mRNA_H-elongata_contig106502.533.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106502.533.1
Unique NamemRNA_H-elongata_contig106502.533.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig106502.533.1 vs. uniprot
Match: D7FGU3_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGU3_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.300e-13
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   40 QDDAFFPQFRSFDWFCGHSWARGLLFSYDGKDQVS 144
            Q DA+FPQFRSFDWF GHSWARGLLF+YDGKDQ S
Sbjct:  533 QSDAYFPQFRSFDWFSGHSWARGLLFAYDGKDQES 567
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BLAST of mRNA_H-elongata_contig106502.533.1 vs. uniprot
Match: A0A6H5JFJ7_9PHAE (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ7_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.310e-13
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 RATTSNILHTVSLQDDAFFPQFRSFDWFCGHSWARGLLFSYDGKDQVS 144
            +A ++++    SL D A+FPQFRSFDWF GHSWARGLLF+YDGKDQ S
Sbjct:  341 QARSADMSRRFSLSD-AYFPQFRSFDWFSGHSWARGLLFAYDGKDQES 387
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BLAST of mRNA_H-elongata_contig106502.533.1 vs. uniprot
Match: D7FTA2_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA2_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 4.520e-13
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   40 QDDAFFPQFRSFDWFCGHSWARGLLFSYDGKDQVS 144
            ++D +FPQFRSFDWF GHSWARGLLFSYDGKDQ S
Sbjct:  532 KEDEYFPQFRSFDWFSGHSWARGLLFSYDGKDQES 566
[Close]
BLAST of mRNA_H-elongata_contig106502.533.1 vs. uniprot
Match: D8LL13_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL13_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 8.440e-13
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:   46 DAFFPQFRSFDWFCGHSWARGLLFSYDGKDQVS 144
            DAFFPQFRSFDWF GHSWARGLLF++DGKDQ S
Sbjct:  536 DAFFPQFRSFDWFSGHSWARGLLFAFDGKDQES 568
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BLAST of mRNA_H-elongata_contig106502.533.1 vs. uniprot
Match: A0A060TAI1_BLAAD (Endo-1,3(4)-beta-glucanase n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060TAI1_BLAAD)

HSP 1 Score: 62.0 bits (149), Expect = 5.970e-10
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 RATTSNILHTVS--LQDDAFFPQFRSFDWFCGHSWARGLLFSYDGKDQVS 144
            RA   N++  V+    DD +FP FRSFDWF GHSWA+GL  S DGKD+ S
Sbjct:  544 RAFVDNLVRDVANPSHDDPYFPVFRSFDWFSGHSWAKGLFLSGDGKDEES 593
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BLAST of mRNA_H-elongata_contig106502.533.1 vs. uniprot
Match: C0NSS9_AJECG (Endo-1,3(4)-beta-glucanase n=8 Tax=Histoplasma TaxID=5036 RepID=C0NSS9_AJECG)

HSP 1 Score: 61.6 bits (148), Expect = 8.160e-10
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   28 TVSLQDDAFFPQFRSFDWFCGHSWARGLLFSYDGKDQVS 144
            +  + DD FFP FRSFDW+ GHSWA+GL  SYDGKD+ S
Sbjct:  632 STPVPDDPFFPCFRSFDWYNGHSWAKGLFESYDGKDEES 670
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BLAST of mRNA_H-elongata_contig106502.533.1 vs. uniprot
Match: J7S259_KAZNA (Endo-1,3(4)-beta-glucanase n=1 Tax=Kazachstania naganishii (strain ATCC MYA-139 / BCRC 22969 / CBS 8797 / KCTC 17520 / NBRC 10181 / NCYC 3082 / Yp74L-3) TaxID=1071383 RepID=J7S259_KAZNA)

HSP 1 Score: 61.2 bits (147), Expect = 1.120e-9
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:   43 DDAFFPQFRSFDWFCGHSWARGLLFSYDGKDQVS 144
            DD FFPQFRSFDWF GHSWA+GL  S DGKD+ S
Sbjct:  559 DDPFFPQFRSFDWFNGHSWAKGLFESGDGKDEES 592
[Close]
BLAST of mRNA_H-elongata_contig106502.533.1 vs. uniprot
Match: G8ZXE3_TORDC (Endo-1,3(4)-beta-glucanase n=1 Tax=Torulaspora delbrueckii (strain ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 / NRRL Y-866) TaxID=1076872 RepID=G8ZXE3_TORDC)

HSP 1 Score: 61.2 bits (147), Expect = 1.120e-9
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   40 QDDAFFPQFRSFDWFCGHSWARGLLFSYDGKDQVS 144
            Q+D +FP FR+FDWFCGHSWA+GL  S DGKD+ S
Sbjct:  570 QNDIYFPAFRAFDWFCGHSWAKGLFESGDGKDEES 604
[Close]
BLAST of mRNA_H-elongata_contig106502.533.1 vs. uniprot
Match: A0A0F7TF93_PENBI (Endo-1,3(4)-beta-glucanase n=2 Tax=Penicillium brasilianum TaxID=104259 RepID=A0A0F7TF93_PENBI)

HSP 1 Score: 60.8 bits (146), Expect = 1.530e-9
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   34 SLQDDAFFPQFRSFDWFCGHSWARGLLFSYDGKDQVS 144
            S++DD +FP  RSFDWF GHSWA+GL  S+DGKDQ S
Sbjct:  646 SIEDDPYFPFSRSFDWFNGHSWAKGLFESFDGKDQES 682
[Close]
BLAST of mRNA_H-elongata_contig106502.533.1 vs. uniprot
Match: A0A1Q5UP67_9EURO (Endo-1,3(4)-beta-glucanase n=1 Tax=Penicillium subrubescens TaxID=1316194 RepID=A0A1Q5UP67_9EURO)

HSP 1 Score: 60.5 bits (145), Expect = 2.090e-9
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   34 SLQDDAFFPQFRSFDWFCGHSWARGLLFSYDGKDQVS 144
            S++DD +FP  RSFDWF GHSWA+GL  S+DGKDQ S
Sbjct:  647 SVEDDPYFPFSRSFDWFNGHSWAKGLFESFDGKDQES 683
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106502.533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGU3_ECTSI1.300e-1385.71Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
A0A6H5JFJ7_9PHAE3.310e-1366.67Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. ... [more]
D7FTA2_ECTSI4.520e-1382.86Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
D8LL13_ECTSI8.440e-1387.88Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
A0A060TAI1_BLAAD5.970e-1056.00Endo-1,3(4)-beta-glucanase n=1 Tax=Blastobotrys ad... [more]
C0NSS9_AJECG8.160e-1064.10Endo-1,3(4)-beta-glucanase n=8 Tax=Histoplasma Tax... [more]
J7S259_KAZNA1.120e-976.47Endo-1,3(4)-beta-glucanase n=1 Tax=Kazachstania na... [more]
G8ZXE3_TORDC1.120e-968.57Endo-1,3(4)-beta-glucanase n=1 Tax=Torulaspora del... [more]
A0A0F7TF93_PENBI1.530e-967.57Endo-1,3(4)-beta-glucanase n=2 Tax=Penicillium bra... [more]
A0A1Q5UP67_9EURO2.090e-967.57Endo-1,3(4)-beta-glucanase n=1 Tax=Penicillium sub... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106502contigH-elongata_contig106502:451..597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue6.6e-11
Seed eggNOG ortholog2880.D7FGU3
KEGG koko:K01180
EggNOG free text desc.chitin catabolic process
EggNOG OGsCOG5498@1,KOG2254@2759
EC3.2.1.6
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929595.7233276-CDS-H-elongata_contig106502:450..5971622929595.7233276-CDS-H-elongata_contig106502:450..597Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106502 451..597 -
1691679084.1233966-CDS-H-elongata_contig106502:450..5971691679084.1233966-CDS-H-elongata_contig106502:450..597Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106502 451..597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106502.533.1prot_H-elongata_contig106502.533.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106502 451..597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106502.533.1

>prot_H-elongata_contig106502.533.1 ID=prot_H-elongata_contig106502.533.1|Name=mRNA_H-elongata_contig106502.533.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
RATTSNILHTVSLQDDAFFPQFRSFDWFCGHSWARGLLFSYDGKDQVS*
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mRNA from alignment at H-elongata_contig106502:451..597-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106502.533.1 ID=mRNA_H-elongata_contig106502.533.1|Name=mRNA_H-elongata_contig106502.533.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig106502:451..597- (Himanthalia elongata Himel1 dioecious)
AGGGCAACGACGTCGAACATATTACACACCGTTTCGTTGCAGGACGACGC
TTTCTTCCCTCAGTTCCGGAGCTTTGACTGGTTCTGTGGCCACAGCTGGG
CGCGGGGGCTGCTCTTCTCCTACGACGGGAAAGACCAGGTCAGTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig106502:451..597-

>mRNA_H-elongata_contig106502.533.1 ID=mRNA_H-elongata_contig106502.533.1|Name=mRNA_H-elongata_contig106502.533.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig106502:451..597- (Himanthalia elongata Himel1 dioecious)
AGGGCAACGACGTCGAACATATTACACACCGTTTCGTTGCAGGACGACGC
TTTCTTCCCTCAGTTCCGGAGCTTTGACTGGTTCTGTGGCCACAGCTGGG
CGCGGGGGCTGCTCTTCTCCTACGACGGGAAAGACCAGGTCAGTTAGAGG
GCAACGACGTCGAACATATTACACACCGTTTCGTTGCAGGACGACGCTTT
CTTCCCTCAGTTCCGGAGCTTTGACTGGTTCTGTGGCCACAGCTGGGCGC
GGGGGCTGCTCTTCTCCTACGACGGGAAAGACCAGGTCAGTTAG
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