRTGFQESKAFDWPEGCVVAGRYEVCGYIGKAAFSTALECRDLRRERGRDAVCLKVIKNNKDFFDQSLDEIKLLHRIKAGGDP 1418          
BLAST of mRNA_H-elongata_contig106512.534.1 vs. uniprot
Match: A0A482S0S0_9ARCH (Protein kinase domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S0S0_9ARCH)

HSP 1 Score: 117 bits (293), Expect = 1.830e-30
Identity = 58/94 (61.70%), Postives = 69/94 (73.40%), Query Frame = 1
Query:   22 FNLRIVFAKGRTGFQESKQFHWPEGSVVADRYEVCGYIGKAAFSTALECRDLRRRR--GEDAVCLKVIKNNKDFFDQSLDEIKLLQLIKDGGDP 297
            FNL+++F   RTGF++SK F   +G V+A RYEV   +G AAFSTAL+C DL      G++ VCLKVIKNNKDFFDQSLDEIKLLQ I   GDP
Sbjct:   32 FNLKVIFEPYRTGFEDSKDFKHSKGLVIAGRYEVADVLGSAAFSTALQCTDLAAEADSGQEWVCLKVIKNNKDFFDQSLDEIKLLQYINSKGDP 125          
BLAST of mRNA_H-elongata_contig106512.534.1 vs. uniprot
Match: A0A835ZC55_9STRA (Kinase domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC55_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.590e-26
Identity = 54/106 (50.94%), Postives = 73/106 (68.87%), Query Frame = 1
Query:    7 DELGTFNLRIVFAKGRTGFQESKQFHWPEGSVVADRYEVCGYIGKAAFSTALECRDLRRRRGEDAVCLKVIKNNKDFFDQSLDEIKLLQLIKDGGDPVRAPWLQTY 324
            ++L +F LR+VFA+GRTGFQ +++ H P  SV+A RY+VC +I  A  S AL C DL    G+  VCLKV+KN+KD FDQSLDEI+LL+ +   GD  R  +L  +
Sbjct:    4 EQLDSFALRVVFARGRTGFQATRKLHAPVNSVIAGRYQVCRHIDSAVSSDALHCVDLHE--GDRPVCLKVVKNDKDLFDQSLDEIQLLRYMGARGDAERHHFLAMH 107          
BLAST of mRNA_H-elongata_contig106512.534.1 vs. uniprot
Match: A0A7S2IXG6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2IXG6_9DINO)

HSP 1 Score: 104 bits (260), Expect = 6.080e-26
Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   19 TFNLRIVFAKGRTGFQESKQFHWPEGSVVADRYEVCGYIGKAAFSTALECRDLRRRRGEDAVCLKVIKNNKDFFDQSLDEIKLLQLIKDGGDPVRAPWLQTY 324
            +F LR+VF + +TGF+ESK+F     +VVA RY++  Y+G AAFS A++C D+ + R    VC+K+IKN+KDFFDQSLDEIKLL+ I   GD      L+ Y
Sbjct:   15 SFGLRVVFERDKTGFEESKEFPIRINTVVAARYQIVEYLGSAAFSRAVQCLDIDKNR---MVCMKIIKNDKDFFDQSLDEIKLLKYINVNGDVDENCVLRLY 113          
BLAST of mRNA_H-elongata_contig106512.534.1 vs. uniprot
Match: A0A7J7G1J3_CAMSI (Protein kinase domain-containing protein n=1 Tax=Camellia sinensis TaxID=4442 RepID=A0A7J7G1J3_CAMSI)

HSP 1 Score: 110 bits (274), Expect = 8.600e-26
Identity = 60/108 (55.56%), Postives = 71/108 (65.74%), Query Frame = 1
Query:    7 DELGTFNLRIVFAKGRTGFQESKQFHWPEGSVVADRYEVCGYIGKAAFSTALECRDLRRRRGEDAVCLKVIKNNKDFFDQSLDEIKLLQLIK--DGGDPVRAPWLQTY 324
            +E  TFNL+IV  K RTGF+E K FH    SV+A RY V  Y+G AAFS A++  DL    G D VC+K+IKNNKDFFDQSLDEIKLL+L+   D GD      L  Y
Sbjct:  472 EEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHT--GMD-VCVKIIKNNKDFFDQSLDEIKLLKLVNKHDPGDKYHILRLYDY 576          
BLAST of mRNA_H-elongata_contig106512.534.1 vs. uniprot
Match: UPI00053C354C (uncharacterized protein LOC104812183 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C354C)

HSP 1 Score: 110 bits (274), Expect = 8.770e-26
Identity = 60/110 (54.55%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    1 APDELGTFNLRIVFAKGRTGFQESKQFHWPEGSVVADRYEVCGYIGKAAFSTALECRDLRRRRGEDAVCLKVIKNNKDFFDQSLDEIKLLQLIK--DGGDPVRAPWLQTY 324
            A +E  TFNL+IV  K RTGF+E K FH    SV+A RY V  Y+G AAFS A++  DL+   G D VC+K+IKNNKDFFDQSLDEIKLL+ +   D GD      L  Y
Sbjct:  798 AQEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLQT--GMD-VCIKIIKNNKDFFDQSLDEIKLLKYVNKHDPGDKYHILRLYDY 904          
BLAST of mRNA_H-elongata_contig106512.534.1 vs. uniprot
Match: A0A4S4E2H2_CAMSI (Protein kinase domain-containing protein n=2 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4E2H2_CAMSI)

HSP 1 Score: 110 bits (274), Expect = 8.790e-26
Identity = 60/108 (55.56%), Postives = 71/108 (65.74%), Query Frame = 1
Query:    7 DELGTFNLRIVFAKGRTGFQESKQFHWPEGSVVADRYEVCGYIGKAAFSTALECRDLRRRRGEDAVCLKVIKNNKDFFDQSLDEIKLLQLIK--DGGDPVRAPWLQTY 324
            +E  TFNL+IV  K RTGF+E K FH    SV+A RY V  Y+G AAFS A++  DL    G D VC+K+IKNNKDFFDQSLDEIKLL+L+   D GD      L  Y
Sbjct:  840 EEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHT--GMD-VCVKIIKNNKDFFDQSLDEIKLLKLVNKHDPGDKYHILRLYDY 944          
BLAST of mRNA_H-elongata_contig106512.534.1 vs. uniprot
Match: A0A1D6GJ02_MAIZE (Protein kinase superfamily protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6GJ02_MAIZE)

HSP 1 Score: 108 bits (269), Expect = 1.090e-25
Identity = 59/108 (54.63%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    7 DELGTFNLRIVFAKGRTGFQESKQFHWPEGSVVADRYEVCGYIGKAAFSTALECRDLRRRRGEDAVCLKVIKNNKDFFDQSLDEIKLLQLIK--DGGDPVRAPWLQTY 324
            +E  TFNL+IV  K RTGF+E K FH    SV+A RY V  Y+G AAFS A++  DL    G D VC+K+IKNNKDFFDQSLDEIKLL+ +   D GD      L  Y
Sbjct:  282 EEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVSEYLGSAAFSKAIQAHDLHT--GMD-VCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPGDKYHLLRLYDY 386          
BLAST of mRNA_H-elongata_contig106512.534.1 vs. uniprot
Match: A0A813LNL3_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LNL3_POLGL)

HSP 1 Score: 109 bits (273), Expect = 1.180e-25
Identity = 54/94 (57.45%), Postives = 69/94 (73.40%), Query Frame = 1
Query:   19 TFNLRIVFAKGRTGFQESKQFHWPEGSVVADRYEVCGYIGKAAFSTALECRDLRRRRGEDAVCLKVIKNNKDFFDQSLDEIKLLQLIKDGGDPV 300
            +FNLR+V  + RTGF+ESK+F     S+VA RY+V  Y+G AAFS A++C DL+  R    VC+K+IKNNKDFFDQSLDEIKLL+LI    D +
Sbjct:  499 SFNLRVVHERDRTGFEESKEFPIRINSIVAARYQVLEYLGSAAFSRAVQCLDLQTNR---MVCMKIIKNNKDFFDQSLDEIKLLRLINTNSDNI 589          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106512.534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDN4_9PHAE1.450e-4886.60Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LPS1_ECTSI6.840e-4885.57Dual-specificity tyrosine-phosphorylation regulate... [more]
A0A482S0S0_9ARCH1.830e-3061.70Protein kinase domain-containing protein n=1 Tax=a... [more]
A0A835ZC55_9STRA2.590e-2650.94Kinase domain protein n=1 Tax=Tribonema minus TaxI... [more]
A0A7S2IXG6_9DINO6.080e-2650.98Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7J7G1J3_CAMSI8.600e-2655.56Protein kinase domain-containing protein n=1 Tax=C... [more]
UPI00053C354C8.770e-2654.55uncharacterized protein LOC104812183 n=1 Tax=Taren... [more]
A0A4S4E2H2_CAMSI8.790e-2655.56Protein kinase domain-containing protein n=2 Tax=C... [more]
A0A1D6GJ02_MAIZE1.090e-2554.63Protein kinase superfamily protein n=1 Tax=Zea may... [more]
A0A813LNL3_POLGL1.180e-2557.45Hypothetical protein n=2 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106512contigH-elongata_contig106512:857..1985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score110.2
Seed ortholog evalue6.4e-22
Seed eggNOG ortholog28532.XP_010537517.1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.Its function is described as protein serine threonine kinase activity, protein kinase activity, kinase activity, ATP binding
EggNOG OGs37HW0@33090,3GDEN@35493,3HSN6@3699,KOG0667@1,KOG0667@2759
COG Functional cat.T
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929595.7684116-CDS-H-elongata_contig106512:856..10631622929595.7684116-CDS-H-elongata_contig106512:856..1063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106512 857..1063 -
1691679084.1372666-CDS-H-elongata_contig106512:856..10631691679084.1372666-CDS-H-elongata_contig106512:856..1063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106512 857..1063 -
1622929595.7834005-CDS-H-elongata_contig106512:1865..19851622929595.7834005-CDS-H-elongata_contig106512:1865..1985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106512 1866..1985 -
1691679084.1487646-CDS-H-elongata_contig106512:1865..19851691679084.1487646-CDS-H-elongata_contig106512:1865..1985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106512 1866..1985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106512.534.1prot_H-elongata_contig106512.534.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106512 857..1985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106512.534.1

>prot_H-elongata_contig106512.534.1 ID=prot_H-elongata_contig106512.534.1|Name=mRNA_H-elongata_contig106512.534.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
APDELGTFNLRIVFAKGRTGFQESKQFHWPEGSVVADRYEVCGYIGKAAF
STALECRDLRRRRGEDAVCLKVIKNNKDFFDQSLDEIKLLQLIKDGGDPV
RAPWLQTY*
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mRNA from alignment at H-elongata_contig106512:857..1985-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106512.534.1 ID=mRNA_H-elongata_contig106512.534.1|Name=mRNA_H-elongata_contig106512.534.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1129bp|location=Sequence derived from alignment at H-elongata_contig106512:857..1985- (Himanthalia elongata Himel1 dioecious)
GCGCCGGATGAGCTGGGCACGTTCAATCTGCGCATCGTGTTTGCCAAGGG TAGGACGGGTTTCCAAGAGAGCAAACAGTTCCACTGGCCGGAGGGTTCTG TCGTGGCCGACCGTTACGAGGTTCGTTTACTTTCACGGTCGTTACGCGCG CCTAGATGTACATAACGCGCCGTAGAAGTGTAATATCACATCGAGTTGTT TTGTCGGCGACAAATCTCGTTTCACCTTCAAAATAACCTCTTGTCTTGAG GGCAAGAGGGTCAAACAAAGAAATCGCGCCTACATGTGGAAAATGTGTTT ACAAGCGTTACAGTTACAATATTTTCGTGTTTTTCTCGGAAAGACGGCAC CCATCTATACTATGGCGTTTTGGTAAAAATAGAAAACTCCTCTGCTGTTT GCTTGATTTCGTGTTGCTCGGTCGACTTTGTTCGATTCCGGCGCGGGTGG TGACGTACGCGTAACAGAGGCCGTGCCAATTCGCCCCCATGGTCAGAATA TATCTGAACTACACTGATTTAATCCTTCCTCCTCGCCCCGGGTATGGGAA CGGGTGAAGAGGAGGGATATGAATGAGGACAGGAATGGAAAAGTGTATAA TGATGGAGGCGATGATTTGGACGGGGATGGGGATAAGCCTTCCCCCCCCC ACCCGTTCGCGCCTGCTACTGTGTACTGTCCACTTGATTTTTTTTTATTG TTATGCGATGCAAGTCCAGTTCTGCCCTCTCGTACTTCGTAAACGAGCGG CCCAAAATCTCACGCTATGTCATGTGTCTCTCACGCTATGTCATGTGTCT CTCACGCCATGTCATGTGTCTCTCACGCTATGTCACACGTTTCTCTCACG CTATGTCATGTGTCTCTCGCGCTCGCGCTCGCACTCTCGGGAAATTCTGT TCATCGTACTTTTGTCTTCCAGGTCTGCGGCTATATCGGCAAGGCCGCGT TCAGCACCGCCCTAGAATGTCGGGATCTTCGTCGGCGGCGTGGCGAGGAT GCCGTGTGCCTCAAGGTAATCAAGAACAACAAGGACTTCTTCGATCAGAG CTTGGACGAGATCAAGCTGCTGCAGCTCATCAAGGATGGAGGGGATCCGG TGCGAGCGCCGTGGTTACAAACATACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig106512:857..1985-

>mRNA_H-elongata_contig106512.534.1 ID=mRNA_H-elongata_contig106512.534.1|Name=mRNA_H-elongata_contig106512.534.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig106512:857..1985- (Himanthalia elongata Himel1 dioecious)
GCGCCGGATGAGCTGGGCACGTTCAATCTGCGCATCGTGTTTGCCAAGGG
TAGGACGGGTTTCCAAGAGAGCAAACAGTTCCACTGGCCGGAGGGTTCTG
TCGTGGCCGACCGTTACGAGGCGCCGGATGAGCTGGGCACGTTCAATCTG
CGCATCGTGTTTGCCAAGGGTAGGACGGGTTTCCAAGAGAGCAAACAGTT
CCACTGGCCGGAGGGTTCTGTCGTGGCCGACCGTTACGAGGTCTGCGGCT
ATATCGGCAAGGCCGCGTTCAGCACCGCCCTAGAATGTCGGGATCTTCGT
CGGCGGCGTGGCGAGGATGCCGTGTGCCTCAAGGTAATCAAGAACAACAA
GGACTTCTTCGATCAGAGCTTGGACGAGATCAAGCTGCTGCAGCTCATCA
AGGATGGAGGGGATCCGGTGCGAGCGCCGTGGTTACAAACATACTAAGTC
TGCGGCTATATCGGCAAGGCCGCGTTCAGCACCGCCCTAGAATGTCGGGA
TCTTCGTCGGCGGCGTGGCGAGGATGCCGTGTGCCTCAAGGTAATCAAGA
ACAACAAGGACTTCTTCGATCAGAGCTTGGACGAGATCAAGCTGCTGCAG
CTCATCAAGGATGGAGGGGATCCGGTGCGAGCGCCGTGGTTACAAACATA
CTAA
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